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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7934#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1753 fasta sequence
[CGGACAAAAATGTTCTTCCGTTTAGCGATTAATGAATTGCCAGAGTTATATTATAGCAAAAGCAGCAAGCAAGTTGGTTGGTTGGTTACGAACTTTAAGAAACGAGAAAAAAAAACGATTTATATCGCAAACGATGAAGTAAAACTTCATATCCGAGTAGCAAACTTCTTCTTAACTATATACAAAAACAATAACACTCTTTTTCCCGCAATCAATGCCAATACAATAACGCTCTACAATAGCCCCCAAGTAATATAATCATCCTTACAGCAATAATAGTG-TCGCCATTCCTCCTGCTATATAGTTGCGTTATACAGCATAGGACCTCATCATACGTACGACAGATCGCAGTTAAATACGACTGGGGCGGAAGCAAACATTTATCGCTAATTTTTGTTCTTCTTCTTCCTCTGTTTTACGTACTGCAAACAAATCATCTACAAAACACACATTCGCACACACGCATACAATAGCTTTATGTTAGGGAGCTTCTTAAGTACGTCGTTTCTTATTTGTATCCTTGACTAAGAGCTGCAGATTGATGTGTAAAGAGAGAAGTAAAGCGCACGCACGCAAGATGTTGCAACCGAATGTGTCTGTTCGTATGCACTGCTCCCTTGCAGGGACAGTTTCGTGGAACAAGCAGATTCCTTATTAGCTCTTGTTTGTTTAGAGAGGACTCCGGTTTATTGTTTTCGTTTATTCTTTATAGTCTATGCTTACGACGCCGCAGCCGGCAGCAACATTCGCTCTTGATGTGTGATTGTTCACAGTGCGCGGTGGGCAAAAGTGTACAAAGCAAGCAGCAAGATCGTGATGATGATGATGATGTTGATTGTGTAAATTTACTTTCTGTGAAGAAGTTGTGTGCGTGCGCGCGTGTGTATTACGCCACACCGAATGTGATGTAGTAGATGTGTAAAGCGGATTATAGAAAACAATTGCAACAATATGCTATGCCGTACATTAAAGAAAGTATATCATCCAAAATGACAAGTAGCCATCATGTTTCTATAATTGATTACGAGTAACTTGAAGCAAGCCGTTGGATAGAACGAAAGCAAAGGAATGGAACGAAAGTACTCACAAATCGTCGTAAACCACGTACACACTTTTCGTGTAGACGGGGAAGACAGCCAGCCAAGCCAGCGCGCGGGAGGATCTATCCGGTGATTTTAGTTTTAGTAAATCCCTATCAAAAAGGTATAGAGAAAGAGCAAACGCGTTCTATAAAAAGAAGTTATTTTCTCCCGATTATTATTTTAAGTTAGGAAAAAAAAGATGTCGGGGAAGGTAGAAACGAAAGAGATATACATACATAGAGACGGCTATGGAGCAATATATGATATCAGTGCAAGCGTGCACGACACATCTGGTTGCTAACAGCAACCGAAAGGGTGAACGTGGTCGCGTGTTTGTATATACTGGACATCACGGGAACACATGTGATGTGTGTGAGTGTTTGTGTGTGTTTGGATCCCTTTTAGCGTCTTTTCCCCCCTCCATTGAATGAACTTGATTAGAAACAGCAACAAAAGTATGTGGTATTTGTATTAATGAATTGGATGACAGAAACAGAACAACCCTAAAAAAAAGTGCCCGCCATTATTGTTTCCATTGTTTTCACACAATTGGTATATCACACATTGTTTGTTTGTGGGTGTTTAACAAGCAAAAGTACAACAAATATACTGATCGTAGTGAAATTTGCTGATATATAGTAAATATATGGAGCGCAGCTTTTCCGTTAGTT]
[+] EMBL BX622402 [CGGACAAAAATGTTCTTCCGTTTAGCGATTAATGAATTGCCAGAGTTATATTATAGCAAAAGCAGCAAGCAAGTTGGTTGGTTGGTTACGAACTTTAAGAAACGAGAAAAAAAAACGATTTATATCGCAAACGATGAAGTAAAACTTCATATCCGAGTAGCAAACTTCTTCTTAACTATATACAAAAACAATAACACTCTTTTTCCCGCAATCAATGCCAATACAATAACGCTCTACAATAGCCCCCAAGTAATATAATCATCCTTACAGCAATAATAGTG TCGCCATTCCTCCTGCTATATAGTTGCGTTATACAGCATAGGACCTCATCATACGTACGACAGATCGCAGTTAAATACGACTGGGGCGAAAGCAAACATTTATCGCTAATTTTTGTTCTTCTTCTTCCTCTGTTTTACGTACTGCAAACAAATCATCTACAAAACACACATTCGCACACACGCATACAATAGCTTTATGTTAGGGAGCTTCTTAAGTACGTCGTTTCTTATTTGTATCCTTGACTAAGAGCTGCAGATTGATGTGTAAAGAGAGAAGTAAAGCGCACGCACGCAAGATGTTGCAACCGAATGTGTCTGTTCGTANGCACTGCTCCCTTGCAGGGACAGTTTCGTGGAACAAGCAGATTCCTTATTAGCTCTTGGTTGGTTAGAGAGGA ]
[+] EMBL BM628562 [ ccgAATGCCAATACCATAACGCTCTACAATAGCCCCCAATTAATATAATCATCCTTACAGCAATAATAGTG TCGCCATTCCTCCTGCTATATAGTTGCGTTATACAGCATAGGACCTCATCATACGTACGACAGATCGCAGTTACATACGACTGGAGCGGAAGCAAACATTTATCGCTACTTTTTGTTCTTCTTCTTCCTCTGTTTTACGTACTGCAAACAAATCATCTACAAAACACACATTCGCACACACGCATACAATAGCTTTATGTTAGGGAGCTTCTTAAGTACGTCGTTTCTTATTTGTATCCTTGACTAAGAGCTGCAGATTGATGTGTAAAGAGAGAAGTAAAGCGCACGCACGCAAGATGTTGCAACCGAATGTGTCTGTTCGTAGGCACTGCTCCCTGGCAGGGACAGTTTCG ]
[+] EMBL CNS094WZ [ AGCAATAATAGTGCTCGCCATTCCTCCTGCTATATAGTTGCGTTATACAGCATAGGACCTCATCATACGTACGACAGAACGCAGTTACAT ]
[+] EMBL BM646646 [ ccgCAGATCGCAGATAAATACGACTGGGGCGGAAGCAAACATTTATCGCTATGTTTTGTTCTTCTTCT TCTGTTTTTCGTACTGCAAACAAATCATCTACAAAACACACATTCGCACACACGCATACAATAGCTTTATGTTAGGGAGCTGCTTAAGTACGTCGTTTCTTATTTGTATCCTTGGCTAAGAGCTGCAGATTGATGTGTAAAGAGAGAAGTAAAGCGCACGCACGCAAGATGTTGCAACTGAATGTGTCTGTTCGTATGCACTGCTCCCTTGTAGGGACAGTTTTGTGGAACAAGCAGATTCCTTATTAGCTCTTGTTTGTTTAGAGAGGACTCCGGTTTATTGTTTTCGTTTATTCTTTATAGTCTATGCTTACGACGCCGCAGCCGGCAGCAACATTCGCTCTTGATGTGTGATTGTTCACAGTGCGCGGTGGGCAAAAGTGTACAAAGCAAGCAGCAAGATCGTGATGATGATGATGATGTTGATTGTGTAAATTTACTTTCTGTGAAGAAGTTGTGTGCGTGCGCGCGTGTGTATTACGCCACACCGAATGTGATGTAGTAGATGTGTAAAGCGGATTATAGAAAACAATTGCAACAATATGCTATG ]
[+] EMBL BX613014 [ TTAGGGAGCTGCTTAAGTACGTCCTTTCTTATTTGTATCCTTGGCTAAGAGCTGCAGATTGATGTGTAAAGAGAGAAGTAAAGCGCACGCACGCAAGATGTTGCAACTGAATGTGTCTGTTCGTATGCACTGCTCCCTTGTAGGGACAGTTTTGTGGAACAAGCAGATTCCTTATTAGCTCTTGTTTGTTTAGAGAGGACTCCGGTTTATTGTTTTCGTTTATTCTTTATAGTCTATGCTTACGACGCCGCAGCCGGCAGCAACATTCGCTCTTGATGTGTGATTGTTCACAGTGCGCGGTGGGCAAAAGTGTACAAAGCAAGCAGCAAGATCGTGATGATGATGATGATGTTGATTGTGTAAATTTACTTTCTGTGAAGAAGTTGTGTGCGTGCGCGCGTGTGTATTACGCCACACCGAATGTGATGTAGTAGATGTGTAAAGCGGATTATAGAAAACAATTGCAACAATATGCTATGCCGTACATTAAAGAAAGTATATCATCCAAAATGACAAGTAGCCATCATGTTTCTATAATTGATTACGAGTAACTTGAAGCAAGCCGTTGGATAGAACGAAAGCAAAGGAATGGAACGAAAGTACTCACAAATCGTCGTAAACCACGTACACACTTTTCGTGTAGACGGGGAAGACAGCCAGCCAAGCCAGCGCGCGGGAGGATCTATCCGGTGATTTTAGTTTTAGTA ]
[+] EMBL BM588188 [ ccgCCACGTACACACTTTTCGTGTAGACGGGGAAGACAGCCAGCCAAGCCAGCGCGCGGGAGGATCTATCCGGTGATTTTAGTTTTAGTAAATCCCTATCAAAAAGGTATAGAGAAAGAGCAAACGCGTTCTATAAAAAGAAGTTATTTTCTCCCGATTATTATTTTAAGTTAGGAAAAAAAAGATGTCGGGGAAGGTAGAAACGAAAGAGATATACATACATAGAGACGGCTATGGAGCAATATATGATATCAGTGCAAGCGTGCACGACACATCTGGTTGCTAACAGCAACCGAAAGGGTGAACGTGGTCGCGTGTTTGTATATACTGGACATCACGGGAACACATGTGATGTGTGTGAGTGTTTGTGTGTGTTTGGATCCCTTTTAGCGTCTTTTCCCCCCTCCATTGAATGAACTTGATTAGAAACAGCAACAAAAGTATGTGGTATTTGTATTAATGAATTGGATGACAGAAACAGAACAACCCTAAAAAAAAGTGCCCGCCATTATTGTTTCCATTGTTTTCACACAATTGGTATATCACACATTGTTTGTTTGTGGGTGTTTAACAAGCAAAAGTACAACAAATATACTGATCGTAGTGAAATTTGCTGATATATAGTAAATATATGGAGCGCAGCTTTTCCGTTAGTT]
[-] EMBL CNS094X0 [ GATGTCGGGGAAGGTAGAAACGAAAGAGAT ATGCATAGAGAGGGCTATGGAGCTATATATGATATCAGTGCAAGCGTGCACGACACATCTGGTTGCTAACAGCAACCGAAAGGGTGAACGTGGTCGCGTGTTTGTATATACTGGACATTACGGGAATACATGGGATGTGTGTGAGTGTTTGTGTGTGTTTGGATCCTTTTTAGCGTCTCTTCCCCCCTCC ]
consensusID : consensus_7934#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 561 fasta sequence
[CCTCGCAGAATCGNCACGAGGTTGNGATTATAGAAAACAATTGCAACAATCATGCTATGCCGGTACATTAAAGAAAGTATATCATCCAAAATGACAAGTAGCCATCATGTTTCTATAATTGATTACGAGTAACTTGAAGCAAGCCGTTGGATAGAACGAAAGCAAAGGAATGGAACGAAAGTACTCACAAATCGTCGTAAACCACGTACACACTTTTCGTGTAGACGGGGAAGACAGCCAGCCAAGCCAGCGCGCGGGAGGATCTATCCGGTGATTTTAGTTTTAGTAAATCCTTATCAAAAAGGTAATAGAGAAAGAGCAAACGCGTTCTATAAAAAGAAGTTATTTTCTCCCGATTATTATCTTAAGTTGAGAAGAAAAAGATGTCGGGGAAGGTAGAAACGAAAGAGATATACACAGTGATGGCTATGGAGCAATATATGATATCAGTGCAAGCGTGCACGACACATCTGGTTGCTAACAGCAACCGAAAGGGTGAACGTGGTCGCGTGTTTGTATATACTGGACATCACGGGAACACATGGGATGTGTGTGACGTGT]
[+] EMBL BX469739 [CCTCGCAGAATCGNCACGAGGTTGNGATTATAGAAAACAATTGCAACAATCATGCTATGCCGGTACATTAAAGAAAGTATATCATCCAAAATGACAAGTAGCCATCATGTTTCTATAATTGATTACGAGTAACTTGAAGCAAGCCGTTGGATAGAACGAAAGCAAAGGAATGGAACGAAAGTACTCACAAATCGTCGTAAACCACGTACACACTTTTCGTGTAGACGGGGAAGACAGCCAGCCAAGCCAGCGCGCGGGAGGATCTATCCGGTGATTTTAGTTTTAGTAAATCCTTATCAAAAAGGTAATAGAGAAAGAGCAAACGCGTTCTATAAAAAGAAGTTATTTTCTCCCGATTATTATCTTAAGTTGAGAAGAAAAAGATGTCGGGGAAGGTAGAAACGAAAGAGATATACACAGTGATGGCTATGGAGCAATATATGATATCAGTGCAAGCGTGCACGACACATCTGGTTGCTAACAGCAACCGAAAGGGTGAACGTGGTCGCGTGTTTGTATATACTGGACATCACGGGAACACATGGGATGTGTGTGACGTGT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7934#0 CGGACAAAAATGTTCTTCCGTTTAGCGATTAATGAATTGCCAGAGTTATATTATAGCAAA 60
consensus_7934#1 ------------------------------------------------------------
consensus_7934#0 AGCAGCAAGCAAGTTGGTTGGTTGGTTACGAACTTTAAGAAACGAGAAAAAAAAACGATT 120
consensus_7934#1 ------------------------------------------------------------
consensus_7934#0 TATATCGCAAACGATGAAGTAAAACTTCATATCCGAGTAGCAAACTTCTTCTTAACTATA 180
consensus_7934#1 ------------------------------------------------------------
consensus_7934#0 TACAAAAACAATAACACTCTTTTTCCCGCAATCAATGCCAATACAATAACGCTCTACAAT 240
consensus_7934#1 ------------------------------------------------------------
consensus_7934#0 AGCCCCCAAGTAATATAATCATCCTTACAGCAATAATAGTGTCGCCATTCCTCCTGCTAT 300
consensus_7934#1 ------------------------------------------------------------
consensus_7934#0 ATAGTTGCGTTATACAGCATAGGACCTCATCATACGTACGACAGATCGCAGTTAAATACG 360
consensus_7934#1 ------------------------------------------------------------
consensus_7934#0 ACTGGGGCGGAAGCAAACATTTATCGCTAATTTTTGTTCTTCTTCTTCCTCTGTTTTACG 420
consensus_7934#1 ------------------------------------------------------------
consensus_7934#0 TACTGCAAACAAATCATCTACAAAACACACATTCGCACACACGCATACAATAGCTTTATG 480
consensus_7934#1 ------------------------------------------------------------
consensus_7934#0 TTAGGGAGCTTCTTAAGTACGTCGTTTCTTATTTGTATCCTTGACTAAGAGCTGCAGATT 540
consensus_7934#1 ------------------------------------------------------------
consensus_7934#0 GATGTGTAAAGAGAGAAGTAAAGCGCACGCACGCAAGATGTTGCAACCGAATGTGTCTGT 600
consensus_7934#1 ------------------------------------------------------------
consensus_7934#0 TCGTATGCACTGCTCCCTTGCAGGGACAGTTTCGTGGAACAAGCAGATTCCTTATTAGCT 660
consensus_7934#1 ------------------------------------------------------------
consensus_7934#0 CTTGTTTGTTTAGAGAGGACTCCGGTTTATTGTTTTCGTTTATTCTTTATAGTCTATGCT 720
consensus_7934#1 ------------------------------------------------------------
consensus_7934#0 TACGACGCCGCAGCCGGCAGCAACATTCGCTCTTGATGTGTGATTGTTCACAGTGCGCGG 780
consensus_7934#1 ------------------------------------------------------------
consensus_7934#0 TGGGCAAAAGTGTACAAAGCAAGCAGCAAGATCGTGATGATGATGATGATGTTGATTGTG 840
consensus_7934#1 ------------------------------------------------------------
consensus_7934#0 TAAATTTACTTTCTGTGAAGAAGTTGTGTGCGTGCGCGCGTGTGTATTACGCCACACCGA 900
consensus_7934#1 ------------------------------------------------------------
consensus_7934#0 ATGTGATGTAGTAGATGTGTAAAGCGGATTATAGAAAACAATTGCAACAAT-ATGCTATG 959
consensus_7934#1 -CCTCGCAGAATCGNCACGAGGTTGNGATTATAGAAAACAATTGCAACAATCATGCTATG 59
* * * * * ************************* ********
consensus_7934#0 CCG-TACATTAAAGAAAGTATATCATCCAAAATGACAAGTAGCCATCATGTTTCTATAAT 1018
consensus_7934#1 CCGGTACATTAAAGAAAGTATATCATCCAAAATGACAAGTAGCCATCATGTTTCTATAAT 119
*** ********************************************************
consensus_7934#0 TGATTACGAGTAACTTGAAGCAAGCCGTTGGATAGAACGAAAGCAAAGGAATGGAACGAA 1078
consensus_7934#1 TGATTACGAGTAACTTGAAGCAAGCCGTTGGATAGAACGAAAGCAAAGGAATGGAACGAA 179
************************************************************
consensus_7934#0 AGTACTCACAAATCGTCGTAAACCACGTACACACTTTTCGTGTAGACGGGGAAGACAGCC 1138
consensus_7934#1 AGTACTCACAAATCGTCGTAAACCACGTACACACTTTTCGTGTAGACGGGGAAGACAGCC 239
************************************************************
consensus_7934#0 AGCCAAGCCAGCGCGCGGGAGGATCTATCCGGTGATTTTAGTTTTAGTAAATCCCTATCA 1198
consensus_7934#1 AGCCAAGCCAGCGCGCGGGAGGATCTATCCGGTGATTTTAGTTTTAGTAAATCCTTATCA 299
****************************************************** *****
consensus_7934#0 AAAAGGTA-TAGAGAAAGAGCAAACGCGTTCTATAAAAAGAAGTTATTTTCTCCCGATTA 1257
consensus_7934#1 AAAAGGTAATAGAGAAAGAGCAAACGCGTTCTATAAAAAGAAGTTATTTTCTCCCGATTA 359
******** ***************************************************
consensus_7934#0 TTATTTTAAGTTAGGAAAAAAAAGATGTCGGGGAAGGTAGAAACGAAAGAGATATACATA 1317
consensus_7934#1 TTATCTTAAGTTGAGAAGAAAAAGATGTCGGGGAAGGTAGAAACGAAAGAGATATACAC- 418
**** ******* *** ****************************************
consensus_7934#0 CATAGAGACGGCTATGGAGCAATATATGATATCAGTGCAAGCGTGCACGACACATCTGGT 1377
consensus_7934#1 ---AGTGATGGCTATGGAGCAATATATGATATCAGTGCAAGCGTGCACGACACATCTGGT 475
** ** ***************************************************
consensus_7934#0 TGCTAACAGCAACCGAAAGGGTGAACGTGGTCGCGTGTTTGTATATACTGGACATCACGG 1437
consensus_7934#1 TGCTAACAGCAACCGAAAGGGTGAACGTGGTCGCGTGTTTGTATATACTGGACATCACGG 535
************************************************************
consensus_7934#0 GAACACATGTGATGTGTGTGA-GTGTTTGTGTGTGTTTGGATCCCTTTTAGCGTCTTTTC 1496
consensus_7934#1 GAACACATGGGATGTGTGTGACGTGT---------------------------------- 561
********* *********** ****
consensus_7934#0 CCCCCTCCATTGAATGAACTTGATTAGAAACAGCAACAAAAGTATGTGGTATTTGTATTA 1556
consensus_7934#1 ------------------------------------------------------------
consensus_7934#0 ATGAATTGGATGACAGAAACAGAACAACCCTAAAAAAAAGTGCCCGCCATTATTGTTTCC 1616
consensus_7934#1 ------------------------------------------------------------
consensus_7934#0 ATTGTTTTCACACAATTGGTATATCACACATTGTTTGTTTGTGGGTGTTTAACAAGCAAA 1676
consensus_7934#1 ------------------------------------------------------------
consensus_7934#0 AGTACAACAAATATACTGATCGTAGTGAAATTTGCTGATATATAGTAAATATATGGAGCG 1736
consensus_7934#1 ------------------------------------------------------------
consensus_7934#0 CAGCTTTTCCGTTAGTT 1753
consensus_7934#1 -----------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||