These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7906#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1066 fasta sequence [AGCTCGTTGTTTA-AAACGAGTCTATTCCGTGCTGCATCAACATTCTGCCCAAAAAACCATCATAAAATAGGTTTAACCATGAATTCTGCCACTAAGGTAGGGGAGATTTTTACCGCTGCCGGTGCTGCATTCAACAGCCTGGGAGAGCTAACGATGCAACTGCACCCTTCGTCCGATTCTCCAACCGGGAGCAAATGGACAGATGAAGAAATAGAGATGCTTCGGTCCGCAGTCACACGGTTCAGTGAGGATTTGAGCAAAATCAGTCAGCGCATCAAAGGCCGTACGGTATCGCAAATCCGGCACACGCTCAAGAAGAAAGCGTTCGAAGATGCTGGCCTACCGGTCAGGCAGCTAACGCAACCCACTTCCACACAGTCACATCACCTGCAGCAACAAGCGCAG----AGCAGCAGCAGCAAATCATTGTTACGTCCTCTGCACACTACGAGGAGGGAGTTCCTTCCTCTACCGTAATTGCACATCCGATGGTGATCGAATCAGTCATAAAGGACGATAATACCGAGTCGAGCGGGTTGCTTTGCCAACCGGCCGACATTTCGATGACGCTGAACCGGCTAAACACGCAGGAACACGAGGCAGACGTGGAGGGAATGGCTTCCAGCGAAAT-GAAGCTCGAGTTCGAACCGGGCACGGAAGAAGTGGCCGGGTGAAACGAGGATGATTTTTACTACAGCGAACCGAAGGATTAGTACTGGATGTTAACCGGCAATAC-TATTTCGCGCGCGCGCG-GGTAATGTTCTCTGAAAGTAGTGTAACGATGCAATGGGTATATGGGTAGCCTAAATTGAAACCAATCTTCCCTCCCTTCATGCAGTAGATTCCTCGGTGGCCAACTCTATGACTTTAAAACGATCTCCCGAACGAACAAGTCATACATATTGGTTGTGTAAATGGTTGGGAAAGAAGTTCATGTGTGTTTGTGTGTTTCAGTTTTAATATGTGCGGTGTTAATTCGCAAGGGCCCAAGATGTGGTGGTCGCATTGTCTTTTGTATAAATAAATGTGTGCATCGAGTAACTGATGCCTCTCGTCTC--GTAAAAAAAAA] [+] EMBL CNS08TLX [AGCTCGTTGTTTA AAACGAGTCTATTCCGTGCTGCATCAACATTCTGCCCAAAAAACCATCATAAAATAGGTTTAACCATGAATTCTGCCACTAAGGTAGGGGAGATTTTTACCGCTGCCGGTGCTGCATTCAACAGCCTGGGAGAGCTAACGATGCAACTGCACCCTTCGTCCGATTCTCCAACCGGGAGCAAATGGACAGATGAAGAAATAGAGATGCTTCGGTCCGCAGTCACACGGTTCAGTGAGGATTTGAGCAAAATCAGTCAGCGCATCAAAGGCCGTACGGTATCGCAAATCCGGCACACGCTCAAGAAGAAAGCGTTCGAAGATGCTGGCCTACCGGTCAGGCAGCTAACGCAACCCACTTCCACACAGTCACATCACCTGCAGCAACAAGCGCAC AGCAGCAGCAGCAAATCATTGTTACGTCCTCTGCACACTACGAGGAGGGAGTTCCTTCCTCTACCGTAATTGCACATCCGATGGTGATCGAATCAGTCATAAAGGACGATAATACCGAGTCGAGCGGGTTGCTTTGCCAACCGGCCGACATTTCGATGACGCTGAACCGGCTAAACACGCAGGAACACGAGGCAGACGTGGAGGGAATGGCTTCCAGCGAAAT GAAGCTCGAGTTCGAACCGGGCACGGAAGAAGTGGCCGGGTGAAACGAGGATGATTTTTACTACAGCGAACCGAAGATTTAGTACTGGATGTTAACCGGCAATAC TATTTCGCGCGCGCGCG GGTAGTGTTCTCTGAAAGTA ] [+] EMBL CNS09MWI [ CGTTGTTTACAAACGAGTCTATTCCGTGCTGCATCAACATTCTGCCCAAAAAACCATCATAAAATAGGTTTAACCATGAATTCTGCCACTAAGGTAGGGGAGATTTTTACCGCTGCCGGTGCTGCATTCAACAGCCTGGGAGAGCTAACGATGCAACTGCACCCTTCGTCCGATTCTCCAACCGGGAGCAAATGGACAGATGAAGAAATAGAGATGCTTCGGTCCGCAGTCACACGGTTCAGTGAGGATTTGAGCAAAATCAGTCAGCGCATCAAAGGCCGTACGGTATCGCAAATCCGGCACACGCTCAAGAAGAAAGCGTTCGAAGATGCTGGCCTACCGGTCAGGCAGCTAACGCAACCCACTTCCACACAGTCACATCACCTGCAGCAACAAGCGCAG AGCAGCAGCAGCAAATCATTGTTACGTCCTCTGCACACTACGAGGAGGGAGTTCCTTCCTCTACCGTAATTGCACATCCGATGGTGATCGAATCAGTCATAAAGGACGATAATACCGAGTCGAGCGGGTTGCTTTGCCAACCGGCCGACATTTCGATGACGCTGAACCGGCTAAACACGCAGGAACACGAGGCAGACGTGGAGGGAATGGCTTCCAGCGAAAT GAAGCTCGAGTTCGAACCGGGCACGGAAGAAGTGGCCGGGTGAAACGAGGATGATTTTTACTACAGCGAACCGAAGATTTAGTACTGGATGTTAACCGGCAATAC TATTTCGCGCGCGCGCG GGTAATGTTCTCTGAAAGTAGTGT ACGATGCAATGGGTATATGGGTAGCCTAAATTGAAACCAATCTTCCCTCCCTTCATGCAGTAGATTCCTCGGTGGCCAACTCTATGACTTTAAAACGATCTCCCGAACGAACAAGTCATACATATTGGTTGTGTAAATGGTTGGGAAAGAAGTTCATGTGTGTTTTTGTGTTTCAGTTTTAATA ] [+] EMBL BM618082 [ ccgCAACATTCTGCCC AAAAACCATCATAAAATAGGTTTAAGAATGAATTCTGCCACTAAGGTAGGGGAGATTTTTACCGCTGCCGGTGCTGCATTCAACAGCCTGGGAGAGCTAACGATGCAACTGCACCCTTCGTCCGATTCTCCAACCGGGAGCAAATGGACAGATGAAGAAATAGAGATGCTTCGGTCCGCAGTCACACGGTTCAGTGAGGATTTGAGCAAAATCAGTCAGCGCATCAAAGGCCGTACGGTATCGCAAATCCGGCACACGCTCAAGAAGAAAGCGTTCGAAGATGCTGGCCTACCGGTCAGGCAGCTAACGCAACCCACTTCCACACAGTCACATCACCTGCAGCAACAAGCGC AGCAGCAGCAGCAAATCATTGTTACGTCCTCTGCACACTACGAGGAGGGAGTTCCTTCCTCTACCGTAATTGCACATCCGATGGTGATCGAATCGGTCATAAAGGACGATAATACCGAGTCGAGCGGGTTGCTTTGCCAACCGGCCGACATTTCGATGACGCTGAACAGGCTAAACACGCAGGAACACGAGGCAGACGTGGAGGGAATGGCTTCCAGCGAAATGGAAGCTCGAGTTCGAACCGGGCACGGAAGAAGTGGCCGGGTGAAACGAGGATGATTTTTACTACAGCGAACCGAAGGATTAGTACTGGATGTTAACCGGCAATAC TATTTCCCGCGCGCGCG ] [+] EMBL BM592029 [ ccgCATAAAATAGGTTTAACCATGAATTCTGCCACTAAGGTAGGGGAGATTTTTACCGCTGCCGGTGCTGCATTCAACAGCCTGGGAGAGCTAACGATGCAACTGCACCCTTCGTCCGATTCTCCAACCGGGAGCAAATGGACAGATGAAGAAATAGAGATGCTTCGGTCCGCAGTCACACGGTTCAGTGAGGATTTGAGCAAAATCAGTCAGCGCATCAAAGGCCGTACGGTATCGCAAATCCGGCACACGCTCAAGAAGAAAGCGTTCGAAGATGCTGGCCTACCGGTCAGGCAGCTAACGCAACCCACTTCCACACAGTCACATCACCTGCAGCAACAAGCGCAGCAGCAGCAGCAGCAGCAAATCATTGTTACGTCCTCTGCACACTACGAGGAGGGAGTTCCTTCCTCTACCGTAATTGCACATCCGATGGTGATCGAATCGGTCATAAAGGACGATAATACCGAGTCGAGCGGGTTGCTTTGCCAACCGGCCGACATTTCGATGACGCTGAACCGGCTAAACACGCAGGAACACGAGGCAGACGTGGAGGGAATGGCTTCCAGCGAAAT GAAGCTCGAGTTCGAACCGGGCACGGAAGAAGTGGCCGGGTGAAACGAGGATGATTTTTACTACAGCGAACCGAAGGATTAGTACTGGATGTTAACCGGCAATAC TATTTCGCG ] [+] EMBL BX625395 [ GCTAACGATGCAACTGCACCCTTCGTCCGATTCTCCAACCGGGAGCAAATGGACAGATGAAGAAATAGAGATGCTTCGGTCCGCAGTCACACGGTTCAGTGAGGATTTGAGCAAAATCAGTCAGCGCATCAAAGGCCGTACGGTATCGCAAATCCGGCACACGCTCAAGAAGAAAGCGTTCGAAGATGCTGGCCTACCGGTCAGGCAGCTAACGCAACCCACTTCCACACAGTCACATCACCTGCAGCAACAAGCGCAGC AGCAGCAGCAGCAAATCATTGTTACGTCCTCTGCACACTACGAGGAGGGAGTTCCTTCCTCTACCGTAATTGCACATCCGATGGTGATCGAATCGGTCATAAAGGACGATAATACCGAGTCGAGCGGGTTGCTTTGCCAACCGGCCGACATTTCGATGACGCTGAACCGGCTAAACACGCAGGAACACGAGGCAGACGTGGAGGGAATGGCTTCCAGCGAAAT GAAGCTCGAGTTCGAACCGGGCACGGAAGAAGTGGCCGGGTGAAACGAGGATGATTTTTACTACAGCGAACCGAAGGATTAGTACTGGATGTTAACCGGCAATAC TATTTCGCGCGCGCGCGCGGT ATGTTCTCTGAAAGTAGTGTAACGATGCAATGGGTATATGGGTAGCCTAAATTGAAACCAATCTTCCCTCCCTTCATGCAGTAGATTCCTCGGNGGNCAACTCTATGACTTTAAAACGATCTCCCGAACGAACAAGTCg ] [-] EMBL CNS08TLY [ ACAGATGAAGAAATAGAGATGCTTCGGTCCGAAGTAACACGGTTCAGTGAGGATTTGAGCAAAATCAGTCAGCGCATCAAAGGCCGTACGGTTTCGCAAATCCGGGACACGCTCAAGAAGAAAGCGTTCGAAGATGCTGGCCTACCGGTCAGGCAG TAACGCAACCCACTTCCAAAAAGTCACATCACCTGCAGCAAAAAGCGCAGC AGCAGCAGCAGCAAATCATTGTTACGTCCTCTGCACACTACGAGGAGGGAGTTCCTTCCTCTACCGTAATTGCACATCCGATGGTGATCGAATTAGTCATAAAGGACGATAATACCGAGTCGAGCGGGTTGCTTTGCCAACCGGCCGACATTTCGATGACGCTGAACCGGCTAAACACGCAGGAACACGAGGCAGACGTGGAGGGAATGGCTTCCAGCGAAAT GAAGCTCGAGTTCGAACCGGGCACGGAAGAAGTGGCCGGGTGAAACGAGGATGATTTTTACTACAGCGAACCGAAGGATTAGTACTGGATGTTAACCGGCAATACTTTTTTCGCGCGCGCGCGCGGT ATGTTCTCTGAAAGTAGTGTAACGATGCAATGGGTATATGGGTAGCCTAAATTGAAACCAATCTTCCCTCCCTTCATGCAGTAGATTCCTCGGTGGCCAACTCTATGACTTTAAAACGATCTCCCGAACGAACAAGTCATACATATTGGTTGTGTAAATGGTTGGGAAAGAAGTTCATGTGTGTTTGTGTGTTTCAGTTTTAATATGTGCGGTGTTAATTCGCAAGGGCCCAAGATGTGGTGGTCGCATTGTCTTTTGTATAAATAAATGTGTGCATCGAGTAACTGATGCCTCTCGTCTCGGGTAAA ] [-] EMBL CNS09MWJ [ ACTCTATGACTTTAAAACGATCTCCCGAACGAACAAGTCATACATATTGGTTGTGTAAATGGTTGGGAAAGAAGTTCATGTGTGTTTGTGTGTTTCAGTTTTAATATGTGCGGTGTTCATTCGCAAGGGCCCAAGATGTGGTGGTCGCATTGTCTTTTGTATAAATAAATGTGTGCATCGAGTCACTGATGCCTCTCGTCTC GTAAAAAAAAA] consensusID : consensus_7906#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 754 fasta sequence [AAAACCATCATAAAATAGGTTTAACCATGAATTCTGCCACTAAGTTAGGGGAGATTTTTACCGCTGCCGGTGCTGCATTCAACAGCCTGGGAGAGCTAACGATGCAACTGCACCCTTCGTCCGATTCTCCAACCGGATCGCAAATCCGGCACACGCTCAAGAATAAAGCGTTCGAAGATGCTGGCCTACCGGTCAGGCAGCTAACGCAACCCACTTCCACACAGTCACATCACCTGCAGCAACAAGCGCAGCAGCAGCAGCAGCAAATCATTGTTACGTCCTCTGCACACTACGAGGAGGGAGTTCCTTCCTCTACCGTAATTGCACATCCGATGGTGATCGAATCGGTCATAAAGGACGATAATACCGAGTCGAGCGGGTTGCTTTGCCAACCGGCCGACATTTCGATGACGCTGAACCGGCTAAACACGCAGGAACACGAGGCAGACGTGGAGGGAATGGCTTCCAGCGAAATGAAGCTCGAGTTCGAACCGGGCACGGAAGAAGTGGCCGGGTGAAACGAGGATGATTTTTACTACAGCGAACCGAAGGATTAGTACTGGATGTTAACCGGCAATACTATTTCGCGCGCGCGCGCGGTATGTTCTCTGAAAGTAGTGTAACGATGCAATGGGTATATGGGTAGCCTAAATTGAAACCAATCTTCCCTCCCTTCATGCAGTAGATTCCTCGGTGGCCAACTCTATGACTTTAAAACGATCTCCCGAACGAACAAGTCGTACATATTGGTTGT] [+] EMBL BX616278 [AAAACCATCATAAAATAGGTTTAACCATGAATTCTGCCACTAAGTTAGGGGAGATTTTTACCGCTGCCGGTGCTGCATTCAACAGCCTGGGAGAGCTAACGATGCAACTGCACCCTTCGTCCGATTCTCCAACCGGATCGCAAATCCGGCACACGCTCAAGAATAAAGCGTTCGAAGATGCTGGCCTACCGGTCAGGCAGCTAACGCAACCCACTTCCACACAGTCACATCACCTGCAGCAACAAGCGCAGCAGCAGCAGCAGCAAATCATTGTTACGTCCTCTGCACACTACGAGGAGGGAGTTCCTTCCTCTACCGTAATTGCACATCCGATGGTGATCGAATCGGTCATAAAGGACGATAATACCGAGTCGAGCGGGTTGCTTTGCCAACCGGCCGACATTTCGATGACGCTGAACCGGCTAAACACGCAGGAACACGAGGCAGACGTGGAGGGAATGGCTTCCAGCGAAATGAAGCTCGAGTTCGAACCGGGCACGGAAGAAGTGGCCGGGTGAAACGAGGATGATTTTTACTACAGCGAACCGAAGGATTAGTACTGGATGTTAACCGGCAATACTATTTCGCGCGCGCGCGCGGTATGTTCTCTGAAAGTAGTGTAACGATGCAATGGGTATATGGGTAGCCTAAATTGAAACCAATCTTCCCTCCCTTCATGCAGTAGATTCCTCGGTGGCCAACTCTATGACTTTAAAACGATCTCCCGAACGAACAAGTCGTACATATTGGTTGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7906#0 AGCTCGTTGTTTAAAACGAGTCTATTCCGTGCTGCATCAACATTCTGCCCAAAAAACCAT 60 consensus_7906#1 ----------------------------------------------------AAAACCAT 8 ******** consensus_7906#0 CATAAAATAGGTTTAACCATGAATTCTGCCACTAAGGTAGGGGAGATTTTTACCGCTGCC 120 consensus_7906#1 CATAAAATAGGTTTAACCATGAATTCTGCCACTAAGTTAGGGGAGATTTTTACCGCTGCC 68 ************************************ *********************** consensus_7906#0 GGTGCTGCATTCAACAGCCTGGGAGAGCTAACGATGCAACTGCACCCTTCGTCCGATTCT 180 consensus_7906#1 GGTGCTGCATTCAACAGCCTGGGAGAGCTAACGATGCAACTGCACCCTTCGTCCGATTCT 128 ************************************************************ consensus_7906#0 CCAACCGGGAGCAAATGGACAGATGAAGAAATAGAGATGCTTCGGTCCGCAGTCACACGG 240 consensus_7906#1 CCAACCGG---------------------------------------------------- 136 ******** consensus_7906#0 TTCAGTGAGGATTTGAGCAAAATCAGTCAGCGCATCAAAGGCCGTACGGTATCGCAAATC 300 consensus_7906#1 --------------------------------------------------ATCGCAAATC 146 ********** consensus_7906#0 CGGCACACGCTCAAGAAGAAAGCGTTCGAAGATGCTGGCCTACCGGTCAGGCAGCTAACG 360 consensus_7906#1 CGGCACACGCTCAAGAATAAAGCGTTCGAAGATGCTGGCCTACCGGTCAGGCAGCTAACG 206 ***************** ****************************************** consensus_7906#0 CAACCCACTTCCACACAGTCACATCACCTGCAGCAACAAGCGCAG-AGCAGCAGCAGCAA 419 consensus_7906#1 CAACCCACTTCCACACAGTCACATCACCTGCAGCAACAAGCGCAGCAGCAGCAGCAGCAA 266 ********************************************* ************** consensus_7906#0 ATCATTGTTACGTCCTCTGCACACTACGAGGAGGGAGTTCCTTCCTCTACCGTAATTGCA 479 consensus_7906#1 ATCATTGTTACGTCCTCTGCACACTACGAGGAGGGAGTTCCTTCCTCTACCGTAATTGCA 326 ************************************************************ consensus_7906#0 CATCCGATGGTGATCGAATCAGTCATAAAGGACGATAATACCGAGTCGAGCGGGTTGCTT 539 consensus_7906#1 CATCCGATGGTGATCGAATCGGTCATAAAGGACGATAATACCGAGTCGAGCGGGTTGCTT 386 ******************** *************************************** consensus_7906#0 TGCCAACCGGCCGACATTTCGATGACGCTGAACCGGCTAAACACGCAGGAACACGAGGCA 599 consensus_7906#1 TGCCAACCGGCCGACATTTCGATGACGCTGAACCGGCTAAACACGCAGGAACACGAGGCA 446 ************************************************************ consensus_7906#0 GACGTGGAGGGAATGGCTTCCAGCGAAATGAAGCTCGAGTTCGAACCGGGCACGGAAGAA 659 consensus_7906#1 GACGTGGAGGGAATGGCTTCCAGCGAAATGAAGCTCGAGTTCGAACCGGGCACGGAAGAA 506 ************************************************************ consensus_7906#0 GTGGCCGGGTGAAACGAGGATGATTTTTACTACAGCGAACCGAAGGATTAGTACTGGATG 719 consensus_7906#1 GTGGCCGGGTGAAACGAGGATGATTTTTACTACAGCGAACCGAAGGATTAGTACTGGATG 566 ************************************************************ consensus_7906#0 TTAACCGGCAATACTATTTCGCGCGCGCGCGGGTAATGTTCTCTGAAAGTAGTGTAACGA 779 consensus_7906#1 TTAACCGGCAATACTATTTCGCGCGCGCGCGCGGTATGTTCTCTGAAAGTAGTGTAACGA 626 ******************************* * ************************* consensus_7906#0 TGCAATGGGTATATGGGTAGCCTAAATTGAAACCAATCTTCCCTCCCTTCATGCAGTAGA 839 consensus_7906#1 TGCAATGGGTATATGGGTAGCCTAAATTGAAACCAATCTTCCCTCCCTTCATGCAGTAGA 686 ************************************************************ consensus_7906#0 TTCCTCGGTGGCCAACTCTATGACTTTAAAACGATCTCCCGAACGAACAAGTCATACATA 899 consensus_7906#1 TTCCTCGGTGGCCAACTCTATGACTTTAAAACGATCTCCCGAACGAACAAGTCGTACATA 746 ***************************************************** ****** consensus_7906#0 TTGGTTGTGTAAATGGTTGGGAAAGAAGTTCATGTGTGTTTGTGTGTTTCAGTTTTAATA 959 consensus_7906#1 TTGGTTGT---------------------------------------------------- 754 ******** consensus_7906#0 TGTGCGGTGTTAATTCGCAAGGGCCCAAGATGTGGTGGTCGCATTGTCTTTTGTATAAAT 1019 consensus_7906#1 ------------------------------------------------------------ consensus_7906#0 AAATGTGTGCATCGAGTAACTGATGCCTCTCGTCTCGTAAAAAAAAA 1066 consensus_7906#1 ----------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||