cluster # 7943

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Anopheles gambiae
cluster # 7943 cluster # 7943 Sequences # 8 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7943#0 length = 600 sequences # 6

consensus_7943#1 length = 523 sequences # 2

consensusID : consensus_7943#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 600
fasta sequence

                              [AAAACACAAAAAAGATGCGGAATTCCTCGAGAACTGTTGGCCCACTGGATCAGTGTTCGATTGAACGATCTTCGCAAGCAACGGTTTTCCAGTTACCCTCTAAAGCT-----ACAACTCAAACAGTGAATTCAACATGAAACTCACGCTCGTTTTCCTGCTGTTCGCGCTGGTGTGTGCCGCGTACGCCCAAACCGATGCCGCCAAGGACGCGGCAAAGGATGCTACGGACAAGGTGAAGGATAAGGCTGCCCTGCCGGATGCGCCCAAGCTGGACAAGGATGCAGTGACGACGCCCGATCCAAAGGACGCCGCCAAGAAGGTGGAAGATGCGGCCGGCAAGGCGAAAGATCAGGCCGCCGAAGTGGGCAAGAAGCTGACCGACGCATTCAAGCTGTAAAGAACGACGTGCGGCAAAGATAGCTGCAACGATAACGTGGGAGTTTTATCGCTTCCCGCGCGCAATGCGAAACACACTCACATTTGACACAGTCCAATAAAAGTGGTGCTTGAGGGCAAAGAAGAAAACAAAAACCAACTTCATGCCACAGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGCCACATGTGCCCGGGCTGC]

[-] EMBL CNS08KYZ             [AAAACACAAAAAAGATGCGGAATTCCTCGAGAACTGTTGGCCCACTGGATCAGTGTTCGATTGAACGATCTTCGCAAGCAACGGTTTTCTAGTTACCCTCCAAAGCT     ACAAGTCAAACAGTGAATTCAACATGAAACTAACGCTCGTTTTCCTGCTGTTCGCGCTGGTTTGTGCCGCGTACGCCCAAACCGATGCCGCCAAGGACGCGGCAAAGGATGCTACGGACAAGGTGAAGGATAAGGCTGCCCTGCCGGATGCGCCCAAGCTGGACAAGGATGCAGTGACGACGCCCGATCCAAAGGACGCCGCCAAGAAGGTGGAAGATGTGGCCGGCAAGGCGAAAGATCAGGCCGCCGAAGTGGGCAAGAAGCTGACCGACGCATTCAAGCTGTAAAGAACGACGTGCGGCAAAGATAGCTGCAACGATAACGTGGGAGTTTTATCGCTTCCCGCGCGCAACGCGAAACAAACTCACATTTGACACAGTCCAATAAAAGTGGTGCTTGAGGGCAAAGAAGAAAACAAAAACCAACTTCATG                                                             ]
[+] EMBL AY187044             [                                                         CGATTGAACGATCTTCGCAAGCAACGGTTTTCCAGTTACCCTCTAAAGCT     ACAACTCAAACAGTGAATTCAACATGAAACTCACGCTCGTTTTCCTGCTGTTCGCGCTGGTGTGTGCCGCGTACGCCCAAACCGATGCCGCCAAGGACGCGGCAAAGGATGCTACGGACAAGGTGAAGGATAAGGCTGCCCTGCCGGATGCGCCCAAGCTGGACAAGGATGCAGTGACGACGCCCGATCCAAAGGACGCCGCCAAGAAGGTGGAAGATGCGGCCGGCAAGGCGAAAGATCAGGCCGCCGAAGTGGGCAAGAAGCTGACCGACGCATTCAAGCTGTAAAGAACGACGTGCGGCAAAGATAGCTGCAACGATAACGTGGGAGTTTTATCGCTTCCCGCGCGCAATGCGAAACACACTCACATTTGACACAGTCCAATAAAAGTGGTGCTTGAGGGCAAAGAAGAAAACAAAAACCAACTTCATGCCACAGTAAAA                                                  ]
[+] EMBL CNS08YP8             [                                                          GATTGAACGATCTTCGCAAGCAACGGTTTTCCAGTTACCCTCTAAAGCT     ACAACTCAAACAGTGAATTCAACATGAAACTCACGCTCGTTTTCCTGCTGTTCGCGCTGGTGTGTGCCGCGTACGCCCAAACCGATGCCGCCAAGGACGCGGCAAAGGATGCTACGGACAAGGTGAAGGATAAGGCTGCCCTGCCGGATGCGCCCAAGCTGGACAAGGATGCAGTGACGACGCCCGATCCAAAGGACGCCGCCAAGAAGGTGGAAGATGCGGCCGGCAAGGCGAAAGATCAGGCCGCCGAAGTGGGCAAGAAGCTGACCGACGCATTCAAGCTGTAAAGAACGACGTGCGGCAAAGATAGCTGCAACGATAACGTGGGAGTTTTATCGCTTCCCGCGCGCAATGCGAAACACACTCACATTTGACACAGTCCAATAAAAGTGGTGCTTGAGGGCAAAGAAGAAAACAAAAACCAACTTCATGCCACAGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGCCACATGTGCCCGGGCTGC]
[+] EMBL BM648569             [                                                           ccgGAACGATCTTTGCAAGCAACGGTTTTTCAGTTACCTTCTAAAGCTAAAACACAACTCAAACAGTGAATTCAACATGAAACTCACGCTCGTTTTCCTGCTGTTCGCGCTGGTGTGTGCCGCGTACGCCCAAACCGATGCCGCCAAGGACGCGGCAAAGGATGCTACGGACAAGGTGAAGGATAAGGCTGCCCTGCCGGATGCGCCCAAGCTGGACAAGGATGCAGTGACGACGCCCGATCCAAAGGACGCCGCCAAGAAGGTGGAAGATGCGGCTGGCAAGGCGAAAGATCAGGCCGCCGAAGTGGGCAAGAAGCTGACCGACGCATTCAAGCTGTAAAGAACGACGTGCGGCAAAGATAGCTGCAACGATAACGTGGGAGTTTTATCGCTTCCCGCGCGCAATGCGAAACACACTCACATTTGACACAGTCCAATAAAAGTGGTGCTTGAGGGCAAAGAAGAAAACAAAAACCAACTTCATGCCACAGTAAcgt                                                 ]
[+] EMBL BM628192             [                                                             ccgACGATCTTTGCAAGCAACGGTTTTCCAGTTACCTTCTAAAGCTAAAACACAACTCAAACAGTGAATTCAACATGAAACTCACGCTCGTTTTCCTGCTGTTCGCGCTGGTGTGTGCCGCGTACGCCCAAACCGATGCCGCCAAGGACGCGGCAAAGGATGCTACGGACAAGGTGAAGGATAAGGCTGCCCTGCCGGATGCGCCCAAGCTGGACAAGGATGCAGTGACGACGCCCGATCCAAAGGACGCCGCCAAGAAGGTGGAAGATGTGGCCGGCAAGGCGAAAGATCAGGCCGCCGAAGTGGGCAAGAAGCTGACCGACGCATTCAAGCTGTAAAGAACGACGTGCGGCAAAGATAGCTGCAACGATAACGTGGGAGTTTTATCGCTTCCCGCGCGCAACGCGAAACACACTCACATTTGACACAGTCCA                                                                                                              ]
[+] EMBL CNS08DXY             [                                                                        CGCAAGCAACGGTTTTCCAGTTACCCTCTAAAGCT     ACAACTCAAACAGTGAATTCAACATGAAACTCACGCTCGTTTTCCTGCTGTTCGCGCTGGTGTGTGCCGCGTACGCCCAAACCGATGCCGCCAAGGACGCGGCAAAGGATGCTACGGACAAGGTGAAGGATAAGGCTGCCCTGCCGGATGCGCCCAAGCTGGACAAGGATGCAGTGACGACGCCCGATCCAAAGGACGCCGCCAAGAAGGTGGAAGATGCGGCCGGCAAGGCGAAAGATCAGGCCGCCGAAGTGGGCAAGAAGCTGACCGACGCATTCAAGCTGTAAAGAACGACGTGCGGCAAAGATAGCTGCAACGATAACGTGGGAGTTTTATCGCTTCCCGCGCGCAATGCGAAACACACTCACATTTGACACAGTCCAATAAAAGTGGTGCTTGAGGGCAAAGAAGAAAACAAAAACCAACTTCATGCCACAGT AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGCCCCATGTGCCCGGGC   ]




>consensus_7943#0
AAAACACAAAAAAGATGCGGAATTCCTCGAGAACTGTTGGCCCACTGGATCAGTGTTCGA
TTGAACGATCTTCGCAAGCAACGGTTTTCCAGTTACCCTCTAAAGCTACAACTCAAACAG
TGAATTCAACATGAAACTCACGCTCGTTTTCCTGCTGTTCGCGCTGGTGTGTGCCGCGTA
CGCCCAAACCGATGCCGCCAAGGACGCGGCAAAGGATGCTACGGACAAGGTGAAGGATAA
GGCTGCCCTGCCGGATGCGCCCAAGCTGGACAAGGATGCAGTGACGACGCCCGATCCAAA
GGACGCCGCCAAGAAGGTGGAAGATGCGGCCGGCAAGGCGAAAGATCAGGCCGCCGAAGT
GGGCAAGAAGCTGACCGACGCATTCAAGCTGTAAAGAACGACGTGCGGCAAAGATAGCTG
CAACGATAACGTGGGAGTTTTATCGCTTCCCGCGCGCAATGCGAAACACACTCACATTTG
ACACAGTCCAATAAAAGTGGTGCTTGAGGGCAAAGAAGAAAACAAAAACCAACTTCATGC
CACAGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGCCACATGTGCCCGGGCTGC

consensusID : consensus_7943#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 523
fasta sequence

                              [TTCGATTGAACGATCTTCGCAAGCAACGGTTTTCTAGTTACCCTCCAAAGCTACAAGTCAAACAGTGAATTCAACATGAAACTCACGCTCGTTTTCCTGCTGTTCGCGCTGGTGTGTGCCGCGTACGCCCAAACCGATGCCGCCAAGGACGCGGCAAAGGATGCTACGGACAAGGTGAAGGATAAGGCTGCCCTGCCGGATGCGCCCAAGCTGGACAAGGATGCAGTGACGACGCCCGATCCAAAGGACGCCGCCAAGAAGGTGGAAGATGTGGCCGGCAAGGCGAAAGATCAGGCCGCCGAAGTGGGCAAGAAGCTGACCGACGCATTCAAGCTGTAAAGAACGACGTGCGGCAAAGATAGCTGCAACGATAACGTGGGAGTTTTATCGCTTCCCGCGCGCAACGCGAAACACACTCACATTTGACACAGTCCAATAAAAGTGGTGCTTGAGGGCAAAGAAGAAAACAAAAACCAACTTCATGCCACAGTAAGAAAAAAAAAAAAAAAAAAGGCACATGTGC]

[+] EMBL CNS08KYY             [TTCGATTGAACGATCTTCGCAAGCAACGGTTTTCTAGTTACCCTCCAAAGCTACAAGTCAAACAGTGAATTCAACATGAAACTCACGCTCGTTTTCCTGCTGTTCGCGCTGGTGTGTGCCGCGTACGCCCAAACCGATGCCGCCAAGGACGCGGCAAAGGATGCTACGGACAAGGTGAAGGATAAGGCTGCCCTGCCGGATGCGCCCAAGCTGGACAAGGATGCAGTGACGACGCCCGATCCAAAGGACGCCGCCAAGAAGGTGGAAGATGTGGCCGGCAAGGCGAAAGATCAGGCCGCCGAAGTGGGCAAGAAGCTGACCGACGCATTCAAGCTGTAAAGAACGACGTGCGGCAAAGATAGCTGCAACGATAACGTGGGAGTTTTATCGCTTCCCGCGCGCAACGCGAAACACACTCACATTTGACACAGTCCAATAAAAGTGGTGCTTGAGGGCAAAGAAGAAAACAAAAACCAACTTCATGCCACAGTAAGAAAAAAAAAAAAAAAAAAGGCACATGTGC]
[+] EMBL BM602796             [    ccgGAACGATCTTCGCAAGCAACGGTTTTCTAGTTACCCTCCAAAGCTACAAGTCAAACAGTGAATTCAACATGAAACTCACGCTCGTTTTCCTGCTGTTCGCGCTGGTGTGTGCCGCGTACGCCCAAACCGATGCCGCCAAGGACGCGGCAAAGGATGCTACGGACAAGGTGAAGGATAAGGCTGCCCTGCCGGATGCGCCCAAGCTGGACAAGGATGCAGTGACGACGCCCGATCCAAAGGACGCCGCCAAGAAGGTGGAAGATGTGGCCGGCAAGGCGAAAGATCAGGCCGCCGAAGTGGGCAAGAAGCTGACCGACGCATTCAAGCTGTAAAGAACGACGTGCGGCAAAGATAGCTGCAACGATAACGTGGGAGTTTTATCGCTTCCCGCGCGCAACGCGAAACACACTCACATTTGACACAGTCCAATAAAAGTGGTGCTTGAGGGCAAAGAAGAAAACAAAAACCAACTTCATGCCACAGT                                ]




>consensus_7943#1
TTCGATTGAACGATCTTCGCAAGCAACGGTTTTCTAGTTACCCTCCAAAGCTACAAGTCA
AACAGTGAATTCAACATGAAACTCACGCTCGTTTTCCTGCTGTTCGCGCTGGTGTGTGCC
GCGTACGCCCAAACCGATGCCGCCAAGGACGCGGCAAAGGATGCTACGGACAAGGTGAAG
GATAAGGCTGCCCTGCCGGATGCGCCCAAGCTGGACAAGGATGCAGTGACGACGCCCGAT
CCAAAGGACGCCGCCAAGAAGGTGGAAGATGTGGCCGGCAAGGCGAAAGATCAGGCCGCC
GAAGTGGGCAAGAAGCTGACCGACGCATTCAAGCTGTAAAGAACGACGTGCGGCAAAGAT
AGCTGCAACGATAACGTGGGAGTTTTATCGCTTCCCGCGCGCAACGCGAAACACACTCAC
ATTTGACACAGTCCAATAAAAGTGGTGCTTGAGGGCAAAGAAGAAAACAAAAACCAACTT
CATGCCACAGTAAGAAAAAAAAAAAAAAAAAAGGCACATGTGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7943#0      AAAACACAAAAAAGATGCGGAATTCCTCGAGAACTGTTGGCCCACTGGATCAGTGTTCGA 60
consensus_7943#1      -------------------------------------------------------TTCGA 5
                                                                             *****

consensus_7943#0      TTGAACGATCTTCGCAAGCAACGGTTTTCCAGTTACCCTCTAAAGCTACAACTCAAACAG 120
consensus_7943#1      TTGAACGATCTTCGCAAGCAACGGTTTTCTAGTTACCCTCCAAAGCTACAAGTCAAACAG 65
                      ***************************** ********** ********** ********

consensus_7943#0      TGAATTCAACATGAAACTCACGCTCGTTTTCCTGCTGTTCGCGCTGGTGTGTGCCGCGTA 180
consensus_7943#1      TGAATTCAACATGAAACTCACGCTCGTTTTCCTGCTGTTCGCGCTGGTGTGTGCCGCGTA 125
                      ************************************************************

consensus_7943#0      CGCCCAAACCGATGCCGCCAAGGACGCGGCAAAGGATGCTACGGACAAGGTGAAGGATAA 240
consensus_7943#1      CGCCCAAACCGATGCCGCCAAGGACGCGGCAAAGGATGCTACGGACAAGGTGAAGGATAA 185
                      ************************************************************

consensus_7943#0      GGCTGCCCTGCCGGATGCGCCCAAGCTGGACAAGGATGCAGTGACGACGCCCGATCCAAA 300
consensus_7943#1      GGCTGCCCTGCCGGATGCGCCCAAGCTGGACAAGGATGCAGTGACGACGCCCGATCCAAA 245
                      ************************************************************

consensus_7943#0      GGACGCCGCCAAGAAGGTGGAAGATGCGGCCGGCAAGGCGAAAGATCAGGCCGCCGAAGT 360
consensus_7943#1      GGACGCCGCCAAGAAGGTGGAAGATGTGGCCGGCAAGGCGAAAGATCAGGCCGCCGAAGT 305
                      ************************** *********************************

consensus_7943#0      GGGCAAGAAGCTGACCGACGCATTCAAGCTGTAAAGAACGACGTGCGGCAAAGATAGCTG 420
consensus_7943#1      GGGCAAGAAGCTGACCGACGCATTCAAGCTGTAAAGAACGACGTGCGGCAAAGATAGCTG 365
                      ************************************************************

consensus_7943#0      CAACGATAACGTGGGAGTTTTATCGCTTCCCGCGCGCAATGCGAAACACACTCACATTTG 480
consensus_7943#1      CAACGATAACGTGGGAGTTTTATCGCTTCCCGCGCGCAACGCGAAACACACTCACATTTG 425
                      *************************************** ********************

consensus_7943#0      ACACAGTCCAATAAAAGTGGTGCTTGAGGGCAAAGAAGAAAACAAAAACCAACTTCATGC 540
consensus_7943#1      ACACAGTCCAATAAAAGTGGTGCTTGAGGGCAAAGAAGAAAACAAAAACCAACTTCATGC 485
                      ************************************************************

consensus_7943#0      CACAGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGCCACATGTGCCCGGGCTGC 600
consensus_7943#1      CACAGTAAGAAAAAAAAAAAAAAAAAAGGCACATGTGC---------------------- 523
                      ******** ******************   * *