|
These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7923#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 994 fasta sequence
[TAAAAACATGCCGGAACGCTTTTTTGCCCAAAAGGTAGTGTATCGATTTTGTAACAGGAATCCGTTATTTCCTTGCTTACTCTAACTCTAAGGCGCCCTAACAATCGGTGCAGCGGCGAGAACGAGCGGCGTAAACATAAACACCATCCTGAACCCTTTCCCAGAGGCCGGCCGCGTGCACGTGTGTAATTTTGTAGCTGCCTGCGCCACAGAAGAGCAACGAAACGAACGAGAACCAATACTGCCAAATAAAAGCGATACCTGTTTCGCAAGTACTACAGGATGATATGTAGGGCCACATTAGCAACGAAACAAGCTCTGTAACGACAAGAAACAAAGGCCCCCAGAATGGAAGAAAGTTTATCTAATGCTGTTAGGGATGAACCCGCCATCCGGCAGGAAGCGACAACGATGGAGACAGACTGTCCAAAAGATGAGCAGTGCCCGATAGTACCCGAGCCGGACAAGCTCCCGACCGTGCCGGAAGTGGTGCAAAGTCAATCCACACCCGAAGCCCCACCGGAAGCCGACCGAAGCGACGAACCGGACAAACCGAACGGCACCCTCTCCAAGCGGCAGCGCAAAAAGCTGCTCAAGCTAGAGAATTGGGAGCAGCGGAAAAAGGAAAAGCGCCAGAAGGAGAAAGAAAAGATGAAGGCGAA-CGACAGGAAGCAATCCAGCAGGGGCTGCCGGTGCGCACCGGTCCGAGCCGGAAGGAGCTGAAGCGGCGAAAGGTGAGCTACGGCGAGGCGACGATCGAGGTCGCTGTCGACCTGAGCTTCGACCAGCTGATGATCGACAAGGTTGTGGCAATGCGGAGGACTGCCAGGCAACCGCCGAGCAGAGCGCTTGAACAGTTTTGTCGGTTGAATTGTACAGAATCAGTTTTTTATTTCTTCGTTTTTTTATAGTCTTAATAGTGGCAGGATTATAAACAAACGTGTCCTTCTCTGACGTTGCAGTGAAAAAAAAAAAAAAATTTAAAAAAAAAAAG]
[+] EMBL CNS0940B [TAAAAACATGCCGGAACGCTTTTTTGCCCAAAAGGTAGTGTATCGATTTTGTAACAGGAATCCGTTATTTCCTTGCTTACTCTAACTCTAAGGCGCCCTAACAATCGGTGCAGCGGCGAGAACGAGCGGCGTAAACATAAACACCATCCTGAACCCTTTCCCAGAGGCCGGCCGCGTGCACGTGTGTAATTTTGTAGCTGCCTGCGCCACAGAAGAGCAACGAAACGAACGAGAACCAATACTGCCAAATAAAAGCGATACCTGTTTCGCAAGTACTACAGGATGATATGTAGGGCCACATTAGCAACGAAACAAGCTCTGTAACGACAAGAAACAAAGGCCCCCAGAATGGAAGAAAGTTTATCTAATGCTGTTAGGGATGAACCCGCCATCCGGCAGGAAGCGACAACGATGGAGACAGACTGTCCAAAAGATGAGCAGTGCCCGATAGTACCCGAGCCGGACAAGCTCCCGACCGTGCCGGAAGTGGTGCAAAGTCAATCCACACCCGAAGCCCCACCGGAAGCCGACCGAAGCGACGAACCGGACAAACCGAACGGCACCCTCTCCAAGCGGCAGCGCAAAAAGCTGCTCAAGCTAGAGAATTGGGAGCAGCGGAAAAAGGAAAAGCGCCAGAAGGAGAAAGAAAAGATGAAGGCGAA CGACAGGAAGCAATCCAGCAGGGGCTGCCGGTGCGCACCGGTCCGAGCCGGAAGGAGCTGAAGCGGCGAAAGGTGAGCTACGGCGAGGCGACGATCGAGGTCGCTGTCGACCTGAGCTTCGACCAGCTGATGATCGACAAGGTTGTGGCAATGCGGAGGACTGCCAGGCAACCGCCGAGCAGAGCGCTTGAACAGTTTTGTCGGTTGAATTGTACAGAATCAGTTTTTTATTTCTTCGTTTTTTTATAGTCTTAATAGTGGCAGGATTATAAACAAACGTGTCCTTCTCTGACGTTGCAGTGAAAAAAAAAAAAAAATTTAAAAAAAAAAAG]
[-] EMBL CNS0940C [ AGACTGTCCAAAAGATGAGCAGTGCCCGATAGTACCCGAGCCGGAAAAGCTCCCGACCGTGCCGGAAGTGGTGCAAAGTCAATCCACACCCGAAGCCCCACCGGAAGCCGACCGAAGCGACGAACCGGACAAACCGAACGGCACCCTCTCCAAGCGGCAGCGCAAAAAGCTGCTCAAGCTAGAGAATTGGGAGCAGCGGAAAAAGGAAAAGCGCCAGAAGGAGAAAGAAAAGATGAAGGCGAAGCGACAGGAAGCAATCCAGCAGGGGCTGCCGGTGCGCACCGGTCCGAGCCGGAAGGAGCTGAAGCGGCGAAAGGTGAGCTACGGCGAGGCGACGATCGAGGTCGCTGTCGACCTGAGCTTCGACCAGCTGATGATCGACAAGGATGTGGCAATGCGGAGGACTGCCAGGCAACCGCCGAGAAGAGCGGTTGAACAGTTTTGTCGGTTGAATTGTAAAGAAAAAGTTT ]
consensusID : consensus_7923#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 931 fasta sequence
[GCCGCCCACG-CGTCCG--CGCTTTTTTGCCCAAAAGGTAGTGTATCGATTTTGTAACAGGAATCCGTTATTTCCTTGCTTGCTCTAACTCTAAGGCGCCCTAACAATCGGTGCAGCGGCGAGAACGAGCGGCGTAAACATAAACACCATCCTGAACCCTTTCCCAGAGGCCGGCCGCGTGCACGTGTGTAATTTTGTAGCTGCCTGCGCCACAGAAGAGCAACGAAACGAACGAGAACCAATACTGCCAAATAAAAGCGATACCTGTTTCGCAAGTACTACAGGATGATATGTAGGGCCACATTAGCAACGAAACAAGCTCTGTAACGACAAGAAACAAAGGCCCCCAGAATGGAAGAAAGTTTATCTAATGCTGTTAGGGATGAACCCGCCATCCGGCAGGAAACGACAACGATGGAGACAGACTGTCCAAAAGATGAGCAGTGCCCGATAGTACCCGAGCCGGACAAGCTCCCGACCGTGCCGGAAGTGGTGCAAAGTCAATCCACACCCGAAGCCCCACCGGAAGCCGACCGAAGCGACGAACCGGACAAACCGAACGGCACCCTCTCCAAGCGGCAGCGC-AAAAAGCTGCTCAAGCTAGAGAATTGGGAGCAGCGGAAAAAGGAAAAGCGCCAGAAGGAGAAGGAAAAGATGAAGGCGAAGCGG-CTGGAAGCAATCCAGCAGGGGCTGCCGTGTGCGCACCGGTCCGAGCCGGAAGGAGCTGAAGCGGCGAAAGGTGAGCTACGGCGAGGCGACGATCGAGGTCGCTGTCGACCTGAGCTTCGACCAGCTGATGATCGACAAGGATGTGGCCAAGTGTGTAAAGCAGCTGCTGCGCATGTACACGCTCAACCGGCGCTCGGTTCGCCCGGTGCCGCTGCATTTCGTCGGGATCGAACCGGGCGGTGCGGTCGAGCGGCATCTCGCCCGC]
[+] EMBL BM589824 [ CCGCCCACG CGTCCG CGCTTTTTTGCCCAAAAGGTAGTGTATCGATTTTGTAACAGGAATCCGTTATTTCCTTGCTTGCTCTAACTCTAAGGCGCCCTAACAATCGGTGCAGCGGCGAGAACGAGCGGCGTAAACATAAACACCATCCTGAACCCTTTCCCAGAGGCCGGCCGCGTGCACGTGTGTAATTTTGTAGCTGCCTGCGCCACAGAAGAGCAACGAAACGAACGAGAACCAATACTGCCAAATAAAAGCGATACCTGTTTCGCAAGTACTACAGGATGATATGTAGGGCCACATTAGCAACGAAACAAGCTCTGTAACGACAAGAAACAAAGGCCCCCAGAATGGAAGAAAGTTTATCTAATGCTGTTAGGGATGAACCCGCCATCCGGCAGGAAACGACAACGATGGAGACAGACTGTCCAAAAGATGAGCAGTGCCCGATAGTACCCGAGCCGGACAAGCTCCCGACCGTGCCGGAAGTGGTGCAAAGTCAATCCACACCCGAAGCCCCACCGGAAGCCGACCGAAGCGACGAACCGGACAAACCGAACGGCACCCTCTCCAAGCGGCAGCGC AAAAAGCTGCTCAAGCTAGAGAATTGGGAGCAGCGGAAAAAGGAAAAGCGCCAGAAGGAGAAGGAAAAGATGAAGGCGAAGCGG CTGGAAGCAATC ]
[+] EMBL AL932900 [gaatCCCNCGAGGTCAGAACGCTTTTTTGCCC AAAGGTAGTGTATCGATTTTGTAACAGGAATCCGTTATTTCCTTGCTTGCTCTAACTCTAAGGCGCCCTAACAATCGGTGCAGCGGCGAGAACGAGCGGCGTAAACATAAACACCATCCTGAACCCTTTCCCAGAGGCCGGCCGCGTGCACGTGTGTAATTTTGTAGCTGCCTGCGCCACAGAAGAGCAACGAAACGAACGAGAACCAATACTGCCAAATAAAAGCGATACCTGTTTCGCAAGTACTACAGGATGATATGTAGGGCCACATTAGCAACGAAACAAGCTCTGTAACGACAAGAAACAAAGGCCCCCAGAATGGAAGAAAGTTTATCTAATGCTGTTAGGGATGAACCCGCCATCCGGCAGGAAACGACAACGATGGAGACAGACTGTCCAAAAGATGAGCAGTGCCCGATAGTACCCGAGCCGGACAAGCTCCCGACCGTGCCGGAAGTGGTGCAAAGTCAATCCACACCCGAAGCCCCACCGGAAGCCGACCGAAGCGACGAACCGGACAAACCGAACGG ACCCTCTCCAAGCGGCAGCGC AAAAAGCTGCTCAAGCTAGAGAATTGGGAGCAGCGGAAAA ]
[+] EMBL CNS096MA [ CGTTATTTCCTTGCTTGCTCTAACTCTAAGGCGCCCTAACAATCGGTGCAGCGGCGAGAACGAGCGGCGTAAACATAAACACCATCCTGAACCCTTTCCCAGAGGCCGGCCGCGTGCACGTGTGTAATTTTGTAGCTGCCTGCGCCACAGAAGAGCAACGAAACGAACGAGAACCAATACTGCCAAATAAAAGCGATACCTGTT ]
[+] EMBL CNS08S52 [ TTAGGGATGAA CCGCCATCCGGCAGGAAACGACAACGATGGAGACAGACTGTCCAAAAGATGAGCAGTGCCCGATAGTACCCGAGCCGGACAAGCTCCCGACCGTGCCGGAAGTGGTGCAAAGTCAATCCACACCCGAAGCCCCACCGGAAGCCGACCGAAGCGACGAACCGGACAAACCGAACGGCACCCTCTCCAAGCGGCAGCGCAAAAAAGCTGCTCAAGCTAGAGAATTGGGAGCAGCGGAAAAAGGAAAAGCGCCAGAAGGAGAAGGAAAAGATGAAGGCGAA CGGCCTGGAAGCAATCCAGCAGGGGCTGCCGTGTGCGCACCGGTCCGAGCCGGAAGGAGCTGAAGCGGCGAAAGGTGAGCTACGGCGAGGCGACGATCGAGGTCGCTGTCGACCTGAGCTTCGACCAGCTGATGATCGACAAGGATGTGGCCAAGTGTGTAAAGCAGCTGCTGCGCATGTACACGCTCAACCGGCGCTCGGTTCGCCCGGTGCCGCTGCATTTCGTCGGGATCGAACCGGGCGGTGCGGTCGAGCGGCATCTCGCCCGC]
consensusID : consensus_7923#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 229 fasta sequence
[CGAGAAATAAAAAACTGATTCTGTACAATTCAACCGACAAAACTGTTCAACCGCTCTGCTCGGCGGTTGCCTGGCAGTCCTCCGCATTGCCACTCTCCGGCGCGTTCGCACCATCCTGCGTGGCCACCGGCACCGTCTTCGGCGTGACGCCCTTGCGGGCCGGCAGCGCCTCCAGCAGCGTCTGCTGCCACTCCTTGCCCATGTGCACGTTCAGCAGTATCTCGAATTC]
[+] EMBL CNS096MB [CGAGAAATAAAAAACTGATTCTGTACAATTCAACCGACAAAACTGTTCAACCGCTCTGCTCGGCGGTTGCCTGGCAGTCCTCCGCATTGCCACTCTCCGGCGCGTTCGCACCATCCTGCGTGGCCACCGGCACCGTCTTCGGCGTGACGCCCTTGCGGGCCGGCAGCGCCTCCAGCAGCGTCTGCTGCCACTCCTTGCCCATGTGCACGTTCAGCAGTATCTCGAATTC]
[+] EMBL CNS08S53 [ ACCGACAAAACTGTTCAACCGCTCTGCTCGGCGGTTGCCTGGCAGTCCTCCGCATTGCCACTCTCCGGCGCGTTCGCACCATCCTGCGTGGCCACCGGCACCGTCTTCGGCGTGACGCCCTTGCGGGCCGGCAGC ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7923#0 TAAAAACATGCCGGAACGCTTTTTTGCCCAAAAGGTAGTGTATCGATTTTGTAACAGGAA 60
consensus_7923#1 GCCGCCCACGCGTCCGCGCTTTTTTGCCCAAAAGGTAGTGTATCGATTTTGTAACAGGAA 60
consensus_7923#2 ----------------------------CGAGAAATAAAAAACTGATTCTGTACAATTCA 32
* * * ** * **** **** * *
consensus_7923#0 TCCGTTAT--TTCCTTGCTTACTCTAACTCTAAGGCGCCCTAACAATCGGTGCAGCGGCG 118
consensus_7923#1 TCCGTTAT--TTCCTTGCTTGCTCTAACTCTAAGGCGCCCTAACAATCGGTGCAGCGGCG 118
consensus_7923#2 ACCGACAAAACTGTTCAACCGCTCTG-CTCGGCGGTTGCCTGGCAGTC--CTCCGCATTG 89
*** * * * **** *** ** *** ** ** * ** *
consensus_7923#0 AGAACGAGCGGCGTAAACATAAACACCATCCTGAACCCTTTCCCAGAGGCCGGCCGCGTG 178
consensus_7923#1 AGAACGAGCGGCGTAAACATAAACACCATCCTGAACCCTTTCCCAGAGGCCGGCCGCGTG 178
consensus_7923#2 CCACTCTCCGGCG----CGTTCGCACCATCCTG--CGTGGCCACCGGCACCGTCTTCG-- 141
* ***** * * ********** * * * * *** * **
consensus_7923#0 CACGTGTGTAATTTTGTAGCTGCCTGCGCCACAGAAGAGCAACGAAACGAACGAGAACCA 238
consensus_7923#1 CACGTGTGTAATTTTGTAGCTGCCTGCGCCACAGAAGAGCAACGAAACGAACGAGAACCA 238
consensus_7923#2 -GCGTGACGCCCTTGCGGGCCGGCAGCGCCTCC----AGCAGCGT------CTGCTGCCA 190
**** ** ** * * ***** * **** ** * ***
consensus_7923#0 ATACTGCCAAATAAAAGCGAT-ACCTGTTTCGCAAGTACTACAGGATGATATGTAGGGCC 297
consensus_7923#1 ATACTGCCAAATAAAAGCGAT-ACCTGTTTCGCAAGTACTACAGGATGATATGTAGGGCC 297
consensus_7923#2 CTCCTTGCCCATGTGCACGTTCAGCAGTATCTCGAATTC--------------------- 229
* ** * ** ** * * * ** ** * * * *
consensus_7923#0 ACATTAGCAACGAAACAAGCTCTGTAACGACAAGAAACAAAGGCCCCCAGAATGGAAGAA 357
consensus_7923#1 ACATTAGCAACGAAACAAGCTCTGTAACGACAAGAAACAAAGGCCCCCAGAATGGAAGAA 357
consensus_7923#2 ------------------------------------------------------------
consensus_7923#0 AGTTTATCTAATGCTGTTAGGGATGAACCCGCCATCCGGCAGGAAGCGACAACGATGGAG 417
consensus_7923#1 AGTTTATCTAATGCTGTTAGGGATGAACCCGCCATCCGGCAGGAAACGACAACGATGGAG 417
consensus_7923#2 ------------------------------------------------------------
consensus_7923#0 ACAGACTGTCCAAAAGATGAGCAGTGCCCGATAGTACCCGAGCCGGACAAGCTCCCGACC 477
consensus_7923#1 ACAGACTGTCCAAAAGATGAGCAGTGCCCGATAGTACCCGAGCCGGACAAGCTCCCGACC 477
consensus_7923#2 ------------------------------------------------------------
consensus_7923#0 GTGCCGGAAGTGGTGCAAAGTCAATCCACACCCGAAGCCCCACCGGAAGCCGACCGAAGC 537
consensus_7923#1 GTGCCGGAAGTGGTGCAAAGTCAATCCACACCCGAAGCCCCACCGGAAGCCGACCGAAGC 537
consensus_7923#2 ------------------------------------------------------------
consensus_7923#0 GACGAACCGGACAAACCGAACGGCACCCTCTCCAAGCGGCAGCGCAAAAAGCTGCTCAAG 597
consensus_7923#1 GACGAACCGGACAAACCGAACGGCACCCTCTCCAAGCGGCAGCGCAAAAAGCTGCTCAAG 597
consensus_7923#2 ------------------------------------------------------------
consensus_7923#0 CTAGAGAATTGGGAGCAGCGGAAAAAGGAAAAGCGCCAGAAGGAGAAAGAAAAGATGAAG 657
consensus_7923#1 CTAGAGAATTGGGAGCAGCGGAAAAAGGAAAAGCGCCAGAAGGAGAAGGAAAAGATGAAG 657
consensus_7923#2 ------------------------------------------------------------
consensus_7923#0 GCGAA-CGACAGGAAGCAATCCAGCAGGGGCTGCCG-GTGCGCACCGGTCCGAGCCGGAA 715
consensus_7923#1 GCGAAGCGGCTGGAAGCAATCCAGCAGGGGCTGCCGTGTGCGCACCGGTCCGAGCCGGAA 717
consensus_7923#2 ------------------------------------------------------------
consensus_7923#0 GGAGCTGAAGCGGCGAAAGGTGAGCTACGGCGAGGCGACGATCGAGGTCGCTGTCGACCT 775
consensus_7923#1 GGAGCTGAAGCGGCGAAAGGTGAGCTACGGCGAGGCGACGATCGAGGTCGCTGTCGACCT 777
consensus_7923#2 ------------------------------------------------------------
consensus_7923#0 GAGCTTCGACCAGCTGATGATCGACAAGGTTGTGGCAATGCGGAGGACTGCCAGGCAACC 835
consensus_7923#1 GAGCTTCGACCAGCTGATGATCGACAAGGATGTGGCCAAGTG------TGTAAAGCAGCT 831
consensus_7923#2 ------------------------------------------------------------
consensus_7923#0 GCCGAGCAGAGCGCTTGAACAGTTTTGTCGGTTGAATTGTACAGAATCAGTTTTTTATTT 895
consensus_7923#1 GCT-------GCGCATGTACA-------CGCTCAACCGGCGCTCGGTTCGCCCGGTGCCG 877
consensus_7923#2 ------------------------------------------------------------
consensus_7923#0 CTTCGTTTTTTTATAGTCTTAATAGTGGCAGGATTATAAACAAACGTGTCCTTCTCTGAC 955
consensus_7923#1 CTGCATTTCGTCGGGATCGAACCG--GGCGGTGCGGTCGAGCGGCATCTCGCCCGC---- 931
consensus_7923#2 ------------------------------------------------------------
consensus_7923#0 GTTGCAGTGAAAAAAAAAAAAAAATTTAAAAAAAAAAAG 994
consensus_7923#1 ---------------------------------------
consensus_7923#2 ---------------------------------------
|
| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||