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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8011#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1485 fasta sequence
[GTGGCAAGCGCCCCTGTAGTAAGCAGATACTGGTAGTGTGTACTAAAAAAACCTGTGGAAAAAAATACTACTAAAAACAAAAATGTCACCGAACGCGTCAGAGCTCGGTCGTAAACGTTGTGAAACTGTAGATGAATTCTTGTTTTCTCTCCCATTCCCTCTGATTTCCCTTCCCTTTCTAACTAAAGCGTGAGCTATTTTCCAATCCTAAAACAAAAAACAAAACAAAAGAATATCTTCCATCCAGAAAACCTTAAAGAAACAAAATGTGTGAAATGAGACAAAAATGAGAC-AAAAAAAGGTTCGTTTGCGTATTTTCAACTAGGCAAATGAATGTTGTGCAATCAAAGAGAAAAAAAACGAAAAGAGTGGAAGTAACTAAAACAAAGCAAAAAAAGAAGA--AAACATTACGGAAATCGTGACATTGTAGAGTAGCTTTTAAGAGCAGCAAACTAGAGTTGAAGAACAACAAAAAACGCACCTTCATTAGGTGCAAAAGTGCTTCATGGATGGATGAATGTGTTTGTTTGAAAAAGATTTGTTTTACGCGTTAAGTTCATCTTTAGCGACTAGAGACGACTACTCCCATGCCTTCCGTATCCGTTACTTTCCTCTAAAACACGTACACACACGCATACAAAAATCA-TTCGGTGAAGTATAGAAAGTGGAGCTACTCGCATGATAATGCAAAATGTGGAAA--AGAAACCCTGCTC---CTCCTCC----TCCTT-CCCCA-GACACAAGTAGTGTTTAAGGCTAATTGGTGACGCGCCTACTGTGAGTGTGTCGTCTTGCATGCATGTAAAACTTTGTAAATAAATTGTTTAGTGATAAAAAGAAGGGAATGAAAAAGAAAACAGGAAGAGTGATGATGATGAAGCGAAAAGCGAAAAGAAAGAAGTTGTAAAGAAAACAGAGTGAAAAAAAACAAAGACGAAAACATAACAAACGATAAAGAAAAACGTCCGTGACTAAGGAAAGCAGTTAAAGAATGAAGGAGACAAATGAGATAAAAACAAAAGCGAAAACATTTGAACATGAGCGCAAGAAACATGACATTTTTTAAAACATTGAACTGGAACACGGAGATGATCACACATCTCCTTTCCGCT---CCCCCCCCCCTCCCCTCTTTTTCG-GCGGGCCCTTTGAAGGAAAAGTCATGGTGGGTAGAGGAGGGGTCGGTGAAACCCGTTTTTTTTTTGTAAATATACCAAAAACTAATTATAACGCAATATTTGACGTGAGACGAAACACATTAAAGCAGTGTGAAAGCTGTTGTGAATTTAAAACGTGGAAGAGAACTGCAGAGTAAACAGAAGAACACATTAGTAAGTGAGAATTGTAGTAGCGAAGGAAGTGAAAAAATGAAAAAGGAAAGCAAAGAGAAAGAGAGAGAGAGAGGGAGAAAAAACACCGGATCGAAACTCGAACGTAGTAGTTGTAGAAAGAATTAAAGAAAGTTTAGCACAGAACAAGTAAAACTGTGCGTCA]
[+] EMBL BX623206 [GTGGCAAGCGCCCCTGTAGTAAGCAGATACTGGTAGTGTGTACTAAAAAAACCTGTGGAAAAAAATACTACTAAAAACAAAAATGTCACCGAACGCGTCAGAGCTCGGTCGTAAACGTTGTGAAACTGTAGATGAATTCTTGTTTTCTCTCCCATTCCCTCTGATTTCCCTTCCCTTTCTAACTAAAGCGTGAGCTATTTTCCAATCCTAAAACAAAAAACAAAACAAAAGAATATCTTCCATCCAGAAAACCTTAAAGAAACAAAATGTGTGAAATGAGACAAAAATGAGAC AAAAAAAGGTTCGTTTGCGTATTTTCAACTAGGCAAATGAATGTTGTGCAATCAAAGAGAAAAAAAACGAAAAGAGTGGAAGTAACTAAAACAAAGCGAAAAAAGAAGAAGAAACATTACGGAAATCGTGACATTGTAGAGTAGCTTGTAAGAGCAGCAAACTAGAGTTGAACAACAACAAAAAACGCACCTTCATTTGGTGCAAAAGTGCTTCATGGATGGATGAATGTGTTTGTTTGAAAAAGATTTGTTTTACGCGTTAAGTTCATCTTTAGCGACTAGAGACGACTACTCCCATGCCTTCCGTATCCGTTACTTTCCTCTAAAACACGTACACACACGCATACAAAAATCATTTCGGTGAAGTATAGAAAGTGGAGCTACTCGC ]
[+] EMBL BX612789 [ GATACAAAAATGAGACAAAAAAAAGGTTCGTTTGCGTATTTTCAACTAGGCAAATGAATGTTGTGCAATCAAAGAG AAAAAAACGAAAAGAGTGGAAGTAACTAAAACAAAGCAAAAAAAGAAGA AAACATTACGGAAATCGTGACATTGTAGAGTAGCTTTTAAGAGCAGCAAACTAGAGTTGAAGAACAACAAAAAACGCACCTTCATTAGGTGCAAAAGTGCTTCATGGATGGATGAATGTGTTTGTTTGAAAAAGATTTGTTTTACGCGTTAAGTTCATCTTTAGCGACTAGAGACGACTACTTCCATGCCTTCCGTATCCGTTACTTTCCTCTAAAACACGTACACACACGCATACAAAAATCA TTCGGTAAAGTATAGAAAGTGGAGCTACTCGCATGATAATGCAAAATGTGGAAA AGAAACCCTGCTC CTCCTCC TCCTT CCCCA GACACAAGTAGTGTTTAAGGCTAATTGGTGACGCGCCTACTGTGAGTGTGTCGTCTTGCATGCATGTAAAACTTTGTAAATAAATT ]
[+] EMBL BX609630 [ GCAAATGAATGTTGTGCAATCAAAGAGAAAAAAAACGAAAAGAGTGGAAGTAACTAAAACAAAGCAAAAAAAGAAGA AAACATTACGGAAATCGTGACATTGTAGAGTAGCTTTTAAGAGCAGCAAACTAGAGTTGAAGAACAACAAAAAACGCACCTTCATTAGGTGCAAAAGTGCTTCATGGATGGATGAATGTGTTTGTTTGAAAAAGATTTGTTTTACGCGTTAAGTTCATCTTTAGCGACTAGAGACGACTACTCCCATGCCTTCCGTATCCGTTACTTTCCTCTAAAACACGTACACACACGCATACAAAAATCA TTCGGTAAAGTATAGAAAGTGGAGCTACTCGCATGATAATGCAAAATGTGGAAA AGAAACCCTGCTC CTCCTCC TCCTT CCCCA GACACAAGTAGTGTTTAAGGCTAATTGGTGACGCGCCTACTGTGAGTGTGTCGTCTTGCATGCATGTAAAACTTTGTAAATAAATTGTTTAGTGATAAAAAGAAGGGAATGAAAAAGAAAACAGGAAGAGTGATGATGATGAAGCGAAAAGCGAAAAGAAAGAAGTTGTAAAGAAAACAGAGTGAAAAAGAACAAAGACGAAAACATAACAAACGATAAAGAAAAACGTCCGTGACTAAGGAAAGCAGTT ]
[+] EMBL BM584457 [ ccgCGGTGAAGTATAGAAAGTGGAGCTACTCGCATGATAATGCAAAATGTGGAAAATAAAAACCCTGCTCCTACTCCTCCTTCATCCTT CCCCA GACACAAGTAGTGTTTAAGGCTAATTGGTGACGCGCCTACTGTGAGTGTGTCGTCTTGCATGCATGTAAAACTTTGTAAATATATTGTTTAGTGATAAAAAGAAGGGAATGAAAAAGAAAACAGGAAGAGTGATGATGATGAGGCGAAAAGCGATAAGAAAGAAGTTGTAAAGAAAACAGAGTGAAAAAAAACAAAGACGAAAATATAACAAACGATAAAGAAAAACGTCCGTGACTAAGGAAAGAAGTTAAAGAATGAAGGAGACAAATGAGATAAAAACAAAAGCGAAAACATTTGAACATGAGCGCAAGAAACATGACATTTTTTAAAACATTGAACTGGAACACGGAGATGATCACACATCTCCTTTCCGCTTCCCCCCCCCCCCTCCCCTCTTTTTCG ]
[+] EMBL BX619189 [ nCC TCCTTGCCCCAGGACACAAGTAGTGTTTAAGGCTAATTGGTGACGCGCCTACTGTGAGTGTGTCGTCTTGCATGCATGTAAAACTTTGTAAATAAATGGTTTAGTGATAAAAAGAAGGGAATGAAAAAGAAAACAGGAAGAGTGATGATGATGAAGCGAAAAGCGAAAA AAAGAAGTTGTAAAG ]
[-] EMBL AGA281153 [ aA GACACAAGTAGTGTTTAAGGGTAATTGGTGACGCGCATACTGTGCCTGTGTCGTCTTGCATGCATGTAAAACTCTGTAACTAACTTGTTTAGTGATACAAAGAAGGGAATGAAAAAGAAAACAGGAGGAGTGATGATGGTGAAGCGAAAAGCGAAAGGAAAGAACTTGTAAAGAAAACAGAGTGAAAAAAAA ]
[+] EMBL BX612407 [ AAACAGAGTGAAAAAAAACAAAGACGAAAACATAACAAACGATAAAGAAAAACGTCCGTGACTAAGGAAAGCAGTTAAAGAAAGAAGGAGACAAATGAGATAAAAACAAAAGCGAAAACATTTGAACATGAGCGCAAGAAACATGACATTTTTTAAAACATTGAACTGGTACACGGAGATGATCACACATCTCCTTTCCGCT CCGCCCCCCCTCCCCTC TTTTCGCGCGGGCCCTTTGAAGGAAAAGTCATGGTGGGTAGAGGAGGGGTCGGTGAAACCCGTTTTTTTTTTGTAAATATACCAAAAACTAATTATAACGCAATATTTGACGTGAGACGAAACACATTAAAGCAGTGTGAAAGCTGTTGTGAATTTAAAACGTGGAAGAGAACTGCAGAGTAAACAGAAGAACACATTAGTAAGTGAGAATTGTAGTAGCGAAGGAAGTGAAAAAATGAAAAAGGAAAGCAAAGAGAAAGAGAGAGAGAGAGGGAGAAAAAACACCGGATCGAAACTCGAACGTAGTAGTTGTAGAAAGAATTAAAGAAAGTTTAGCACAGAACAAGTAAAACTGTGCGTCA]
consensusID : consensus_8011#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 603 fasta sequence
[CCGAAAAAACGCACCTTCATTAGGTGCAAAAGTGCTTCATGGATGGATGAATGTGTTTGTTTGAAACAGATTTGTTTTACGTGTTAAGTTCATCTTTAGCGACTAGAGACGACTACTCCCATGCCTTCCGTATCCGTTACTTTCCTCTAAAACACGTACACACACGCATACAAAAATCATTCGGTAAAGTATAGAAAGTGGAGCTACTCGCATGATAATGCAAAATGTGGAAAAGAAACCCTGCTCCTCCTCCTCCTCCTTCCCCATCCTCCTTCCCCAGACACAAGTAGTGTTTAAGGCTAATTGGTGACGCGCCTACTGTGAGTGTGTCGTCTTGCATGCATGTAAAACTTTGTAAATATATTGTTTAGTGATAAAAAGAAGGGAATGAAAAAGAAAACAGGAAGAGTGATGATGATGATGCGAAAAGCGATAAAAAAGAAGTTGTAAAGAAAACAGAGTGAAAAAAAAAACAAAGACGAAAACATAACAAACGATAAAGAAAAACGTCCGTGACTAAGGAAAGAAGTTAAAGAAAGAAGGAGACAAATGAGATAAAAACAAAAGCGAAAACATTTGAACATGAACGCAAGAAACATGACA]
[+] EMBL BM626921 [CCGAAAAAACGCACCTTCATTAGGTGCAAAAGTGCTTCATGGATGGATGAATGTGTTTGTTTGAAACAGATTTGTTTTACGTGTTAAGTTCATCTTTAGCGACTAGAGACGACTACTCCCATGCCTTCCGTATCCGTTACTTTCCTCTAAAACACGTACACACACGCATACAAAAATCATTCGGTAAAGTATAGAAAGTGGAGCTACTCGCATGATAATGCAAAATGTGGAAAAGAAACCCTGCTCCTCCTCCTCCTCCTTCCCCATCCTCCTTCCCCAGACACAAGTAGTGTTTAAGGCTAATTGGTGACGCGCCTACTGTGAGTGTGTCGTCTTGCATGCATGTAAAACTTTGTAAATATATTGTTTAGTGATAAAAAGAAGGGAATGAAAAAGAAAACAGGAAGAGTGATGATGATGATGCGAAAAGCGATAAAAAAGAAGTTGTAAAGAAAACAGAGTGAAAAAAAAAACAAAGACGAAAACATAACAAACGATAAAGAAAAACGTCCGTGACTAAGGAAAGAAGTTAAAGAAAGAAGGAGACAAATGAGATAAAAACAAAAGCGAAAACATTTGAACATGAACGCAAGAAACATGACA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8011#0 GTGGCAAGCGCCCCTGTAGTAAGCAGATACTGGTAGTGTGTACTAAAAAAACCTGTGGAA 60
consensus_8011#1 ------------------------------------------------------------
consensus_8011#0 AAAAATACTACTAAAAACAAAAATGTCACCGAACGCGTCAGAGCTCGGTCGTAAACGTTG 120
consensus_8011#1 ------------------------------------------------------------
consensus_8011#0 TGAAACTGTAGATGAATTCTTGTTTTCTCTCCCATTCCCTCTGATTTCCCTTCCCTTTCT 180
consensus_8011#1 ------------------------------------------------------------
consensus_8011#0 AACTAAAGCGTGAGCTATTTTCCAATCCTAAAACAAAAAACAAAACAAAAGAATATCTTC 240
consensus_8011#1 ------------------------------------------------------------
consensus_8011#0 CATCCAGAAAACCTTAAAGAAACAAAATGTGTGAAATGAGACAAAAATGAGACAAAAAAA 300
consensus_8011#1 ------------------------------------------------------------
consensus_8011#0 GGTTCGTTTGCGTATTTTCAACTAGGCAAATGAATGTTGTGCAATCAAAGAGAAAAAAAA 360
consensus_8011#1 ------------------------------------------------------------
consensus_8011#0 CGAAAAGAGTGGAAGTAACTAAAACAAAGCAAAAAAAGAAGAAAACATTACGGAAATCGT 420
consensus_8011#1 ------------------------------------------------------------
consensus_8011#0 GACATTGTAGAGTAGCTTTTAAGAGCAGCAAACTAGAGTTGAAGAACAACAAAAAACGCA 480
consensus_8011#1 -----------------------------------------------CCGAAAAAACGCA 13
**********
consensus_8011#0 CCTTCATTAGGTGCAAAAGTGCTTCATGGATGGATGAATGTGTTTGTTTGAAAAAGATTT 540
consensus_8011#1 CCTTCATTAGGTGCAAAAGTGCTTCATGGATGGATGAATGTGTTTGTTTGAAACAGATTT 73
***************************************************** ******
consensus_8011#0 GTTTTACGCGTTAAGTTCATCTTTAGCGACTAGAGACGACTACTCCCATGCCTTCCGTAT 600
consensus_8011#1 GTTTTACGTGTTAAGTTCATCTTTAGCGACTAGAGACGACTACTCCCATGCCTTCCGTAT 133
******** ***************************************************
consensus_8011#0 CCGTTACTTTCCTCTAAAACACGTACACACACGCATACAAAAATCATTCGGTGAAGTATA 660
consensus_8011#1 CCGTTACTTTCCTCTAAAACACGTACACACACGCATACAAAAATCATTCGGTAAAGTATA 193
**************************************************** *******
consensus_8011#0 GAAAGTGGAGCTACTCGCATGATAATGCAAAATGTGGAAAAGAAACCCTGCTCCTCCTCC 720
consensus_8011#1 GAAAGTGGAGCTACTCGCATGATAATGCAAAATGTGGAAAAGAAACCCTGCTCCTCCTCC 253
************************************************************
consensus_8011#0 TCCT----------------TCCCCAGACACAAGTAGTGTTTAAGGCTAATTGGTGACGC 764
consensus_8011#1 TCCTCCTTCCCCATCCTCCTTCCCCAGACACAAGTAGTGTTTAAGGCTAATTGGTGACGC 313
**** ****************************************
consensus_8011#0 GCCTACTGTGAGTGTGTCGTCTTGCATGCATGTAAAACTTTGTAAATAAATTGTTTAGTG 824
consensus_8011#1 GCCTACTGTGAGTGTGTCGTCTTGCATGCATGTAAAACTTTGTAAATATATTGTTTAGTG 373
************************************************ ***********
consensus_8011#0 ATAAAAAGAAGGGAATGAAAAAGAAAACAGGAAGAGTGATGATGATGAAGCGAAAAGCGA 884
consensus_8011#1 ATAAAAAGAAGGGAATGAAAAAGAAAACAGGAAGAGTGATGATGATGATGCGAAAAGCGA 433
************************************************ ***********
consensus_8011#0 AAAGAAAGAAGTTGTAAAGAAAACAGAGTGAAAAAAAA--CAAAGACGAAAACATAACAA 942
consensus_8011#1 TAAAAAAGAAGTTGTAAAGAAAACAGAGTGAAAAAAAAAACAAAGACGAAAACATAACAA 493
** ********************************** ********************
consensus_8011#0 ACGATAAAGAAAAACGTCCGTGACTAAGGAAAGCAGTTAAAGAATGAAGGAGACAAATGA 1002
consensus_8011#1 ACGATAAAGAAAAACGTCCGTGACTAAGGAAAGAAGTTAAAGAAAGAAGGAGACAAATGA 553
********************************* ********** ***************
consensus_8011#0 GATAAAAACAAAAGCGAAAACATTTGAACATGAGCGCAAGAAACATGACATTTTTTAAAA 1062
consensus_8011#1 GATAAAAACAAAAGCGAAAACATTTGAACATGAACGCAAGAAACATGACA---------- 603
********************************* ****************
consensus_8011#0 CATTGAACTGGAACACGGAGATGATCACACATCTCCTTTCCGCTCCCCCCCCCCTCCCCT 1122
consensus_8011#1 ------------------------------------------------------------
consensus_8011#0 CTTTTTCGGCGGGCCCTTTGAAGGAAAAGTCATGGTGGGTAGAGGAGGGGTCGGTGAAAC 1182
consensus_8011#1 ------------------------------------------------------------
consensus_8011#0 CCGTTTTTTTTTTGTAAATATACCAAAAACTAATTATAACGCAATATTTGACGTGAGACG 1242
consensus_8011#1 ------------------------------------------------------------
consensus_8011#0 AAACACATTAAAGCAGTGTGAAAGCTGTTGTGAATTTAAAACGTGGAAGAGAACTGCAGA 1302
consensus_8011#1 ------------------------------------------------------------
consensus_8011#0 GTAAACAGAAGAACACATTAGTAAGTGAGAATTGTAGTAGCGAAGGAAGTGAAAAAATGA 1362
consensus_8011#1 ------------------------------------------------------------
consensus_8011#0 AAAAGGAAAGCAAAGAGAAAGAGAGAGAGAGAGGGAGAAAAAACACCGGATCGAAACTCG 1422
consensus_8011#1 ------------------------------------------------------------
consensus_8011#0 AACGTAGTAGTTGTAGAAAGAATTAAAGAAAGTTTAGCACAGAACAAGTAAAACTGTGCG 1482
consensus_8011#1 ------------------------------------------------------------
consensus_8011#0 TCA 1485
consensus_8011#1 ---
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||