These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7997#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1227 fasta sequence [AATTCTATATATTTAGAACTCGGTAAAGTCCGGTAAAGTTGAATATATGTAGGAATTCAAAAATCGATAAGAAAATACGAGAGTATTCTACTCCATAAGTGCGATGCAATAACATCTAATGGCACGAATACTGGGAGCAAAAGATTCGTCAATGGTCTAATGTAGTGGCTTGTGTGGATAAAGATGTTGGCAAGATGGTCCGGTGCGATTTTATCAAACGAAATTTTTTTTTATAATGAATGATTAGACTATGAAAATCATCCAAATAATCGCAATATAAACCGAAATAGCGTTTGACAGCTGCATCCTATAAAATCGTATAGGATGGGCGTTTCCACTGCCCTAAACGGCGTCCCATTACTCTCGATTTTCGACGAACGAGTTGATCGGCTTGGGCACTTGTTGCCAGACGAATTCAGTACATTTTTCTCATATTGCCACACCATTAGACCACTGACTTGACATGGTACATAAACTTACGCGATACAGTCTAATAGATGCGGTAACAAATGCGACTAACGCTTGCCTACGATGGCACTAGGAAACATTCCTTTCC-TAAAGCGTTT-CCGCTGTTTTGTGTTTCATCGTTTGTTCCTTAACATTAAGATTAA-TCGTACGTATTGTCGTACGGCCATTGTCGTTTAACCCTTGTAAGGAGCCTGCACTGGTTTAGTGTCACCCACCACTTGGTTGTAGCTGGGTGGATTCATCATCGCTGCAGAACCATTGGGTGGAACCGGATAGTACATTTGCGGAGGAAGTTCCGGAAATTGGAGA---------GTGTTCGCTTGCGGTGGTGGCATCGACGATTTTGGATCCGAGAACTGTTGCTGCTGCTGCATGTTGTGCTCGTGTGGCTGTTGCATCATGTACGGAGTTGGGTATACCGGGTACGTCACAGTGCCAGTCGGATGACGAAGAATGAATGCACCGGGTGGTGGCACAATTGTTGTAGATTGCGGTTGATCGCGAGGCTTTTCGGGGTTGTTAATTGTTGTGTGTGTCACTATCACGGCACGATCATTCTTGCAACAGCAACATTTGATGCAACCGTAAATGCAGAACCCAAATATTATGAAAATGGTAATTATGATAAGATCAATCATCGTTATCTGAATTATG---TACTCGCTGCGGAAATAATGG-AAAAAGCGACACACTCCTTTTGCCGATAGCTACTTTCAAGGCAAAACAACTTTACGAGGTGATCGCGGCTTTCGGACGCGTGGGCGG] [+] EMBL CNS09QYA [AATTCTATATATTTAGAACTCGGTAAAGTTCGGTAAAGTTGAATATATGTAGGAATTCAAAAATCGATAAGAAAATACGAGAGTATTCTACTCCATAAGTGCGATGCAATAACATCTAATGGCACGAATACTGGGAGCAAAAGATTCGTCAATGGTCTAATGTAGTGGCTTGTGTGGATAAAGATGTTGGCAAGATGGTCCGGTGCGATTTTATCAAACGAAATTTTTTTTTATAATGAATGATTAGACTATGAAAATCATCCAAATAATCGCAATATAAACCGAAATAGCGTTTGACAGCTGCATCCTATAAAATCGTATAGGATGGGCGTTTCCACTGCCCTAAACGGCGTCCCATTACTCTCGATTTTCGACGAACGAGTTGTTCGGCTTGGGCACTTGTTGCCAGACGAATTCAGTACATTTTTCTCATATTGCCACACCATTAGACCACTGACTTGACATGGTACATAAACTTACGCGATACAGTCTAATAGATGCGGTAACAAATGCGACTAACGCTTGCCTACGATGGCACTAGGAAACATTCCTTTCC TAAAGCGTTTCCCGCTGTTTTGTGTTTCATCGTTTGTTCCTTAACATTAAGATTAATTCGTACGTATTGTCGTACGGCCATTGTCGTTTAACCCTTGTAAGGAGCCTGCACTGGTTTAGTGTCACCCACCACTTGGTTGTAGCTGGGTGGATTCATCATCGCTGCAGAACCATTGGGTGGAACCGGATAGTACATTTGCGGAGGAAGTTCCGGAAATTGGAGA GTGTTCGCTTGCGGTGGTGGCATCGACGATTTTGGATCCGAGAACTGTTGCTGCTGCTGCATGTTGTGCTCGTGTGGCTGTTGCATCATGTACGGAGTTGGGTATACCGGGTACGTC ] [-] EMBL BX612802 [ aaaTATATATTTAGAACTCGGTAAAGTCCGGTAAAGTTGAATATATGTAGGAATTCAAAAATCGATAAGAAAATACGAGAGTATTCTACTCCATAAGTGCGATGCAATAACATCTAATGGCACGAATACTGGGAGCAAAAGATTCGTCAATGGTCTAATGTAGTGGCTTGTGTGGATAAAGATGTTGGCAAGATGGTCCGGTGCGATTTTATCAAACGAAATTTTTTTTTATAATGAATGATTAGACTATGAAAATCATCCAAATAATCGCAATATAAACCGAAATAGCGTTTGACAGCTGCATCCTATAAAATCGTATAGGATGGGCGTTTCCACTGCCCTAAACGGCGTCCCATTACTCTCGATTTTCGACGAACGAGTTGATCGGCTTGGGCACTTGTTGCCAGACGAATTCAGTACATTTTTCTCATATTGCCACACCAT ] [+] EMBL CNS08Y4D [ TATATATAGAACTCGGTAAAGTCCGGTAAAGTTGAATATATGTAGGAATTCAAAAATCGATAAGAAAATACGAGAGTATTCTACTCCATAAGTGCGATGCAATAACATCTAATGGCACGAATACTGGGAGCAAAAGATTCGTCAATGGTCTAATGTAGTGGCTTGTGTGGATAAAGATGTTGGCAAGATGGTCCGGTGCGATTTTATCAAACGAAATTTTTTTTTATAATGAATGATTAGACTATGAAAATCATCCAAATAATCGCAATATAAACCGAAATAGCGTTTGACAGCTGCATCCTATAAAATCGTATAGGATGGGCGTTTCCACTGCCCTAAACGGCGTCCCATTACTCTCGATTTTCGACGAAAGAGTTGATCGGCTTGGGCACTTGTTGCCAGACGAATTCAGTACATTTTTCTCATATTGCCACACCATTAGACCACTGACTTGACATGGTACATAAACTTACGCGATACAGTCTAATAAAAAAGGTAACAAATGCGACGCACGCTTGCCTACGATGGCACTAGGAAACATTCCTTTCC TAAAGCGTTT CCGCTGTTTTGTGTTTCATCGTTTGTTCCTTAACATTAAGATTAA TCGTACGTATTGTCGTACGGCCATTGTCGTTTAACCCTTGTAAGGAGCCTGCACTGGTTTAGTGTCACCCACCACTTGGTTGTAGCTGGGTGGATTCATCATCGCTGCAGAACCATTGGGTGGAACCGGATAGTACATTTGCGGAGGAAGTTCCGGAAATTGGAGA GTGTTCGCTTGCGGTGGTGGCATCGACGATTTTGGATCCGAGAACTGTTGCTGCTGCTGCATGTTGTGCTCGTGTGGCTGTAGCATCATGTACGGAGTTGGGTATACCGGGTACGTCACAGTTCCAGTCGGATGACGAAGAATGAATGCACCGGGTGGTGGCACAATTGTTGTAGATTGCGGTTGAACGCGAGGCTTTTCGGGGTTGTTAATTGTTGTTTGTTTCACT ] [-] EMBL CNS08Y4C [ AATGAATGATTAGACTATGAAAATCATCCAAATAATCGCAATATAAACCGAAATAGCGTTTGACAGCTGCATCCTATAAAATCGTATAGGATGGGCGTTTCCACTGCCCTAAACGGCGTCCCATTACTCTCGATTTTCGACGAACGAGTTGATCGGCTTGGGCACTTGTTGCCAGACGAATTCAGTACATTTTTCTCATATTGCCACACCATTAGACCACTGACTTGACATGGTACATAAACTTACGCGATACAGTCTAATAGATGCGGTAACAAATGCGACTAACGCTTGCCTACGATGGCACTAGGAAACATTCCTTTCC TAAAGCGTTT CCGCTGTTTTGTGTTTCATCGTTTGTTCCTTAACATTAAGATTAA TCGTACGTATTGTCGTACGGCCATTGTCGTTTAACCCTTGTAAGGAGCCTGCACTGGTTTAGTGTCACCCACCACTTGGTTGTAGCTGGGTGGATTCATCATCGCTGCAGAACCATTGTTTTTAACCGGATAGTACATTTGCGGAGGAAGTTCCGGAAATTGGAGA GTGTTCGCTTGCGGTGGTGGCATCGACGATTTTGGATCCGAGAACTGTTGCTGCTGCTGCATGTTGTGCTCGTTTGGCTGTTGCATCATGTACGGAGTTGGGTATACCGGGTACGTCACAGTGCCAGTCGGATGACGAAGAATGAATGCACCGGGTGGTGGCACAATTGTTGTAGATTGCGGTTGATCGCGAGGCTTTTCGGGGTTGTTAATTGTTGTGTGTGTCACTATCACGGCACGATCATTCTTGCAACAGCAACATTTGATGCAACCGTAAATGCAGAACCCAAATATTATGAAAATGGTAATTATGATAAGATCAATCATCGTTATCTGAATTATG TACTCGCTGCGGAAATAATGG AAAAGGCGACACACTCCTTTTGCCGATAGCTACTTTCAAGGCAAAACAACTTT ] [-] EMBL BM594220 [ CACTAGGAAACATTCCTTTCCTTAAAGCGTTT CCGCTGTTTTGTGTTTCATCGTTTGTTCCTTAACATTAAGATTAA TCGTACGTATTGTCGTACGGCCATTGTCGTTTAACCCTTGTAAGGAGCCTGCACTGGTTTAGTGTCACCCACCACTTGGTTGTAGCTGGGTGGATTCATCATCGCTGCAGAACCATTGGGTGGAACCGGATAGTACATTTGCGGAGGAAGTTCCGGAAATTGGAGA GTGTTCGCTTGCGGTGGTGGCATCGACGATTTTGGATCCGAGAACTGTTGCTGCTGCTGCATGTTGTGCTCGTGTGGCTGTTGCATCATGTACGGAGTTGGGTATACCGGGTACGTCACAGTGCCAGTCGGATGACGAAGAATGAATGCACCGGGTGGTGGCACAATTGTTGTAGATTGCGGTTGATCGCGAGGCTTTTCGGGGTTGTTAATTGTTGTGTGTGTCACTATCACGGCACGATCATTCTTGCAACAGCAACATTTGATGCAACCGTAAATGCAGAACCCAAATATTATGAAAATGGTAATTATGATAAGATCAATCATCGTTATCTGAATTATG TACTCGCTGCGGAAATAATGG AAAAAGCGACACACTCCTTTTGCCGATAGCTACTTTCAAGGCAAAACAACTTTACcgg ] [-] EMBL BM588363 [ CCTTTCC TAAAGCGTTT CCGCTGTTTTGTCTTTCATCGTTTGTTCCTTAACATTAAGATTA T GTAT GTATGGCCATTGTCGTTTAACCCTTGTAAGGAGCCTGTACTGGTTTAGTGTCACCCACCACTTGGTTGTAGCTGGGTGGATTCATCATCGCTGCAGAACCATTGGGTGGAACCGGATAGTACATTTGCGGAGGATGTTCCGGAAATTGGAGAGTAGTAGCCGTGTTCGCTTGCGGTGGTGGCATCGACGACTTTGGATCCGAGAAC TGCTGCTGCTGCATGTTCTGCTCGTGTGGCTGTTGCATCATGTACGGAGTTGGGTATACCGGGTACGTCACAGTGCCAGTCGGATGACGAAGAATGTAAGCACCGGGTGGCGGTACAATAGTTGTAGATTGCGGTTGATCGCGAGGCTTTTCGGGGTTGTTAATTGTTGTGTGTGTCACTATCACCGCACGATCATTCTTGCAACAGCAACATTTGATGCAACCGTAAATGCAGAACCCAAATATTATGAAAATGGTAATTATGATAAGATCAATCATCGTTATCTAAATTATGCACTACTCGCTGCAGAAATAGTGGAAAAAAACGACACACTCCTTTTGCCGATAGCTACTTTCAAGGCAAAACAACTTTACGAGGTGATCGCGG ] [-] EMBL BM609604 [ T CCGCTGTTTTGTGTTTCATCGTTTGTTCCTTAACATTAAGATTAA TCGTACGTATTGTCGTACGGCCATTGTCGTTTAACCCTTGTAAGGAGCCTGCACTGGTTTAGTGTCACCCACCACTTGGTTGTAGCTGGGTGGATTCATCATCGCTGCAGAACCATTGGGTGGAACCGGATAGTACATTTGCGGAGGAAGTTCCGGAAATTGGAGA GTGTTCGCTTGCGGTGGTGGCATCGACGATTTTGGATCCGAGAACTGTTGCTGCTGCTGCATGTTGTGCTCGTGTGGCTGTTGCATCATGTACGGAGTTGGGTATACCGGGTACGTCACAGTGCCAGTCGGATGACGAAGAATGAATGCACCGGGTGGTGGCACAATTGTTGTAGATTGCGGTTGATCGCGAGGCTTTTCGGGGTTGTTAATTGTTGTGTGTGTCACTATCACGGCACGATCATTCTTGCAACAGCAACATTTGATGCAACCGTAAATGCAGAACCCAAATATTATGAAAATGGTAATTATGATAAGATCAATCATCGTTATCTGAATTATG TACTCGCTGCGGAAATAATGG AAAAAGCGACACACTCCTTTTGCCGATAGCTACTTTCAAGGCAAAACAACTTTACGAGGTGATCGCGGCTTTCGGACGCGTGGGCGG] consensusID : consensus_7997#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 769 fasta sequence [CTTACGCGATACAGTCTAATAGATGCGGTAACAAATGCGACTAACGCTTGCCTACGATGGCACTAGGAAACATTCCTTTCCTAAAGCGTTTCCGCTGTTTTGTGTTTCATCGTTTGTTCCTTAACATTAAGATTAATCGTACGTATTGTCGTACGGCCATTGTCGTTTAACCCTTGTAAGGAGCCTGCACTGGTTTAGTGTCACCCACCACTTGGTTGTAGCTGGGTGGATTCATCATCGCTGCAGAACCATTGGGTGGAACCGGATAGTACATTTGCGGAGGAAGTTCCGGAAATTGGAGAGTGTTCGCTTGCGGTGGTGGCATCGACGATTTTGGATCCGAGAACTGTTGCTGCTGCTGCATGTTGTGCTCGTGTGGCTGTTGCATCATGTACGGAGAAGGGTATACCGGGTACGTCACAGTGCCAGTCGGATGACGAAGAATGAATGCACCGGGTGGTGGCACAATTGTTGTAGATTGCGGTTGATCGCGAGGCTTTTCGGGGTTGTTAATTGTTGTGTGTGTCACTATCACGGCACGATCATTCTTGCAACAGCAACATTTGATGCAACCGTAAATGCAGAACCCAAATATTATGAAAATGGTAATTATGATAAGATCAATCATCGTTATCTGAATTATGTACTCGCTGCGGAAATAATGGAAAAAGCGACACACTCCTTTTGCCGATAGCTACTTTCAAGGCAAAACAACTTTACGAGGTGATCGCGGCTTTGTGCGCATCAAGCGTGAAATTTACGAATAGAG] [-] EMBL CNS09QY9 [CTTACGCGATACAGTCTAATAGATGCGGTAACAAATGCGACTAACGCTTGCCTACGATGGCACTAGGAAACATTCCTTTCCTAAAGCGTTTCCGCTGTTTTGTGTTTCATCGTTTGTTCCTTAACATTAAGATTAATCGTACGTATTGTCGTACGGCCATTGTCGTTTAACCCTTGTAAGGAGCCTGCACTGGTTTAGTGTCACCCACCACTTGGTTGTAGCTGGGTGGATTCATCATCGCTGCAGAACCATTGGGTGGAACCGGATAGTACATTTGCGGAGGAAGTTCCGGAAATTGGAGAGTGTTCGCTTGCGGTGGTGGCATCGACGATTTTGGATCCGAGAACTGTTGCTGCTGCTGCATGTTGTGCTCGTGTGGCTGTTGCATCATGTACGGAGAAGGGTATACCGGGTACGTCACAGTGCCAGTCGGATGACGAAGAATGAATGCACCGGGTGGTGGCACAATTGTTGTAGATTGCGGTTGATCGCGAGGCTTTTCGGGGTTGTTAATTGTTGTGTGTGTCACTATCACGGCACGATCATTCTTGCAACAGCAACATTTGATGCAACCGTAAATGCAGAACCCAAATATTATGAAAATGGTAATTATGATAAGATCAATCATCGTTATCTGAATTATGTACTCGCTGCGGAAATAATGGAAAAAGCGACACACTCCTTTTGCCGATAGCTACTTTCAAGGCAAAACAACTTTACGAGGTGATCGCGGCTTTGTGCGCATCAAGCGTGAAATTTACGAATAGAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7997#0 AATTCTATATATTTAGAACTCGGTAAAGTCCGGTAAAGTTGAATATATGTAGGAATTCAA 60 consensus_7997#1 ------------------------------------------------------------ consensus_7997#0 AAATCGATAAGAAAATACGAGAGTATTCTACTCCATAAGTGCGATGCAATAACATCTAAT 120 consensus_7997#1 ------------------------------------------------------------ consensus_7997#0 GGCACGAATACTGGGAGCAAAAGATTCGTCAATGGTCTAATGTAGTGGCTTGTGTGGATA 180 consensus_7997#1 ------------------------------------------------------------ consensus_7997#0 AAGATGTTGGCAAGATGGTCCGGTGCGATTTTATCAAACGAAATTTTTTTTTATAATGAA 240 consensus_7997#1 ------------------------------------------------------------ consensus_7997#0 TGATTAGACTATGAAAATCATCCAAATAATCGCAATATAAACCGAAATAGCGTTTGACAG 300 consensus_7997#1 ------------------------------------------------------------ consensus_7997#0 CTGCATCCTATAAAATCGTATAGGATGGGCGTTTCCACTGCCCTAAACGGCGTCCCATTA 360 consensus_7997#1 ------------------------------------------------------------ consensus_7997#0 CTCTCGATTTTCGACGAACGAGTTGATCGGCTTGGGCACTTGTTGCCAGACGAATTCAGT 420 consensus_7997#1 ------------------------------------------------------------ consensus_7997#0 ACATTTTTCTCATATTGCCACACCATTAGACCACTGACTTGACATGGTACATAAACTTAC 480 consensus_7997#1 -------------------------------------------------------CTTAC 5 ***** consensus_7997#0 GCGATACAGTCTAATAGATGCGGTAACAAATGCGACTAACGCTTGCCTACGATGGCACTA 540 consensus_7997#1 GCGATACAGTCTAATAGATGCGGTAACAAATGCGACTAACGCTTGCCTACGATGGCACTA 65 ************************************************************ consensus_7997#0 GGAAACATTCCTTTCCTAAAGCGTTTCCGCTGTTTTGTGTTTCATCGTTTGTTCCTTAAC 600 consensus_7997#1 GGAAACATTCCTTTCCTAAAGCGTTTCCGCTGTTTTGTGTTTCATCGTTTGTTCCTTAAC 125 ************************************************************ consensus_7997#0 ATTAAGATTAATCGTACGTATTGTCGTACGGCCATTGTCGTTTAACCCTTGTAAGGAGCC 660 consensus_7997#1 ATTAAGATTAATCGTACGTATTGTCGTACGGCCATTGTCGTTTAACCCTTGTAAGGAGCC 185 ************************************************************ consensus_7997#0 TGCACTGGTTTAGTGTCACCCACCACTTGGTTGTAGCTGGGTGGATTCATCATCGCTGCA 720 consensus_7997#1 TGCACTGGTTTAGTGTCACCCACCACTTGGTTGTAGCTGGGTGGATTCATCATCGCTGCA 245 ************************************************************ consensus_7997#0 GAACCATTGGGTGGAACCGGATAGTACATTTGCGGAGGAAGTTCCGGAAATTGGAGAGTG 780 consensus_7997#1 GAACCATTGGGTGGAACCGGATAGTACATTTGCGGAGGAAGTTCCGGAAATTGGAGAGTG 305 ************************************************************ consensus_7997#0 TTCGCTTGCGGTGGTGGCATCGACGATTTTGGATCCGAGAACTGTTGCTGCTGCTGCATG 840 consensus_7997#1 TTCGCTTGCGGTGGTGGCATCGACGATTTTGGATCCGAGAACTGTTGCTGCTGCTGCATG 365 ************************************************************ consensus_7997#0 TTGTGCTCGTGTGGCTGTTGCATCATGTACGGAGTTGGGTATACCGGGTACGTCACAGTG 900 consensus_7997#1 TTGTGCTCGTGTGGCTGTTGCATCATGTACGGAGAAGGGTATACCGGGTACGTCACAGTG 425 ********************************** ************************ consensus_7997#0 CCAGTCGGATGACGAAGAATGAATGCACCGGGTGGTGGCACAATTGTTGTAGATTGCGGT 960 consensus_7997#1 CCAGTCGGATGACGAAGAATGAATGCACCGGGTGGTGGCACAATTGTTGTAGATTGCGGT 485 ************************************************************ consensus_7997#0 TGATCGCGAGGCTTTTCGGGGTTGTTAATTGTTGTGTGTGTCACTATCACGGCACGATCA 1020 consensus_7997#1 TGATCGCGAGGCTTTTCGGGGTTGTTAATTGTTGTGTGTGTCACTATCACGGCACGATCA 545 ************************************************************ consensus_7997#0 TTCTTGCAACAGCAACATTTGATGCAACCGTAAATGCAGAACCCAAATATTATGAAAATG 1080 consensus_7997#1 TTCTTGCAACAGCAACATTTGATGCAACCGTAAATGCAGAACCCAAATATTATGAAAATG 605 ************************************************************ consensus_7997#0 GTAATTATGATAAGATCAATCATCGTTATCTGAATTATGTACTCGCTGCGGAAATAATGG 1140 consensus_7997#1 GTAATTATGATAAGATCAATCATCGTTATCTGAATTATGTACTCGCTGCGGAAATAATGG 665 ************************************************************ consensus_7997#0 AAAAAGCGACACACTCCTTTTGCCGATAGCTACTTTCAAGGCAAAACAACTTTACGAGGT 1200 consensus_7997#1 AAAAAGCGACACACTCCTTTTGCCGATAGCTACTTTCAAGGCAAAACAACTTTACGAGGT 725 ************************************************************ consensus_7997#0 GATCGCGGCTTTCGGACGCGT-GGGCGG----------------- 1227 consensus_7997#1 GATCGCGGCTTT-GTGCGCATCAAGCGTGAAATTTACGAATAGAG 769 ************ * *** * *** |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||