cluster # 796

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Anopheles gambiae
cluster # 796 cluster # 796 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_796#0 length = 644 sequences # 1

consensus_796#1 length = 622 sequences # 1

consensusID : consensus_796#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 644
fasta sequence

                              [CCGACTGCACCAGTGAATGGTGGCTTCGCAGTGAACCCCTGAGTGTTGGGAATGGCGTATTTTTAGCGTGCAAACCCCGTTACGCCTCTTCCCCGTGTTATATAATTAGCAGAGCGTACTTCGCGTCCTGCTGCAGTGGTGCAAAGTGCAGCATGCATCATGCATCCGTAACTGAGGCGACCTTTACGGAGAGGTTGTTGTTTGTGTGTGTGTGCGGCAGCAGTTGCATCTCGCCACGGTGCATACCATTTCGGCACGCTTCGTAATGGTTCGCTAAACTGCGTCGCTAAATCTTGTTTTGTCAGCTTGCCCGCACGCTATACCAACTGGTGGGCGCGGAATGGCGTAGTTGGTGTGATGGTCCTTCACCGTTTTCGTTTGTTTTTTTTTTTGTTTTGCTTTTCTGGTTGCTCGTTTACAAGATGTGATGGGTGTGAAGAATGGCTTGCTGAGAATGTCTGAGGAAGAGAGAAGGAGCCGGTAGGAGAATATTTCATGCACTGCCAAAACCGCTAGGAAAAACAATAACAAACCAGAGCAATCTCCCGAACAACTGGAACAAACACAAATAAACAAACAAACAAACGTTACAATAAGCTTTAAAAACTAATTCTGAAAAGGAAATGACTTAATTATACTATAGA]

[+] EMBL BM617625             [CCGACTGCACCAGTGAATGGTGGCTTCGCAGTGAACCCCTGAGTGTTGGGAATGGCGTATTTTTAGCGTGCAAACCCCGTTACGCCTCTTCCCCGTGTTATATAATTAGCAGAGCGTACTTCGCGTCCTGCTGCAGTGGTGCAAAGTGCAGCATGCATCATGCATCCGTAACTGAGGCGACCTTTACGGAGAGGTTGTTGTTTGTGTGTGTGTGCGGCAGCAGTTGCATCTCGCCACGGTGCATACCATTTCGGCACGCTTCGTAATGGTTCGCTAAACTGCGTCGCTAAATCTTGTTTTGTCAGCTTGCCCGCACGCTATACCAACTGGTGGGCGCGGAATGGCGTAGTTGGTGTGATGGTCCTTCACCGTTTTCGTTTGTTTTTTTTTTTGTTTTGCTTTTCTGGTTGCTCGTTTACAAGATGTGATGGGTGTGAAGAATGGCTTGCTGAGAATGTCTGAGGAAGAGAGAAGGAGCCGGTAGGAGAATATTTCATGCACTGCCAAAACCGCTAGGAAAAACAATAACAAACCAGAGCAATCTCCCGAACAACTGGAACAAACACAAATAAACAAACAAACAAACGTTACAATAAGCTTTAAAAACTAATTCTGAAAAGGAAATGACTTAATTATACTATAGA]




>consensus_796#0
CCGACTGCACCAGTGAATGGTGGCTTCGCAGTGAACCCCTGAGTGTTGGGAATGGCGTAT
TTTTAGCGTGCAAACCCCGTTACGCCTCTTCCCCGTGTTATATAATTAGCAGAGCGTACT
TCGCGTCCTGCTGCAGTGGTGCAAAGTGCAGCATGCATCATGCATCCGTAACTGAGGCGA
CCTTTACGGAGAGGTTGTTGTTTGTGTGTGTGTGCGGCAGCAGTTGCATCTCGCCACGGT
GCATACCATTTCGGCACGCTTCGTAATGGTTCGCTAAACTGCGTCGCTAAATCTTGTTTT
GTCAGCTTGCCCGCACGCTATACCAACTGGTGGGCGCGGAATGGCGTAGTTGGTGTGATG
GTCCTTCACCGTTTTCGTTTGTTTTTTTTTTTGTTTTGCTTTTCTGGTTGCTCGTTTACA
AGATGTGATGGGTGTGAAGAATGGCTTGCTGAGAATGTCTGAGGAAGAGAGAAGGAGCCG
GTAGGAGAATATTTCATGCACTGCCAAAACCGCTAGGAAAAACAATAACAAACCAGAGCA
ATCTCCCGAACAACTGGAACAAACACAAATAAACAAACAAACAAACGTTACAATAAGCTT
TAAAAACTAATTCTGAAAAGGAAATGACTTAATTATACTATAGA

consensusID : consensus_796#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 622
fasta sequence

                              [CCGCCCACGCGTCCGCCCACGCGTCCGCGTATTTTTAGCGTGCAAACCCCGTTACGCCTCTTCCCCGTGTTATATAATTAGCAGAGCGTACTTCGCGTCCTGCTGCAGTGGTGCAAAGTGCAGCATGCATCATGCATCCGTAACTGAGGCGACCTTTACGGGGAGGTTGTTGTTTGTGTGTGTGTATGTGCGGCAGCAGTTGCATCTCGCCACGGTGCATACCATTTCGGCACGCTTCGTAATGGTTCGCTAAACTGCGTCGCTAAATCTTGTTTTGTCAGCTTGCCCGCACTCTATACCAACTGGTGGGCGCGGAATGGCGTAGTTGGTGTGATGGTCCTTCACCGTTTTCGGTTGTTTTTTTTTTGTTTTTGCTTTTCTGGTTGCTCGTTTACAAGATGTGATGGGTGTGAAGAATGGCTTGCTGAGAATGTCTGAGGAAAAGAGAAGAAGCCGGTAGGAGAATATTTCATGCACTGCCAAAACCGCTAGGAAAAACAATAACAAACCAGAGCAATCTCCCGAACAACTGGAACAAACACAAATAAACAAACAAACAAACGTTACAATAAGCTTTAAAAACTAATTCTGAAAAGGAAATGACTTAATTATACTATAGAAG]

[+] EMBL BM647530             [CCGCCCACGCGTCCGCCCACGCGTCCGCGTATTTTTAGCGTGCAAACCCCGTTACGCCTCTTCCCCGTGTTATATAATTAGCAGAGCGTACTTCGCGTCCTGCTGCAGTGGTGCAAAGTGCAGCATGCATCATGCATCCGTAACTGAGGCGACCTTTACGGGGAGGTTGTTGTTTGTGTGTGTGTATGTGCGGCAGCAGTTGCATCTCGCCACGGTGCATACCATTTCGGCACGCTTCGTAATGGTTCGCTAAACTGCGTCGCTAAATCTTGTTTTGTCAGCTTGCCCGCACTCTATACCAACTGGTGGGCGCGGAATGGCGTAGTTGGTGTGATGGTCCTTCACCGTTTTCGGTTGTTTTTTTTTTGTTTTTGCTTTTCTGGTTGCTCGTTTACAAGATGTGATGGGTGTGAAGAATGGCTTGCTGAGAATGTCTGAGGAAAAGAGAAGAAGCCGGTAGGAGAATATTTCATGCACTGCCAAAACCGCTAGGAAAAACAATAACAAACCAGAGCAATCTCCCGAACAACTGGAACAAACACAAATAAACAAACAAACAAACGTTACAATAAGCTTTAAAAACTAATTCTGAAAAGGAAATGACTTAATTATACTATAGAAG]




>consensus_796#1
CCGCCCACGCGTCCGCCCACGCGTCCGCGTATTTTTAGCGTGCAAACCCCGTTACGCCTC
TTCCCCGTGTTATATAATTAGCAGAGCGTACTTCGCGTCCTGCTGCAGTGGTGCAAAGTG
CAGCATGCATCATGCATCCGTAACTGAGGCGACCTTTACGGGGAGGTTGTTGTTTGTGTG
TGTGTATGTGCGGCAGCAGTTGCATCTCGCCACGGTGCATACCATTTCGGCACGCTTCGT
AATGGTTCGCTAAACTGCGTCGCTAAATCTTGTTTTGTCAGCTTGCCCGCACTCTATACC
AACTGGTGGGCGCGGAATGGCGTAGTTGGTGTGATGGTCCTTCACCGTTTTCGGTTGTTT
TTTTTTTGTTTTTGCTTTTCTGGTTGCTCGTTTACAAGATGTGATGGGTGTGAAGAATGG
CTTGCTGAGAATGTCTGAGGAAAAGAGAAGAAGCCGGTAGGAGAATATTTCATGCACTGC
CAAAACCGCTAGGAAAAACAATAACAAACCAGAGCAATCTCCCGAACAACTGGAACAAAC
ACAAATAAACAAACAAACAAACGTTACAATAAGCTTTAAAAACTAATTCTGAAAAGGAAA
TGACTTAATTATACTATAGAAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_796#0      CCGACTGCACCAGTGAATGGTGGCTTCGCAGTGAACCCCTGAGTGTTGGGAATGGCGTAT 60
consensus_796#1      ----------------------------CCGCCCACGCGTCCGCCCACGCGTCCGCGTAT 32
                                                 * *   ** * *  *     *     ******

consensus_796#0      TTTTAGCGTGCAAACCCCGTTACGCCTCTTCCCCGTGTTATATAATTAGCAGAGCGTACT 120
consensus_796#1      TTTTAGCGTGCAAACCCCGTTACGCCTCTTCCCCGTGTTATATAATTAGCAGAGCGTACT 92
                     ************************************************************

consensus_796#0      TCGCGTCCTGCTGCAGTGGTGCAAAGTGCAGCATGCATCATGCATCCGTAACTGAGGCGA 180
consensus_796#1      TCGCGTCCTGCTGCAGTGGTGCAAAGTGCAGCATGCATCATGCATCCGTAACTGAGGCGA 152
                     ************************************************************

consensus_796#0      CCTTTACGGAGAGGTTGTTGTTTGTGTGTGTGT----GCGGCAGCAGTTGCATCTCGCCA 236
consensus_796#1      CCTTTACGGGGAGGTTGTTGTTTGTGTGTGTGTATGTGCGGCAGCAGTTGCATCTCGCCA 212
                     ********* ***********************    ***********************

consensus_796#0      CGGTGCATACCATTTCGGCACGCTTCGTAATGGTTCGCTAAACTGCGTCGCTAAATCTTG 296
consensus_796#1      CGGTGCATACCATTTCGGCACGCTTCGTAATGGTTCGCTAAACTGCGTCGCTAAATCTTG 272
                     ************************************************************

consensus_796#0      TTTTGTCAGCTTGCCCGCACGCTATACCAACTGGTGGGCGCGGAATGGCGTAGTTGGTGT 356
consensus_796#1      TTTTGTCAGCTTGCCCGCACTCTATACCAACTGGTGGGCGCGGAATGGCGTAGTTGGTGT 332
                     ******************** ***************************************

consensus_796#0      GATGGTCCTTCACCGTTTTCGTTTGTTTTTTTTTTTGTTTTGCTTTTCTGGTTGCTCGTT 416
consensus_796#1      GATGGTCCTTCACCGTTTTCGGTTGTTTTTTTTTTGTTTTTGCTTTTCTGGTTGCTCGTT 392
                     ********************* *************  ***********************

consensus_796#0      TACAAGATGTGATGGGTGTGAAGAATGGCTTGCTGAGAATGTCTGAGGAAGAGAGAAGGA 476
consensus_796#1      TACAAGATGTGATGGGTGTGAAGAATGGCTTGCTGAGAATGTCTGAGGAAAAGAGAAGAA 452
                     ************************************************** ******* *

consensus_796#0      GCCGGTAGGAGAATATTTCATGCACTGCCAAAACCGCTAGGAAAAACAATAACAAACCAG 536
consensus_796#1      GCCGGTAGGAGAATATTTCATGCACTGCCAAAACCGCTAGGAAAAACAATAACAAACCAG 512
                     ************************************************************

consensus_796#0      AGCAATCTCCCGAACAACTGGAACAAACACAAATAAACAAACAAACAAACGTTACAATAA 596
consensus_796#1      AGCAATCTCCCGAACAACTGGAACAAACACAAATAAACAAACAAACAAACGTTACAATAA 572
                     ************************************************************

consensus_796#0      GCTTTAAAAACTAATTCTGAAAAGGAAATGACTTAATTATACTATAGA-- 644
consensus_796#1      GCTTTAAAAACTAATTCTGAAAAGGAAATGACTTAATTATACTATAGAAG 622
                     ************************************************