These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7881#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 746 fasta sequence [CCGAATCAGCGGCGGTGAGATTAAATTCATATCTCAATAAATTTCCCGCCGAGAAACATCGTGCGGTCCCGCAAAACACGCGCTGTGAGCTAGAAGGGGAAAAAAACGTTCTGCTGAAAATTGCACTCGTGGTGATAGTTCAGCGAAAAGCACAAACAACGTGCGGAGATGTGGAGTTCTGTGATACAAAGCGCAAAAAAACACGTGCCGTAAATGCAACCTCTTGCATCCGAAGAAACCTGCCCGGAACAACTTTCATCTTCTGCGCCCGGGTCCAAGTGACCACAGGCAGTCGGAGAAGACCGCGTACGCGAGCCTATGCTGCTGGGTGAATCGATTTTAATTCAATTAAGACAAAGCAAGCGCCGACCTGCTACAGTGAGCCCCCGAATCCATTCGTTCGCAGTGCTGCGTTCTTAATCGTTTGCTAGCAGTGGTAGTGTACAGTTCACAGCCGGCTGGTGTCGGAAGTTATTTGCCCGCTACAGAAGGAAACACAAATATATCAGCTTCCGGTGAGAAACAGACACACACACACGCGTATACACGCAAGGCTGACCGAGAACGCGGAACCAACAGCAGTAGCAGCAGCAGCAGAATCCTTCCCGGACGACGGTGTTATTGTGCTGAGGAGCCGCCGAAACATGAAGAAGCGCGGCGGCAGTCCACAGCCCGCTCCGCCGCCCCGGCCGGCCACGGCGGACGGTGGCATTGGCAGTGAATCGCTGCTGCACGCCTCGCAGCAC] [+] EMBL BM602330 [CCGAATCAGCGGCGGTGAGATTAAATTCATATCTCAATAAATTTCCAACCGAGAAACATCGTGCGGTCCCGCAAAACACGCGCTGTGAGCAAGAA GGAAAAAAACGTTCTGCTGAAAATTGCACTCGTGGTGATAGTTCAGCGAAAAGCACAAACAACGTGCGGAGATGTGGAGTGCTGTGAAACAAAGCGCAAAAAAACACGTGCCGTAAATGCAACCTCTTGCATCCGAAGCAACCTGCCCGGAACAACTTTCATCTTCTGCGCCCGGGTCCAAGTGACCACAGGCAGTCGGAGAAGACCGCGTACGCGAGCCTATGCTGCTGGGTGAATCGATTTTAATTCAATTAAGACAAAGCAAGCGCCGACCTGCTACAGTGAGCCCCCGAATCCATTCGTTCGCAGTGCTGCGTTCTTAATCGTTTGCTAGCAGTGGTAGTGTACAGTTCACAGCCGGCTGGTGTCGGAAGTTATTTGCCCGCTACCGAAGGAAAC ] [+] EMBL BM591561 [ CCGCCGAGAAACATCGTGCGGTCCCGCAAAACACGCGCTGTGAGCTAGAAGGGGAAAAAAACGTTCTGCTGAAAATTGCACTCGTGGTGATAGTTCAGCGAAAAGCACAAACAACGTGCGGAGATGTGGAGTTCTGTGATACAAAGCGCAAAAAAACACGTGCCGTAAATGCAACCTCTTGCATCCGAAGAAACCTGCCCGGAACAACTTTCATCTTCTGCGCCCGGGTCCAAGTGACCACAGGCAGTCGGAGAAGACCGCGTACGCGAGCCTATGCTGCTGGGTGAATCGATTTTAATTCAATTAAGACAAAGCAAGCGCCGACCTGCTACAGTGAGCCCCCGAATCCATTCGTTCGCAGTGCTGCGTTCTTAATCGTTTGCTAGCAGTGGTAGTGTACAGTTCACAGCCGGCTGGTGTCGGAAGTTATTTGCCCGCTACAGAAGGAAACACAAATATATCAGCTTCCGGTGAGAAACAGACACACACACACGCGTATACACGCAAGGCTGACCGAGAACGCGGAACCAACAGCAGTAGCAGCAGCAGCAGAATCCTTCCCGGACGACGGTGTTATTGTGCTGAGGAGCCGCCGAAACATGAAGAAGCGCGGCGGCAGTCCACAGCCCGCTCCGCCGCCCCGGCCGGCCACGGCGGACGGTGGCATTGGCAGTGAATCGCTGCTGCACGCCTCGCAGCAC] [+] EMBL BM653148 [ CCG CGAGAAACATCGTGCGGTCCCGCAAAACACGCGCTGTGAGCAAGAAGGAAAAAAAAACGTTCTGCTGAAAATTGCATTCGTGGTGATAGTTCAGCGAAAAGCACAAACAACGTGCGGAGATGTGGAGTTCTGTGATACAAAGCGCAAAAAAACACGTGCCGTAAATGCAACCTCTTGCATCCGAAGCAACCTGCCCGGAACAACTTTCATCTTGTGCGCCCGGGTCCAAGTGACCACACGCAGTCGGAGAAGACCGCGTACGCGATCCTATGCTGCTGGGTGAATCGATTTTAATTCAATTAAGACAAAGCAAGCGCCGACCTGCTACAGTGAGTCCCCGAATCCATTCGTTCGCAGTGCTGCGTTCTTAATCGTTTGCTAGCAGTGGTAGTGTACAGTTCACAGCCGGCTGGTGTCGGAAGTTATTTGCCCGCTACAGAAGGGAACACAAATATATCAGCTTCCGGTGAGAA ACACACACACGCGCGTATACACGCAAGGCTGGCCGAGAACGCGGAATCAACAGC AGCAGCAGCAGCAGAATCCTTCCCGGACGACGGTGTTATTGTGCTGAGGAGCCGCCGAAACATGAAGAAGCGCGGCGGCAGTCCACAGCCCGCTCCGCCGCCCCGACCGGTCACGGCGGACGGTGGCATTG ] [+] EMBL BM650456 [ ccgGAGAAACATCGTGCGGTCCCGCAAAACACGCGCTGTGAGCTAGAAGGGGAAAAAAACGTTCTGCTGAAAATTGCACTCGTGGTGATAGTTCAGCGAAAAGCACAAACAACGTGCGGAGATGTGGAGTTCTGTGATACAAAGCGCAAAAAAACACGTGCCGTAAATGCAACCTCTTGCATCCGAAGAAACCTGCCCGGAACAACTTTCATCTTCTGCGCCCGGGTCCAAGTGACCACAGGCAGTCGGAGAAGACCGCGTACGCGAGCCTATGCTGCTGGGTGAATCGATTTTAATTCAATTAAGACAAAGCAAGCGCCGACCTGCTACAGTGAGCCCCCGAATCCATTCGTTCGCAGTGCTGCGTTCTTAATCGTTTGCTAGCAGTGGTAGTGTACAGTTCACAGCCGGCTGGTGTCGGAAGTTATTTGCCCGCTACAGAAGGAAACACAAATATATCAGCTTCCGGTGAGAAACAGACACACACACACGCGTATACACGCAAGGCTGACCGAGAACGCGGAACCAACAGCAGTAGCAGCAGCAGCAGAATCCTTCCCGGACGACGGTGTTATTGTGCTGAGGAGCCGCCGAAACATGAAGAAGCGCGGCGGCAGTCCACAGCCCGCTCCGCCGCCCCGGCCGGCCACGGCGGACGGTGGCATTGGCAGTGAATCGCTGCTGCACGC ] [+] EMBL BM581721 [ ccgATCGTGCGGTCCCGCAAAACACGCGCTGTGAGCTAGAAGGGGAAAAAAACGTTCTGCTGAAAATTGCACTCGTGGTGATAGTTCAGCGAAAAGCACAAACAACGTGCGGAGATGTGGAGTTCTGTGATACAAAGCGCAAAAAAACACGTGCCGTAAATGCAACCTCTTGCATCCGAAGAAACCTGCCCGGAACAACTTTCATCTTCTGCGCCCGGGTCCAAGTGACCACAGGCAGTCGGAGAAGACCGCGTACGCGAGCCTATGCTGCTGGGTGAATCGATTTTAATTCAATTAAGACAAAGCAAGCGCCGACCTGCTACAGTGAGCCCCCGAATCCATTCGTTCGCAGTGCTGCGTTCTTAATCGTTTGCTAGCAGTGGTAGTGTACAGTTCACAGCCGGCTGGTGTCGGAAGTTATTTGCCCGCTACAGAAGGAAACACAAATATATCAGCTTCCGGTGAGAAACAGACACACACACACGCGTATACACGCAAGGCTGACCGAGAACGCGGAACCAACAGCAGTAGCAGCAGCAGCAGAATCCTTCCCGGACGACGGTGTTATTGTGCTGAGGAGCCGCCGAAACATGAAGAAGCGCGGCGGCAGTCCACAGCCCGCTCCGCCGCCCCGGCCGGCCACGGCGGACGGTGGCATTGGCAGTGAATCGCTGCTG ] consensusID : consensus_7881#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 678 fasta sequence [CCGCCGAGAAACATCGTGCGGTCCCGCAAAACACGCGCTGTGAGCAAGAAGGAAAAAAACGTTCTGCTGAAAATTGCATTCGTGGTGACAGTTCAGCGAAAAGCACAAACAACGTGCGGAGATGTGGAGTGCTGTGATACAAAGTGCAAAAAAACACGTGCCGTAAATGCAACCTTTTGCATCCGAAGAAACCTGCCCGGAACAACTTTCATCTTGTGCGCCCGGGTCCAAGTGACCACACGCAGTCGGAGAAGACCGCGTACGCGAGCCTATGCTGCTGGGTGAATCGATTTTAATTCAATTAAGACAAAGCAAGCGCCGACCTGCTACAGTGAGCCCCCGAATCCATTCGTTCGCAGTGCTGCGTTCTTAATCGTTTGCTAGCCGTGGTAGTGTACAGTTCACAGCACCACAGCGCGGTAGTGCCGGCTGTTGTCGGAAGTTATTTGCCCGCTACCGAAGGGAACACAAATATATCAGCTTCCGGTGAGAAACACACACACGCGCGTATACACGCAAGGCTGGCCGAGAACGCGGAATCAACAGCAGCAGCAGCAGCAGAATCCTTCCCGGACGACGGTGTTATTGTGCTGAGGAGCCGCCGAAACATGAAGAAGCGCGGCGGTAGTCCACAGCCCGCTCCGCCGCCCCGGCCGGCCACGGCGGACGGTGGCATTG] [+] EMBL BM575501 [CCGCCGAGAAACATCGTGCGGTCCCGCAAAACACGCGCTGTGAGCAAGAAGGAAAAAAACGTTCTGCTGAAAATTGCATTCGTGGTGACAGTTCAGCGAAAAGCACAAACAACGTGCGGAGATGTGGAGTGCTGTGATACAAAGTGCAAAAAAACACGTGCCGTAAATGCAACCTTTTGCATCCGAAGAAACCTGCCCGGAACAACTTTCATCTTGTGCGCCCGGGTCCAAGTGACCACACGCAGTCGGAGAAGACCGCGTACGCGAGCCTATGCTGCTGGGTGAATCGATTTTAATTCAATTAAGACAAAGCAAGCGCCGACCTGCTACAGTGAGCCCCCGAATCCATTCGTTCGCAGTGCTGCGTTCTTAATCGTTTGCTAGCCGTGGTAGTGTACAGTTCACAGCACCACAGCGCGGTAGTGCCGGCTGTTGTCGGAAGTTATTTGCCCGCTACCGAAGGGAACACAAATATATCAGCTTCCGGTGAGAAACACACACACGCGCGTATACACGCAAGGCTGGCCGAGAACGCGGAATCAACAGCAGCAGCAGCAGCAGAATCCTTCCCGGACGACGGTGTTATTGTGCTGAGGAGCCGCCGAAACATGAAGAAGCGCGGCGGTAGTCCACAGCCCGCTCCGCCGCCCCGGCCGGCCACGGCGGACGGTGGCATTG] [+] EMBL BM585212 [ ccgGTGCGGTCCCGCAAAACACGCGCTGTGAGCAAGAAGGAAAAAAACGTTCTGCTGAAAATTGCATTCGTGGTGACAGTTCAGCGAAAAGCACAAACAACGTGCGGAGATGTGGAGTGCTGTGATACAAAGTGCAAAAAAACACGTGCCGTAAATGCAACCTTTTGCATCCGAAGAAACCTGCCCGGAACAACTTTCATCTTGTGCGCCCGGGTCCAAGTGACCACACGCAGTCGGAGAAGACCGCGTACGCGAGCCTATGCTGCTGGGTGAATCGATTTTAATTCAATTAAGACAAAGCAAGCGCCGACCTGCTACAGTGAGCCCCCGAATCCATTCGTTCGCAGTGCTGCGTTCTTAATCGTTTGCTAGCCGTGGTAGTGTACAGTTCACAGCACCACAGCGCGGTAGTGCCGGCTGTTGTCGGAAGTTATTTGCCCGCTACCGAAGGCAACACAAATATATCAGCTTCCGGTGAGAAACACACACACGCGCGTATACACGCAAGGCTGGCCGAGAACGCGGAATCAACAGCAGCAGCAGCAGCAGAATCCTTCCCGGACGACGGTGTTATTGTGCTGAGGAGCCGCCGAAACATGAAGAAGCGCGGCGGTAGTCCACAGCCCGCTCCGCCGCCCCGGCCGGCCACGGCGGACGGTGGg ] [+] EMBL CNS09C9R [ ACACGCACGCGCGTATACACACAAGGCTGGCCGAGAACGCGGAATCAGCAGCATCAGCAGCAGCAGAATCCTTCCCGGACGACGGTGTTATTGTGCTGAGGAGCCGCCGAAA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7881#0 CCGAATCAGCGGCGGTGAGATTAAATTCATATCTCAATAAATTTCCCGCCGAGAAACATC 60 consensus_7881#1 ---------------------------------------------CCGCCGAGAAACATC 15 *************** consensus_7881#0 GTGCGGTCCCGCAAAACACGCGCTGTGAGCTAGAAGGGGAAAAAAACGTTCTGCTGAAAA 120 consensus_7881#1 GTGCGGTCCCGCAAAACACGCGCTGTGAGCAAGAAG--GAAAAAAACGTTCTGCTGAAAA 73 ****************************** ***** ********************** consensus_7881#0 TTGCACTCGTGGTGATAGTTCAGCGAAAAGCACAAACAACGTGCGGAGATGTGGAGTTCT 180 consensus_7881#1 TTGCATTCGTGGTGACAGTTCAGCGAAAAGCACAAACAACGTGCGGAGATGTGGAGTGCT 133 ***** ********* ***************************************** ** consensus_7881#0 GTGATACAAAGCGCAAAAAAACACGTGCCGTAAATGCAACCTCTTGCATCCGAAGAAACC 240 consensus_7881#1 GTGATACAAAGTGCAAAAAAACACGTGCCGTAAATGCAACCTTTTGCATCCGAAGAAACC 193 *********** ****************************** ***************** consensus_7881#0 TGCCCGGAACAACTTTCATCTTCTGCGCCCGGGTCCAAGTGACCACAGGCAGTCGGAGAA 300 consensus_7881#1 TGCCCGGAACAACTTTCATCTTGTGCGCCCGGGTCCAAGTGACCACACGCAGTCGGAGAA 253 ********************** ************************ ************ consensus_7881#0 GACCGCGTACGCGAGCCTATGCTGCTGGGTGAATCGATTTTAATTCAATTAAGACAAAGC 360 consensus_7881#1 GACCGCGTACGCGAGCCTATGCTGCTGGGTGAATCGATTTTAATTCAATTAAGACAAAGC 313 ************************************************************ consensus_7881#0 AAGCGCCGACCTGCTACAGTGAGCCCCCGAATCCATTCGTTCGCAGTGCTGCGTTCTTAA 420 consensus_7881#1 AAGCGCCGACCTGCTACAGTGAGCCCCCGAATCCATTCGTTCGCAGTGCTGCGTTCTTAA 373 ************************************************************ consensus_7881#0 TCGTTTGCTAGCAGTGGTAGTGTACAGTTCACAGC------------------CGGCTGG 462 consensus_7881#1 TCGTTTGCTAGCCGTGGTAGTGTACAGTTCACAGCACCACAGCGCGGTAGTGCCGGCTGT 433 ************ ********************** ****** consensus_7881#0 TGTCGGAAGTTATTTGCCCGCTACAGAAGGAAACACAAATATATCAGCTTCCGGTGAGAA 522 consensus_7881#1 TGTCGGAAGTTATTTGCCCGCTACCGAAGGGAACACAAATATATCAGCTTCCGGTGAGAA 493 ************************ ***** ***************************** consensus_7881#0 ACAGACACACACACACGCGTATACACGCAAGGCTGACCGAGAACGCGGAACCAACAGCAG 582 consensus_7881#1 ACA----CACACACGCGCGTATACACGCAAGGCTGGCCGAGAACGCGGAATCAACAGCAG 549 *** ******* ******************** ************** ********* consensus_7881#0 TAGCAGCAGCAGCAGAATCCTTCCCGGACGACGGTGTTATTGTGCTGAGGAGCCGCCGAA 642 consensus_7881#1 ---CAGCAGCAGCAGAATCCTTCCCGGACGACGGTGTTATTGTGCTGAGGAGCCGCCGAA 606 ********************************************************* consensus_7881#0 ACATGAAGAAGCGCGGCGGCAGTCCACAGCCCGCTCCGCCGCCCCGGCCGGCCACGGCGG 702 consensus_7881#1 ACATGAAGAAGCGCGGCGGTAGTCCACAGCCCGCTCCGCCGCCCCGGCCGGCCACGGCGG 666 ******************* **************************************** consensus_7881#0 ACGGTGGCATTGGCAGTGAATCGCTGCTGCACGCCTCGCAGCAC 746 consensus_7881#1 ACGGTGGCATTG-------------------------------- 678 ************ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||