cluster # 80

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 80 cluster # 80 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_80#0 length = 599 sequences # 1

consensus_80#1 length = 556 sequences # 1

consensusID : consensus_80#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 599
fasta sequence

                              [CGCACATGCTGCTCCTATTTATGTTAACATTGCTTAAACAACTAAACATAAATATACAGGCTTCTTGGTGCAGTTGATGCACCGGTTGCGCTAAAAGGATAAAAACAAACTCGCGCCACAAGGCAAAGGCGTTGGAAGAGTGGTTTTGTTGGTGAAAACAGAGCGAACAATAATGGCCGTACGGCGCACGTAAATGTAACCTATCCCAGCTGGCTCCCAGACAGCTAATATCGTTCGTGTAACAGTAGTAGTTGTAGTAGTAGTAGTAGTCCCTTGGCAGTAGCTCAAACGTAGTAGTTTTGCAAACAAAACCTAAAGTGTAAACGTGATCGTCTCGAAGAAACGACACTAAGTGCGGCGTACGATCATGTCCAGTCCACTGCGCTTTCCCCCGCATCACTTTCTATGTACACGGGATCGGCCTTTTGCGCCCCCTTCCCCCCCAAAACATGTGTTATGTAGTGTATGTGAGTCACTTGGTGGAGTCGCTTCGAATGTCCTCTCTCTCTCTCCTTCTCTCCCGGTAGGACTGCTGGAAGCGAAACCGCAACAAGAAAAACTGTTTAACGTACACTAAGCGAGTTGGGTTTGCTGCCCAC]

[+] EMBL BX466787             [CGCACATGCTGCTCCTATTTATGTTAACATTGCTTAAACAACTAAACATAAATATACAGGCTTCTTGGTGCAGTTGATGCACCGGTTGCGCTAAAAGGATAAAAACAAACTCGCGCCACAAGGCAAAGGCGTTGGAAGAGTGGTTTTGTTGGTGAAAACAGAGCGAACAATAATGGCCGTACGGCGCACGTAAATGTAACCTATCCCAGCTGGCTCCCAGACAGCTAATATCGTTCGTGTAACAGTAGTAGTTGTAGTAGTAGTAGTAGTCCCTTGGCAGTAGCTCAAACGTAGTAGTTTTGCAAACAAAACCTAAAGTGTAAACGTGATCGTCTCGAAGAAACGACACTAAGTGCGGCGTACGATCATGTCCAGTCCACTGCGCTTTCCCCCGCATCACTTTCTATGTACACGGGATCGGCCTTTTGCGCCCCCTTCCCCCCCAAAACATGTGTTATGTAGTGTATGTGAGTCACTTGGTGGAGTCGCTTCGAATGTCCTCTCTCTCTCTCCTTCTCTCCCGGTAGGACTGCTGGAAGCGAAACCGCAACAAGAAAAACTGTTTAACGTACACTAAGCGAGTTGGGTTTGCTGCCCAC]




>consensus_80#0
CGCACATGCTGCTCCTATTTATGTTAACATTGCTTAAACAACTAAACATAAATATACAGG
CTTCTTGGTGCAGTTGATGCACCGGTTGCGCTAAAAGGATAAAAACAAACTCGCGCCACA
AGGCAAAGGCGTTGGAAGAGTGGTTTTGTTGGTGAAAACAGAGCGAACAATAATGGCCGT
ACGGCGCACGTAAATGTAACCTATCCCAGCTGGCTCCCAGACAGCTAATATCGTTCGTGT
AACAGTAGTAGTTGTAGTAGTAGTAGTAGTCCCTTGGCAGTAGCTCAAACGTAGTAGTTT
TGCAAACAAAACCTAAAGTGTAAACGTGATCGTCTCGAAGAAACGACACTAAGTGCGGCG
TACGATCATGTCCAGTCCACTGCGCTTTCCCCCGCATCACTTTCTATGTACACGGGATCG
GCCTTTTGCGCCCCCTTCCCCCCCAAAACATGTGTTATGTAGTGTATGTGAGTCACTTGG
TGGAGTCGCTTCGAATGTCCTCTCTCTCTCTCCTTCTCTCCCGGTAGGACTGCTGGAAGC
GAAACCGCAACAAGAAAAACTGTTTAACGTACACTAAGCGAGTTGGGTTTGCTGCCCAC

consensusID : consensus_80#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 556
fasta sequence

                              [TCGATGTACTGTTCAACTGTTTCTATTTATATTTTACACAAACTCTTACCTACATAAAGTGGGGGTTTCCTCCCGAACTGGCGGGCAAGACTTTTCCAAACAAATTGCCTTTTTTTTACTAATAAATTACACTACAAACGTCGAACGTAACAAGCATTAAATCATTCGAAGGAAACAAAACATTAACATTGCTTAAACAACTAAACATAAATATACAGGCTTCTTGGTGCAGTTGATGCACCGGTTGCGCTAAAAGGATAAAAACAAACTCGCGCCACAAGGCAAAGGCGTTGGAAGAGTGGTTTTGTTGGTGAAAACAGAGCGAACAATAATGGCCGTACGGCGCACGTAAATGTAACCTATCCCAGCTGGCTCCCAGACAGCTAATATCGTTCGTGTAACAGTAGTAGTTGTAGTAGTAGTAGTAGTCCCTTGGCAGTAGCTCAAACGTAGTAGTTTTGCAAACAAAACCTAAAGTGTAAACGTGATCGTCTCGAAGAAACGACACTAAGTGCGGCGTACGATCATGTCCAGTCCACTGCGCTTTCCCCCGCAT]

[+] EMBL BX613828             [TCGATGTACTGTTCAACTGTTTCTATTTATATTTTACACAAACTCTTACCTACATAAAGTGGGGGTTTCCTCCCGAACTGGCGGGCAAGACTTTTCCAAACAAATTGCCTTTTTTTTACTAATAAATTACACTACAAACGTCGAACGTAACAAGCATTAAATCATTCGAAGGAAACAAAACATTAACATTGCTTAAACAACTAAACATAAATATACAGGCTTCTTGGTGCAGTTGATGCACCGGTTGCGCTAAAAGGATAAAAACAAACTCGCGCCACAAGGCAAAGGCGTTGGAAGAGTGGTTTTGTTGGTGAAAACAGAGCGAACAATAATGGCCGTACGGCGCACGTAAATGTAACCTATCCCAGCTGGCTCCCAGACAGCTAATATCGTTCGTGTAACAGTAGTAGTTGTAGTAGTAGTAGTAGTCCCTTGGCAGTAGCTCAAACGTAGTAGTTTTGCAAACAAAACCTAAAGTGTAAACGTGATCGTCTCGAAGAAACGACACTAAGTGCGGCGTACGATCATGTCCAGTCCACTGCGCTTTCCCCCGCAT]




>consensus_80#1
TCGATGTACTGTTCAACTGTTTCTATTTATATTTTACACAAACTCTTACCTACATAAAGT
GGGGGTTTCCTCCCGAACTGGCGGGCAAGACTTTTCCAAACAAATTGCCTTTTTTTTACT
AATAAATTACACTACAAACGTCGAACGTAACAAGCATTAAATCATTCGAAGGAAACAAAA
CATTAACATTGCTTAAACAACTAAACATAAATATACAGGCTTCTTGGTGCAGTTGATGCA
CCGGTTGCGCTAAAAGGATAAAAACAAACTCGCGCCACAAGGCAAAGGCGTTGGAAGAGT
GGTTTTGTTGGTGAAAACAGAGCGAACAATAATGGCCGTACGGCGCACGTAAATGTAACC
TATCCCAGCTGGCTCCCAGACAGCTAATATCGTTCGTGTAACAGTAGTAGTTGTAGTAGT
AGTAGTAGTCCCTTGGCAGTAGCTCAAACGTAGTAGTTTTGCAAACAAAACCTAAAGTGT
AAACGTGATCGTCTCGAAGAAACGACACTAAGTGCGGCGTACGATCATGTCCAGTCCACT
GCGCTTTCCCCCGCAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_80#0      ------------------------------------------------------------
consensus_80#1      TCGATGTACTGTTCAACTGTTTCTATTTATATTTTACACAAACTCTTACCTACATAAAGT 60
                                                                                

consensus_80#0      ------------------------------------------------------------
consensus_80#1      GGGGGTTTCCTCCCGAACTGGCGGGCAAGACTTTTCCAAACAAATTGCCTTTTTTTTACT 120
                                                                                

consensus_80#0      ----------------------------------------CGCACATGCTGCTCCTATTT 20
consensus_80#1      AATAAATTACACTACAAACGTCGAACGTAACAAGCATTAAATCATTCGAAGGAAACAAA- 179
                                                              **   *  *     *   

consensus_80#0      ATGTTAACATTGCTTAAACAACTAAACATAAATATACAGGCTTCTTGGTGCAGTTGATGC 80
consensus_80#1      ACATTAACATTGCTTAAACAACTAAACATAAATATACAGGCTTCTTGGTGCAGTTGATGC 239
                    *  *********************************************************

consensus_80#0      ACCGGTTGCGCTAAAAGGATAAAAACAAACTCGCGCCACAAGGCAAAGGCGTTGGAAGAG 140
consensus_80#1      ACCGGTTGCGCTAAAAGGATAAAAACAAACTCGCGCCACAAGGCAAAGGCGTTGGAAGAG 299
                    ************************************************************

consensus_80#0      TGGTTTTGTTGGTGAAAACAGAGCGAACAATAATGGCCGTACGGCGCACGTAAATGTAAC 200
consensus_80#1      TGGTTTTGTTGGTGAAAACAGAGCGAACAATAATGGCCGTACGGCGCACGTAAATGTAAC 359
                    ************************************************************

consensus_80#0      CTATCCCAGCTGGCTCCCAGACAGCTAATATCGTTCGTGTAACAGTAGTAGTTGTAGTAG 260
consensus_80#1      CTATCCCAGCTGGCTCCCAGACAGCTAATATCGTTCGTGTAACAGTAGTAGTTGTAGTAG 419
                    ************************************************************

consensus_80#0      TAGTAGTAGTCCCTTGGCAGTAGCTCAAACGTAGTAGTTTTGCAAACAAAACCTAAAGTG 320
consensus_80#1      TAGTAGTAGTCCCTTGGCAGTAGCTCAAACGTAGTAGTTTTGCAAACAAAACCTAAAGTG 479
                    ************************************************************

consensus_80#0      TAAACGTGATCGTCTCGAAGAAACGACACTAAGTGCGGCGTACGATCATGTCCAGTCCAC 380
consensus_80#1      TAAACGTGATCGTCTCGAAGAAACGACACTAAGTGCGGCGTACGATCATGTCCAGTCCAC 539
                    ************************************************************

consensus_80#0      TGCGCTTTCCCCCGCATCACTTTCTATGTACACGGGATCGGCCTTTTGCGCCCCCTTCCC 440
consensus_80#1      TGCGCTTTCCCCCGCAT------------------------------------------- 556
                    *****************                                           

consensus_80#0      CCCCAAAACATGTGTTATGTAGTGTATGTGAGTCACTTGGTGGAGTCGCTTCGAATGTCC 500
consensus_80#1      ------------------------------------------------------------
                                                                                

consensus_80#0      TCTCTCTCTCTCCTTCTCTCCCGGTAGGACTGCTGGAAGCGAAACCGCAACAAGAAAAAC 560
consensus_80#1      ------------------------------------------------------------
                                                                                

consensus_80#0      TGTTTAACGTACACTAAGCGAGTTGGGTTTGCTGCCCAC 599
consensus_80#1      ---------------------------------------