cluster # 79

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Anopheles gambiae
cluster # 79 cluster # 79 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_79#0 length = 528 sequences # 1

consensus_79#1 length = 263 sequences # 1

consensusID : consensus_79#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 528
fasta sequence

                              [CCGCAGCGCTTCAAGCGGTTCATCGAATGTCAGGGCACCGATACGGACGATACCGATTCGGAGGCACACGTGCGCCGGCTTGAAAATGCTTACCACCGGTACGAGCGGCGTCTCTCGAACCATCTGTTCGATGAGTATCTGATGTTGAGTCGTAAGGCTAGCATTGCCACCACCACCGGAGGAGAGTCGAGTGCAACGGAGTTGGAGTTGGTCGAACTGGACGGAGGGCATGTACTGCGGGCATCCACAAGTAGACGCGCAACGGCCTGGGATTTGAAGGAAACGGAGTTGGAGGAACTGAATGAGGAGGAAGACCCGGCATTGAAAGAGGCTGGGGATTTCAAGCATGATGAGCTGGAGGATGAAGAATCGAAGCCGGAGGTGGAGACTTTGAAGAGCGCTGAAGTTCTCGGAATGCAGGAACCATTGGCAGACGTTCAAGGGGATCATTAGATGGCCTTGAGGTGGCATCGTAGTTGAAACAAAAACGACCCCAAAAAAGCACCAATTGTGTACGTAGAGAACGTG]

[+] EMBL BM629246             [CCGCAGCGCTTCAAGCGGTTCATCGAATGTCAGGGCACCGATACGGACGATACCGATTCGGAGGCACACGTGCGCCGGCTTGAAAATGCTTACCACCGGTACGAGCGGCGTCTCTCGAACCATCTGTTCGATGAGTATCTGATGTTGAGTCGTAAGGCTAGCATTGCCACCACCACCGGAGGAGAGTCGAGTGCAACGGAGTTGGAGTTGGTCGAACTGGACGGAGGGCATGTACTGCGGGCATCCACAAGTAGACGCGCAACGGCCTGGGATTTGAAGGAAACGGAGTTGGAGGAACTGAATGAGGAGGAAGACCCGGCATTGAAAGAGGCTGGGGATTTCAAGCATGATGAGCTGGAGGATGAAGAATCGAAGCCGGAGGTGGAGACTTTGAAGAGCGCTGAAGTTCTCGGAATGCAGGAACCATTGGCAGACGTTCAAGGGGATCATTAGATGGCCTTGAGGTGGCATCGTAGTTGAAACAAAAACGACCCCAAAAAAGCACCAATTGTGTACGTAGAGAACGTG]




>consensus_79#0
CCGCAGCGCTTCAAGCGGTTCATCGAATGTCAGGGCACCGATACGGACGATACCGATTCG
GAGGCACACGTGCGCCGGCTTGAAAATGCTTACCACCGGTACGAGCGGCGTCTCTCGAAC
CATCTGTTCGATGAGTATCTGATGTTGAGTCGTAAGGCTAGCATTGCCACCACCACCGGA
GGAGAGTCGAGTGCAACGGAGTTGGAGTTGGTCGAACTGGACGGAGGGCATGTACTGCGG
GCATCCACAAGTAGACGCGCAACGGCCTGGGATTTGAAGGAAACGGAGTTGGAGGAACTG
AATGAGGAGGAAGACCCGGCATTGAAAGAGGCTGGGGATTTCAAGCATGATGAGCTGGAG
GATGAAGAATCGAAGCCGGAGGTGGAGACTTTGAAGAGCGCTGAAGTTCTCGGAATGCAG
GAACCATTGGCAGACGTTCAAGGGGATCATTAGATGGCCTTGAGGTGGCATCGTAGTTGA
AACAAAAACGACCCCAAAAAAGCACCAATTGTGTACGTAGAGAACGTG

consensusID : consensus_79#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 263
fasta sequence

                              [CACCCGATCGTACAGCGCTCCAAGCGGTTCATCGAAGGCCAGGGCACCGATACGGACGAAACCGATGCGGAGGCACACGTGCGCCGGCCTGAAAAGGCTTACCACCGGTACGAGCGGCGGCTCCCGAACCATCTGTGCGATGAATATCTGATGGTGAGCCGGAAGGCGAGCATTGCCACCACCACCGGGGGAGAGTCGAGGGCAACGGAGTCGGAGTGGGTGGAACCGGACGGAGGGCAGGGGCTGAGAGCACCCACAAGGAG]

[+] EMBL BX616315             [CACCCGATCGTACAGCGCTCCAAGCGGTTCATCGAAGGCCAGGGCACCGATACGGACGAAACCGATGCGGAGGCACACGTGCGCCGGCCTGAAAAGGCTTACCACCGGTACGAGCGGCGGCTCCCGAACCATCTGTGCGATGAATATCTGATGGTGAGCCGGAAGGCGAGCATTGCCACCACCACCGGGGGAGAGTCGAGGGCAACGGAGTCGGAGTGGGTGGAACCGGACGGAGGGCAGGGGCTGAGAGCACCCACAAGGAG]




>consensus_79#1
CACCCGATCGTACAGCGCTCCAAGCGGTTCATCGAAGGCCAGGGCACCGATACGGACGAA
ACCGATGCGGAGGCACACGTGCGCCGGCCTGAAAAGGCTTACCACCGGTACGAGCGGCGG
CTCCCGAACCATCTGTGCGATGAATATCTGATGGTGAGCCGGAAGGCGAGCATTGCCACC
ACCACCGGGGGAGAGTCGAGGGCAACGGAGTCGGAGTGGGTGGAACCGGACGGAGGGCAG
GGGCTGAGAGCACCCACAAGGAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_79#0      ---------CCGCAGCGCTTCAAGCGGTTCATCGAATGTCAGGGCACCGATACGGACGAT 51
consensus_79#1      CACCCGATCGTACAGCGCTCCAAGCGGTTCATCGAAGGCCAGGGCACCGATACGGACGAA 60
                                ******* **************** * ******************** 

consensus_79#0      ACCGATTCGGAGGCACACGTGCGCCGGCTTGAAAATGCTTACCACCGGTACGAGCGGCGT 111
consensus_79#1      ACCGATGCGGAGGCACACGTGCGCCGGCCTGAAAAGGCTTACCACCGGTACGAGCGGCGG 120
                    ****** ********************* ****** *********************** 

consensus_79#0      CTCTCGAACCATCTGTTCGATGAGTATCTGATGTTGAGTCGTAAGGCTAGCATTGCCACC 171
consensus_79#1      CTCCCGAACCATCTGTGCGATGAATATCTGATGGTGAGCCGGAAGGCGAGCATTGCCACC 180
                    *** ************ ****** ********* **** ** ***** ************

consensus_79#0      ACCACCGGAGGAGAGTCGAGTGCAACGGAGTTGGAGTTGGTCGAACTGGACGGAGGGCAT 231
consensus_79#1      ACCACCGGGGGAGAGTCGAGGGCAACGGAGTCGGAGTGGGTGGAACCGGACGGAGGGCAG 240
                    ******** *********** ********** ***** *** **** ************ 

consensus_79#0      GTACTGCGGGCATCCACAAGTAGACGCGCAACGGCCTGGGATTTGAAGGAAACGGAGTTG 291
consensus_79#1      GGGCTGAGAGCACCCACAAGGAG------------------------------------- 263
                    *  *** * *** ******* **                                     

consensus_79#0      GAGGAACTGAATGAGGAGGAAGACCCGGCATTGAAAGAGGCTGGGGATTTCAAGCATGAT 351
consensus_79#1      ------------------------------------------------------------
                                                                                

consensus_79#0      GAGCTGGAGGATGAAGAATCGAAGCCGGAGGTGGAGACTTTGAAGAGCGCTGAAGTTCTC 411
consensus_79#1      ------------------------------------------------------------
                                                                                

consensus_79#0      GGAATGCAGGAACCATTGGCAGACGTTCAAGGGGATCATTAGATGGCCTTGAGGTGGCAT 471
consensus_79#1      ------------------------------------------------------------
                                                                                

consensus_79#0      CGTAGTTGAAACAAAAACGACCCCAAAAAAGCACCAATTGTGTACGTAGAGAACGTG 528
consensus_79#1      ---------------------------------------------------------