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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7936#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1341 fasta sequence
[CAAGTGTGCCAAGCGGCCTGTTTTCGTAGTAGCGTCCCTTCGATACAGACAACTGTGATTGAAATTGGCTTTCGACGTGCATAAACTCAGCTCCATACATCATGTCCGACCTAAAACAGTGCCCGTTCGAGGTGACGCATCTGATCGAGGGCAAATCGTTCGCAATGCATATCGTCAAGTGCCAACGA-CAACATCCGGACATCAAACTGGCCCGATGCCATCTCGACACGTCCCACCTGATGCGGGAGGAGGAGCTGCAGCAACACATGAAGACGTGCACGAGCCGTGGCCAGCTGGATGCGTACAAGTACAGCCTCACGACGGGGGCCGCTAGCCGTGTATCGAGCCTGCCCGATCCGGCCGACGATCTCATCATCAACACAACCGAACCGATCATACGAAGAGGAGGAGGAGCCGGCGGCGGCGGCGGTCGTGGTCGTGGTGGTGGCCGCGGTGGCACTACCAG-CACAAC-GGTCGGACAGACGTTGCTGGACGATACCGAGTGTTGGGACGATTCGGACTGCAAGGCGTACGATCCGCTGGAAAGCTGCCGAGCGAAAAAGAACGAAAATGCAGCCTTTATCACACCGAAGATAAATCAGTTTGTGGAGCAGCGAACGGCAGCCGCTGTGCTGAAGAACGACAGCGGGACGAAGCGAGAACCAACCTCAGACG-AAGAATTCGGTAGCAGTGCGCTGAACGAGCGCCAGAATGATCTTGAACAGTTTGGGCTGCGACGAAACGCTTCACACGGCGCGAATACTGGAAGAGTTGTCAGTGGCCGGTATGGCGAAATGAAGCAAGAACCAGGTAGCTCGGGCAGCAGGGAACGTGATGATAGACATTCGGGAGTGCGGTCCAACTCTCGCAGCGGGTATGAAGCGGGTGAACGGAACCCGTACAGTAGACGATCGGATAGCGGTGGGTATCACGATCGAGAGCGGCACGGATACGATCGTCGTAGCGATGGATATTCGAGCAGAGACCGGTACGACAGTCGGCACCGTA-GGAT-GGGTATGATTCGGAATCTAGGAGCTCTCGAGGATACGGTCGAAATGACGATGATGGTTCCCGCAACCGGGGACATGGCAACGATAGGTACCAACCGTACGGAGGTAGCTCCTATCGATCGCACAGAACGAGTGATTCCACCGAACGAGGTAGTGACTATTCTGCGAAATATCCAAACCACGAACGTGACCATTAATTTTAACGAAAAATCTGAACTGAAATAATGCTGTTAGCGGTACGAATTAGCATAGAACAATGTACAATGAAGAAAATGAATGGAATTTTTTTCGCGAATAAACATGCATACGGAAATTGCAAACGCTATCGTAG]
[+] EMBL CNS08QGJ [CAAGTGTGCCAAGCGGCCTGTTTTCGTAGTAGCGTCCCTTCGATACAGACAACTGTGATTGAAATTGGCTTTCGACGTGCATAAACTCAGCTCCATACATCATGTCCGACCTAAAACAGTGCCCGTTCGAGGTGACGCATCTGATCGAGGGCAAATCGTTCGCAATGCATATCGTCAAGTGCCAACGA CAACATCCGGACATCAAACTGGCCCGATGCCATCTCGACACGTCCCACCTGATGCGGGAGGAGGAGCTGCAGCAACACATGAAGACGTGCACGAGCCGTGGCCAGCTGGATGCGTACAAGTACAGCCTCACGACGGGGGCCGCTAGCCGTGTATCGAGCCTGCCCGATCCGGCCGACGATCTCATCATCAACACAACCGAACCGATCATACGAAGAGGAGGAGGAACCGGCGGCGGCGGCGGTCGTGGTCGTGGTGGTGGCCGCGGTGGCACTACCAG CACAAC GGTCGGACAGACGTTGCTGGACGATACCGAGTGTTGGGACGATTCGGACTGCAAGGCGTACGATCCGCTGGAAAGCTGCCGAGCGAAAAAGAACGAAAATGCAGCCTTTATCACACCGAAGATAAATCAGTTTGTGGAGCAGCGAACGGCTGCCGCTGTACTGAAGAACGACAGTGTGACGAAGCGAGAACCAACCTCGGACG AAGAATTCGGTA ]
[+] EMBL CNS09BE2 [ TTTTCGTAGTAGCGTCCCTTCGATACAGACAACTGTGATTGAAATTGGCTTTCGACGTGCATAAACTCAGCTCCATACATCATGTCCGACCTAAAACAGTGCCCGTTCGAGGTGACGCATCTGATCGAGGGCAAATCGTTCGCGATGCATATCGTCAAGTGCCAACGATCAACATCCGGACATCAAACTGGCCCGATGCCATCTCGACACGTCCCACCTGATGCGGGAGGAGGAGCTGCAGCAACACATGAAGACGTGCACAAGCCGTGGCCAGCTGGATGCGTACAAGTACAGCCTCACGACGGGGGCCGCTAGCCGTGTATCGAGTCTGCCCGATCCGGCCGACGATCTCATCATCAACACAACCGAACCGATCCTACGAAGAGGAGGAGGAGCCGGCGGAGGCGGCGGTCGTGGTCGTGGTGGTGGCCGCGGTGGCACTACCAGACACAACGGGTCGGACAGACGTTGCTGGACGATACCGAGTGTTGGGACGATTCGGACTGCAAGGCGTACGATCCGCTGGAAAGCTGCCGAGCGGAAAAGAACGAAAATGCAGCCTTTATCACACCGAAGATAAATCAGTTTGTGGAGCAGCGAACGGCAGCCGCTGTGCTGAAGAACGACAGCGGGACGAAGCGAGAACCAACCTCAGACG AAGAATTCGGTAGCAGTGCGCTGAACGAGCGCCAGAATGATCTTGAACAGTTTGGGCTGCGACGAAACGCTTCACACGGCGCGAATACTGGAAGAGTTGTCAGTGGCCGGTATGGCGAAATGAAGCAAGAACCAGGTAGCTCGGGCAGCAGGGAACGTGATGATAGACATTCGGGAGTGCGGTCCAACTCTCGCAGCGGGTATGAAGCGGGTGAACGGAACCCGTACAGTA ]
[+] EMBL BM607721 [ ccgCGTAGTAGCGTCCCTTCGATACAGACAACTGTGATTGAAATTGGCTTTCGACGTGCATAAACTCAGCTCCATACATCATGTCCGACCTAAAACAGTGCCCGTTCGAGGTGACGCATCTGATCGAGGGCAAATCGTTCGCGATGCATATCGTCAAGTGCCAACGA CAACATCCGGACATCAAACTGGCCCGATGCCATCTCGACACGTCCCACCTGATGCGGGAGGAGGAGCTGCAGCAACACATGAAGACGTGCACAAGCCGTGGCCAGCTGGATGCGTACAAGTACAGCCTCACGACGGGGGCCGCTAGCCGTGTATCGAGTCTGCCCGATCCGGCCGACGATCTCATCATCAACACAACCGAACCGATCCTACGAAGAGGAGGAGGAGCCGGCGGAGGCGGCGGTCGTGGTCGTGGTGGTGGCCGCGGTGGCACTACCAG CACAAC GGTCGGACAGACGTTGCTGGACGATACCGAGTGTTGGGACGATTCGGACTGCAAGGCGTACGATCCGCTGGAAAGCTGCCGAGCGAAAAAGAACGAAAATGCAGCCTTTATCACACCGAAGATAAATCAGTTTGTGGAGCAGCGAACGGCAGCCGCTGTGCTGAAGAACGACAGCGGGACGAAGCGAGAACCAACCTCAGACG AAGAATTCGGTAGCAGTGCGCTGAACGAGCGCCAGA ]
[+] EMBL BM614628 [ ccGCTTTCGACGTGCATAAACTCAGCTCCATACATCATGTCCGACCTAAAACAGTGCCCGTTCGAGGTGACGCATCTGATCGAGGGCAAATCGTTCGCAATGCATATCGTCAAGTGCCAACGA CAACATCCGGACATCAAACTGGCCCGATGCCATCTCGACACGTCCCACCTGATGCGGGAGGAGGAGCTGCAGCAACACATGAAGACGTGCACGAGCCGTGGCCAGCTGGATGCGTACAAGTACAGCCTCACGACGGGGGCCGCTAGCCGTGTATCGAGCCTGCCCGATCCGGCCGACGATCTCATCATCAACACAACCGAACCGATCATACGAAGAGGAGGAGGAGCCGGCGGCGGCGGCGGTCGTGGTCGTGGTGGTGGCCGCGGTGGCACTACCAG CACAAC GGTCGGACAGACGTTGCTGGACGATACCGAGTGTTGGGACGATTCGGACTGCAAGGCGTACGATCCGCTGGAAAGCTGCCGAGCGAAAAAGAACGAAAATGCAGCCTTTATCACACCGAAGATAAATCAGTTTGTGGAGCAGCGAACGGCAGCCGCTGTGCTGAAGAACGACAGCGGGACGAAGCGAGAACCAACCTCAGACGAAAAAATTCGGTAACAGTGCGCTGAACGAGCGCCAGAATG ]
[+] EMBL CNS095B9 [ TCACACCGAAGATAAATCAGTTTGTGGAGCAGCGAACGGGTGCCGCTGTACTGAAGAACGACAGTGGGACGAAGCGAGAACCAACCTCGGACG AAGAATTCGGTAGCAGTGCACTGAACGAGCGCCAGAATGATCTTGAACAGTTCGGGCTGCGACGAAACGCTTCACACGGCGCGAATGCTGGAAGAGTTGTCAGTGGCCGGTATGGCGAAATGAAGCAAGAACCAGGTAGCTCGGGCAGTAGGGAACGTGATGATAGACATTCCGGAGTGCGGTCCAACTCTCGCAGCGGGTATGAAGCGGGTGAACGGAACCCGTACAGTAGACGATCGGATAGCGGTGGGTATCACGATCGAGAGCGGCACGGATACGATCGTCGTAGCGATGGATATTCGAGCAGAGACCGGTACGACAGTCGGCACCGTA GGATGGGGTATGATTCGGAATCTAGGAGCTCTCGAGGATACGGTCGAAA ]
[-] EMBL CNS08QGK [ TAGCGATGGATATTCGAGCAGAGACCGGTACGACAGTCGGCACCGTAGGGAT GGGTATGATTCGGAATCTAGGAGCTCTCGAGGATACGGTCGAAATGACGATGATGGTTCCCGCAACCGGGGACATGGCAACGATAGGTACCAACCGTACGGAGGTAGCTCCTATCGATCGCACAGAACGAGTGATTCCACCGAACGAGGTAGTGACTATTCTGCGAAATATCCAAACCACGAACGTGACCATTAATTTTAACGAAAAATCTGAACTGAAATAATGCTGTTAGCGGTACGAATTAGCATAGAACAATGTACAATGAAGAAAATGAATGGAATTTTTTTCGCGAATAAACATGCATACGGA ]
[-] EMBL CNS095BA [ CCGTAGGGAT GGGTATGATTCGGAATCTAGGAGCTCTCGAGGATACGGTCGAAATGACGATGATGGTTCCCGCAACCGAGGACATGGCAACGATAGGTACCAACCGTACGGAGGTAGCTCCTATCGATCGCACAGAACGAGTGATTCCACCGAACGAGGTAGTGACTATTCTGCGAAATATCCAAACCACGAACGTGACCATTAATTTTAACGAAAAATTTGAACTGAAATACCGCTGTTAGCGGTACGACTTAGCATAGAACAATGTACAATGAAGAAAATGAATGGAATTTTTTTCGCGAATAAACACGCA ACGGAAATTGCAAACGCTATCGTAG]
consensusID : consensus_7936#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 632 fasta sequence
[AATCGCCCGAGGNTATACACTGCCAGCAAGTGTTCCAAGCGGCCTGTTTTCTGTAGTAGCTGTCCCTTCGATACAGACAACTGTGATTGAAATTGGCTTTCGACGTGCATAAACTCAGCTCCATACATCATGTCCGACCTAAAACAGTGCCCGTTCGAGGTGACGCATCTGATCGAGGTGCAAATCGTTCGCAATGCATATCGTCAAGTGCCAACGACAACATNCGGACATTCAAACTGGCTCGATGCCATCTCGACACGTCCCACCTTGGATGCCGGGAGGAGGAGCTGCAGCAACACATGAAGACGTGCACGANCCGTGGCCACTTGGATGCGTACAAGTACAGCTCACCGAACGGGGCCGCGTAGACCGTGTATCGAGCCTGCCGATCCTGGGCGACAGATCTCATCATCAACACAAACCGAACCGATCATACGAAGAGGAGGAGGAGCCGGCGGAGGCGGCGGTCGTGGGTCGGTAGGGTGGGTGGACCGGCGGATTGGGCACGTAACCCAGCACAACGAGGTCGCGACAAGAACGTTGCTGGGACNCGATACCGAGTGTTTGGGACGATTCCGGGACTGGCAAATGCGTACGATCCCGGCTGGGAAAGCTGCCGAGCGGAAAACGAA]
[+] EMBL AL932917 [AATCGCCCGAGGNTATACACTGCCAGCAAGTGTTCCAAGCGGCCTGTTTTCTGTAGTAGCTGTCCCTTCGATACAGACAACTGTGATTGAAATTGGCTTTCGACGTGCATAAACTCAGCTCCATACATCATGTCCGACCTAAAACAGTGCCCGTTCGAGGTGACGCATCTGATCGAGGTGCAAATCGTTCGCAATGCATATCGTCAAGTGCCAACGACAACATNCGGACATTCAAACTGGCTCGATGCCATCTCGACACGTCCCACCTTGGATGCCGGGAGGAGGAGCTGCAGCAACACATGAAGACGTGCACGANCCGTGGCCACTTGGATGCGTACAAGTACAGCTCACCGAACGGGGCCGCGTAGACCGTGTATCGAGCCTGCCGATCCTGGGCGACAGATCTCATCATCAACACAAACCGAACCGATCATACGAAGAGGAGGAGGAGCCGGCGGAGGCGGCGGTCGTGGGTCGGTAGGGTGGGTGGACCGGCGGATTGGGCACGTAACCCAGCACAACGAGGTCGCGACAAGAACGTTGCTGGGACNCGATACCGAGTGTTTGGGACGATTCCGGGACTGGCAAATGCGTACGATCCCGGCTGGGAAAGCTGCCGAGCGGAAAACGAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7936#0 --------------------------CAAGTGTGCCAAGCGGCCTGTTTTC-GTAGTAGC 33
consensus_7936#1 AATCGCCCGAGGNTATACACTGCCAGCAAGTGTTCCAAGCGGCCTGTTTTCTGTAGTAGC 60
******* ***************** ********
consensus_7936#0 -GTCCCTTCGATACAGACAACTGTGATTGAAATTGGCTTTCGACGTGCATAAACTCAGCT 92
consensus_7936#1 TGTCCCTTCGATACAGACAACTGTGATTGAAATTGGCTTTCGACGTGCATAAACTCAGCT 120
***********************************************************
consensus_7936#0 CCATACATCATGTCCGACCTAAAACAGTGCCCGTTCGAGGTGACGCATCTGATCGAGG-G 151
consensus_7936#1 CCATACATCATGTCCGACCTAAAACAGTGCCCGTTCGAGGTGACGCATCTGATCGAGGTG 180
********************************************************** *
consensus_7936#0 CAAATCGTTCGCAATGCATATCGTCAAGTGCCAACGACAACATCCGGACAT-CAAACTGG 210
consensus_7936#1 CAAATCGTTCGCAATGCATATCGTCAAGTGCCAACGACAACATNCGGACATTCAAACTGG 240
******************************************* ******* ********
consensus_7936#0 CCCGATGCCATCTCGACACGTCCCACCT--GATGC-GGGAGGAGGAGCTGCAGCAACACA 267
consensus_7936#1 CTCGATGCCATCTCGACACGTCCCACCTTGGATGCCGGGAGGAGGAGCTGCAGCAACACA 300
* ************************** ***** ************************
consensus_7936#0 TGAAGACGTGCACGAGCCGTGGCCAGCTGGATGCGTACAAGTACAGCCTCACGACGGGGG 327
consensus_7936#1 TGAAGACGTGCACGANCCGTGGCCACTTGGATGCGTACAAGTACAGCTCACCGAACGGGG 360
*************** ********* ******************** *** ****
consensus_7936#0 CCGC-TAG-CCGTGTATCGAGCCTGCCCGATCCGGCCGAC-GATCTCATCATCAACACAA 384
consensus_7936#1 CCGCGTAGACCGTGTATCGAGCCTGCCGATCCTGGGCGACAGATCTCATCATCAACACAA 420
**** *** ****************** * ** **** *******************
consensus_7936#0 -CCGAACCGATCATACGAAGAGGAGGAGGAGCCGGCGGCGGCGGCGGTCGTGG-TCGTGG 442
consensus_7936#1 ACCGAACCGATCATACGAAGAGGAGGAGGAGCCGGCGGAGGCGGCGGTCGTGGGTCGGTA 480
************************************* ************** ***
consensus_7936#0 TGGTGGCCG---CGGTGG------CAC-TA--CCAGCACAACG--GTCG-GACAG--ACG 485
consensus_7936#1 GGGTGGGTGGACCGGCGGATTGGGCACGTAACCCAGCACAACGAGGTCGCGACAAGAACG 540
***** * *** ** *** ** *********** **** **** ***
consensus_7936#0 TTGCTGG---ACGATACCGAGTGTT-GGGACGATTC--GGACTGC--AAGGCGTACGATC 537
consensus_7936#1 TTGCTGGGACNCGATACCGAGTGTTTGGGACGATTCCGGGACTGGCAAATGCGTACGATC 600
******* ************** ********** ****** ** **********
consensus_7936#0 C--GCTGG-AAAGCTGCCGAGCGAAAAAGAACGAAAATGCAGCCTTTATCACACCGAAGA 594
consensus_7936#1 CCGGCTGGGAAAGCTGCCGAGCGGAAAACGAA---------------------------- 632
* ***** ************** **** *
consensus_7936#0 TAAATCAGTTTGTGGAGCAGCGAACGGCAGCCGCTGTGCTGAAGAACGACAGCGGGACGA 654
consensus_7936#1 ------------------------------------------------------------
consensus_7936#0 AGCGAGAACCAACCTCAGACGAAGAATTCGGTAGCAGTGCGCTGAACGAGCGCCAGAATG 714
consensus_7936#1 ------------------------------------------------------------
consensus_7936#0 ATCTTGAACAGTTTGGGCTGCGACGAAACGCTTCACACGGCGCGAATACTGGAAGAGTTG 774
consensus_7936#1 ------------------------------------------------------------
consensus_7936#0 TCAGTGGCCGGTATGGCGAAATGAAGCAAGAACCAGGTAGCTCGGGCAGCAGGGAACGTG 834
consensus_7936#1 ------------------------------------------------------------
consensus_7936#0 ATGATAGACATTCGGGAGTGCGGTCCAACTCTCGCAGCGGGTATGAAGCGGGTGAACGGA 894
consensus_7936#1 ------------------------------------------------------------
consensus_7936#0 ACCCGTACAGTAGACGATCGGATAGCGGTGGGTATCACGATCGAGAGCGGCACGGATACG 954
consensus_7936#1 ------------------------------------------------------------
consensus_7936#0 ATCGTCGTAGCGATGGATATTCGAGCAGAGACCGGTACGACAGTCGGCACCGTAGGATGG 1014
consensus_7936#1 ------------------------------------------------------------
consensus_7936#0 GTATGATTCGGAATCTAGGAGCTCTCGAGGATACGGTCGAAATGACGATGATGGTTCCCG 1074
consensus_7936#1 ------------------------------------------------------------
consensus_7936#0 CAACCGGGGACATGGCAACGATAGGTACCAACCGTACGGAGGTAGCTCCTATCGATCGCA 1134
consensus_7936#1 ------------------------------------------------------------
consensus_7936#0 CAGAACGAGTGATTCCACCGAACGAGGTAGTGACTATTCTGCGAAATATCCAAACCACGA 1194
consensus_7936#1 ------------------------------------------------------------
consensus_7936#0 ACGTGACCATTAATTTTAACGAAAAATCTGAACTGAAATAATGCTGTTAGCGGTACGAAT 1254
consensus_7936#1 ------------------------------------------------------------
consensus_7936#0 TAGCATAGAACAATGTACAATGAAGAAAATGAATGGAATTTTTTTCGCGAATAAACATGC 1314
consensus_7936#1 ------------------------------------------------------------
consensus_7936#0 ATACGGAAATTGCAAACGCTATCGTAG 1341
consensus_7936#1 ---------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||