These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8011#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1485 fasta sequence [GTGGCAAGCGCCCCTGTAGTAAGCAGATACTGGTAGTGTGTACTAAAAAAACCTGTGGAAAAAAATACTACTAAAAACAAAAATGTCACCGAACGCGTCAGAGCTCGGTCGTAAACGTTGTGAAACTGTAGATGAATTCTTGTTTTCTCTCCCATTCCCTCTGATTTCCCTTCCCTTTCTAACTAAAGCGTGAGCTATTTTCCAATCCTAAAACAAAAAACAAAACAAAAGAATATCTTCCATCCAGAAAACCTTAAAGAAACAAAATGTGTGAAATGAGACAAAAATGAGAC-AAAAAAAGGTTCGTTTGCGTATTTTCAACTAGGCAAATGAATGTTGTGCAATCAAAGAGAAAAAAAACGAAAAGAGTGGAAGTAACTAAAACAAAGCAAAAAAAGAAGA--AAACATTACGGAAATCGTGACATTGTAGAGTAGCTTTTAAGAGCAGCAAACTAGAGTTGAAGAACAACAAAAAACGCACCTTCATTAGGTGCAAAAGTGCTTCATGGATGGATGAATGTGTTTGTTTGAAAAAGATTTGTTTTACGCGTTAAGTTCATCTTTAGCGACTAGAGACGACTACTCCCATGCCTTCCGTATCCGTTACTTTCCTCTAAAACACGTACACACACGCATACAAAAATCA-TTCGGTGAAGTATAGAAAGTGGAGCTACTCGCATGATAATGCAAAATGTGGAAA--AGAAACCCTGCTC---CTCCTCC----TCCTT-CCCCA-GACACAAGTAGTGTTTAAGGCTAATTGGTGACGCGCCTACTGTGAGTGTGTCGTCTTGCATGCATGTAAAACTTTGTAAATAAATTGTTTAGTGATAAAAAGAAGGGAATGAAAAAGAAAACAGGAAGAGTGATGATGATGAAGCGAAAAGCGAAAAGAAAGAAGTTGTAAAGAAAACAGAGTGAAAAAAAACAAAGACGAAAACATAACAAACGATAAAGAAAAACGTCCGTGACTAAGGAAAGCAGTTAAAGAATGAAGGAGACAAATGAGATAAAAACAAAAGCGAAAACATTTGAACATGAGCGCAAGAAACATGACATTTTTTAAAACATTGAACTGGAACACGGAGATGATCACACATCTCCTTTCCGCT---CCCCCCCCCCTCCCCTCTTTTTCG-GCGGGCCCTTTGAAGGAAAAGTCATGGTGGGTAGAGGAGGGGTCGGTGAAACCCGTTTTTTTTTTGTAAATATACCAAAAACTAATTATAACGCAATATTTGACGTGAGACGAAACACATTAAAGCAGTGTGAAAGCTGTTGTGAATTTAAAACGTGGAAGAGAACTGCAGAGTAAACAGAAGAACACATTAGTAAGTGAGAATTGTAGTAGCGAAGGAAGTGAAAAAATGAAAAAGGAAAGCAAAGAGAAAGAGAGAGAGAGAGGGAGAAAAAACACCGGATCGAAACTCGAACGTAGTAGTTGTAGAAAGAATTAAAGAAAGTTTAGCACAGAACAAGTAAAACTGTGCGTCA] [+] EMBL BX623206 [GTGGCAAGCGCCCCTGTAGTAAGCAGATACTGGTAGTGTGTACTAAAAAAACCTGTGGAAAAAAATACTACTAAAAACAAAAATGTCACCGAACGCGTCAGAGCTCGGTCGTAAACGTTGTGAAACTGTAGATGAATTCTTGTTTTCTCTCCCATTCCCTCTGATTTCCCTTCCCTTTCTAACTAAAGCGTGAGCTATTTTCCAATCCTAAAACAAAAAACAAAACAAAAGAATATCTTCCATCCAGAAAACCTTAAAGAAACAAAATGTGTGAAATGAGACAAAAATGAGAC AAAAAAAGGTTCGTTTGCGTATTTTCAACTAGGCAAATGAATGTTGTGCAATCAAAGAGAAAAAAAACGAAAAGAGTGGAAGTAACTAAAACAAAGCGAAAAAAGAAGAAGAAACATTACGGAAATCGTGACATTGTAGAGTAGCTTGTAAGAGCAGCAAACTAGAGTTGAACAACAACAAAAAACGCACCTTCATTTGGTGCAAAAGTGCTTCATGGATGGATGAATGTGTTTGTTTGAAAAAGATTTGTTTTACGCGTTAAGTTCATCTTTAGCGACTAGAGACGACTACTCCCATGCCTTCCGTATCCGTTACTTTCCTCTAAAACACGTACACACACGCATACAAAAATCATTTCGGTGAAGTATAGAAAGTGGAGCTACTCGC ] [+] EMBL BX612789 [ GATACAAAAATGAGACAAAAAAAAGGTTCGTTTGCGTATTTTCAACTAGGCAAATGAATGTTGTGCAATCAAAGAG AAAAAAACGAAAAGAGTGGAAGTAACTAAAACAAAGCAAAAAAAGAAGA AAACATTACGGAAATCGTGACATTGTAGAGTAGCTTTTAAGAGCAGCAAACTAGAGTTGAAGAACAACAAAAAACGCACCTTCATTAGGTGCAAAAGTGCTTCATGGATGGATGAATGTGTTTGTTTGAAAAAGATTTGTTTTACGCGTTAAGTTCATCTTTAGCGACTAGAGACGACTACTTCCATGCCTTCCGTATCCGTTACTTTCCTCTAAAACACGTACACACACGCATACAAAAATCA TTCGGTAAAGTATAGAAAGTGGAGCTACTCGCATGATAATGCAAAATGTGGAAA AGAAACCCTGCTC CTCCTCC TCCTT CCCCA GACACAAGTAGTGTTTAAGGCTAATTGGTGACGCGCCTACTGTGAGTGTGTCGTCTTGCATGCATGTAAAACTTTGTAAATAAATT ] [+] EMBL BX609630 [ GCAAATGAATGTTGTGCAATCAAAGAGAAAAAAAACGAAAAGAGTGGAAGTAACTAAAACAAAGCAAAAAAAGAAGA AAACATTACGGAAATCGTGACATTGTAGAGTAGCTTTTAAGAGCAGCAAACTAGAGTTGAAGAACAACAAAAAACGCACCTTCATTAGGTGCAAAAGTGCTTCATGGATGGATGAATGTGTTTGTTTGAAAAAGATTTGTTTTACGCGTTAAGTTCATCTTTAGCGACTAGAGACGACTACTCCCATGCCTTCCGTATCCGTTACTTTCCTCTAAAACACGTACACACACGCATACAAAAATCA TTCGGTAAAGTATAGAAAGTGGAGCTACTCGCATGATAATGCAAAATGTGGAAA AGAAACCCTGCTC CTCCTCC TCCTT CCCCA GACACAAGTAGTGTTTAAGGCTAATTGGTGACGCGCCTACTGTGAGTGTGTCGTCTTGCATGCATGTAAAACTTTGTAAATAAATTGTTTAGTGATAAAAAGAAGGGAATGAAAAAGAAAACAGGAAGAGTGATGATGATGAAGCGAAAAGCGAAAAGAAAGAAGTTGTAAAGAAAACAGAGTGAAAAAGAACAAAGACGAAAACATAACAAACGATAAAGAAAAACGTCCGTGACTAAGGAAAGCAGTT ] [+] EMBL BM584457 [ ccgCGGTGAAGTATAGAAAGTGGAGCTACTCGCATGATAATGCAAAATGTGGAAAATAAAAACCCTGCTCCTACTCCTCCTTCATCCTT CCCCA GACACAAGTAGTGTTTAAGGCTAATTGGTGACGCGCCTACTGTGAGTGTGTCGTCTTGCATGCATGTAAAACTTTGTAAATATATTGTTTAGTGATAAAAAGAAGGGAATGAAAAAGAAAACAGGAAGAGTGATGATGATGAGGCGAAAAGCGATAAGAAAGAAGTTGTAAAGAAAACAGAGTGAAAAAAAACAAAGACGAAAATATAACAAACGATAAAGAAAAACGTCCGTGACTAAGGAAAGAAGTTAAAGAATGAAGGAGACAAATGAGATAAAAACAAAAGCGAAAACATTTGAACATGAGCGCAAGAAACATGACATTTTTTAAAACATTGAACTGGAACACGGAGATGATCACACATCTCCTTTCCGCTTCCCCCCCCCCCCTCCCCTCTTTTTCG ] [+] EMBL BX619189 [ nCC TCCTTGCCCCAGGACACAAGTAGTGTTTAAGGCTAATTGGTGACGCGCCTACTGTGAGTGTGTCGTCTTGCATGCATGTAAAACTTTGTAAATAAATGGTTTAGTGATAAAAAGAAGGGAATGAAAAAGAAAACAGGAAGAGTGATGATGATGAAGCGAAAAGCGAAAA AAAGAAGTTGTAAAG ] [-] EMBL AGA281153 [ aA GACACAAGTAGTGTTTAAGGGTAATTGGTGACGCGCATACTGTGCCTGTGTCGTCTTGCATGCATGTAAAACTCTGTAACTAACTTGTTTAGTGATACAAAGAAGGGAATGAAAAAGAAAACAGGAGGAGTGATGATGGTGAAGCGAAAAGCGAAAGGAAAGAACTTGTAAAGAAAACAGAGTGAAAAAAAA ] [+] EMBL BX612407 [ AAACAGAGTGAAAAAAAACAAAGACGAAAACATAACAAACGATAAAGAAAAACGTCCGTGACTAAGGAAAGCAGTTAAAGAAAGAAGGAGACAAATGAGATAAAAACAAAAGCGAAAACATTTGAACATGAGCGCAAGAAACATGACATTTTTTAAAACATTGAACTGGTACACGGAGATGATCACACATCTCCTTTCCGCT CCGCCCCCCCTCCCCTC TTTTCGCGCGGGCCCTTTGAAGGAAAAGTCATGGTGGGTAGAGGAGGGGTCGGTGAAACCCGTTTTTTTTTTGTAAATATACCAAAAACTAATTATAACGCAATATTTGACGTGAGACGAAACACATTAAAGCAGTGTGAAAGCTGTTGTGAATTTAAAACGTGGAAGAGAACTGCAGAGTAAACAGAAGAACACATTAGTAAGTGAGAATTGTAGTAGCGAAGGAAGTGAAAAAATGAAAAAGGAAAGCAAAGAGAAAGAGAGAGAGAGAGGGAGAAAAAACACCGGATCGAAACTCGAACGTAGTAGTTGTAGAAAGAATTAAAGAAAGTTTAGCACAGAACAAGTAAAACTGTGCGTCA] consensusID : consensus_8011#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 603 fasta sequence [CCGAAAAAACGCACCTTCATTAGGTGCAAAAGTGCTTCATGGATGGATGAATGTGTTTGTTTGAAACAGATTTGTTTTACGTGTTAAGTTCATCTTTAGCGACTAGAGACGACTACTCCCATGCCTTCCGTATCCGTTACTTTCCTCTAAAACACGTACACACACGCATACAAAAATCATTCGGTAAAGTATAGAAAGTGGAGCTACTCGCATGATAATGCAAAATGTGGAAAAGAAACCCTGCTCCTCCTCCTCCTCCTTCCCCATCCTCCTTCCCCAGACACAAGTAGTGTTTAAGGCTAATTGGTGACGCGCCTACTGTGAGTGTGTCGTCTTGCATGCATGTAAAACTTTGTAAATATATTGTTTAGTGATAAAAAGAAGGGAATGAAAAAGAAAACAGGAAGAGTGATGATGATGATGCGAAAAGCGATAAAAAAGAAGTTGTAAAGAAAACAGAGTGAAAAAAAAAACAAAGACGAAAACATAACAAACGATAAAGAAAAACGTCCGTGACTAAGGAAAGAAGTTAAAGAAAGAAGGAGACAAATGAGATAAAAACAAAAGCGAAAACATTTGAACATGAACGCAAGAAACATGACA] [+] EMBL BM626921 [CCGAAAAAACGCACCTTCATTAGGTGCAAAAGTGCTTCATGGATGGATGAATGTGTTTGTTTGAAACAGATTTGTTTTACGTGTTAAGTTCATCTTTAGCGACTAGAGACGACTACTCCCATGCCTTCCGTATCCGTTACTTTCCTCTAAAACACGTACACACACGCATACAAAAATCATTCGGTAAAGTATAGAAAGTGGAGCTACTCGCATGATAATGCAAAATGTGGAAAAGAAACCCTGCTCCTCCTCCTCCTCCTTCCCCATCCTCCTTCCCCAGACACAAGTAGTGTTTAAGGCTAATTGGTGACGCGCCTACTGTGAGTGTGTCGTCTTGCATGCATGTAAAACTTTGTAAATATATTGTTTAGTGATAAAAAGAAGGGAATGAAAAAGAAAACAGGAAGAGTGATGATGATGATGCGAAAAGCGATAAAAAAGAAGTTGTAAAGAAAACAGAGTGAAAAAAAAAACAAAGACGAAAACATAACAAACGATAAAGAAAAACGTCCGTGACTAAGGAAAGAAGTTAAAGAAAGAAGGAGACAAATGAGATAAAAACAAAAGCGAAAACATTTGAACATGAACGCAAGAAACATGACA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8011#0 GTGGCAAGCGCCCCTGTAGTAAGCAGATACTGGTAGTGTGTACTAAAAAAACCTGTGGAA 60 consensus_8011#1 ------------------------------------------------------------ consensus_8011#0 AAAAATACTACTAAAAACAAAAATGTCACCGAACGCGTCAGAGCTCGGTCGTAAACGTTG 120 consensus_8011#1 ------------------------------------------------------------ consensus_8011#0 TGAAACTGTAGATGAATTCTTGTTTTCTCTCCCATTCCCTCTGATTTCCCTTCCCTTTCT 180 consensus_8011#1 ------------------------------------------------------------ consensus_8011#0 AACTAAAGCGTGAGCTATTTTCCAATCCTAAAACAAAAAACAAAACAAAAGAATATCTTC 240 consensus_8011#1 ------------------------------------------------------------ consensus_8011#0 CATCCAGAAAACCTTAAAGAAACAAAATGTGTGAAATGAGACAAAAATGAGACAAAAAAA 300 consensus_8011#1 ------------------------------------------------------------ consensus_8011#0 GGTTCGTTTGCGTATTTTCAACTAGGCAAATGAATGTTGTGCAATCAAAGAGAAAAAAAA 360 consensus_8011#1 ------------------------------------------------------------ consensus_8011#0 CGAAAAGAGTGGAAGTAACTAAAACAAAGCAAAAAAAGAAGAAAACATTACGGAAATCGT 420 consensus_8011#1 ------------------------------------------------------------ consensus_8011#0 GACATTGTAGAGTAGCTTTTAAGAGCAGCAAACTAGAGTTGAAGAACAACAAAAAACGCA 480 consensus_8011#1 -----------------------------------------------CCGAAAAAACGCA 13 ********** consensus_8011#0 CCTTCATTAGGTGCAAAAGTGCTTCATGGATGGATGAATGTGTTTGTTTGAAAAAGATTT 540 consensus_8011#1 CCTTCATTAGGTGCAAAAGTGCTTCATGGATGGATGAATGTGTTTGTTTGAAACAGATTT 73 ***************************************************** ****** consensus_8011#0 GTTTTACGCGTTAAGTTCATCTTTAGCGACTAGAGACGACTACTCCCATGCCTTCCGTAT 600 consensus_8011#1 GTTTTACGTGTTAAGTTCATCTTTAGCGACTAGAGACGACTACTCCCATGCCTTCCGTAT 133 ******** *************************************************** consensus_8011#0 CCGTTACTTTCCTCTAAAACACGTACACACACGCATACAAAAATCATTCGGTGAAGTATA 660 consensus_8011#1 CCGTTACTTTCCTCTAAAACACGTACACACACGCATACAAAAATCATTCGGTAAAGTATA 193 **************************************************** ******* consensus_8011#0 GAAAGTGGAGCTACTCGCATGATAATGCAAAATGTGGAAAAGAAACCCTGCTCCTCCTCC 720 consensus_8011#1 GAAAGTGGAGCTACTCGCATGATAATGCAAAATGTGGAAAAGAAACCCTGCTCCTCCTCC 253 ************************************************************ consensus_8011#0 TCCT----------------TCCCCAGACACAAGTAGTGTTTAAGGCTAATTGGTGACGC 764 consensus_8011#1 TCCTCCTTCCCCATCCTCCTTCCCCAGACACAAGTAGTGTTTAAGGCTAATTGGTGACGC 313 **** **************************************** consensus_8011#0 GCCTACTGTGAGTGTGTCGTCTTGCATGCATGTAAAACTTTGTAAATAAATTGTTTAGTG 824 consensus_8011#1 GCCTACTGTGAGTGTGTCGTCTTGCATGCATGTAAAACTTTGTAAATATATTGTTTAGTG 373 ************************************************ *********** consensus_8011#0 ATAAAAAGAAGGGAATGAAAAAGAAAACAGGAAGAGTGATGATGATGAAGCGAAAAGCGA 884 consensus_8011#1 ATAAAAAGAAGGGAATGAAAAAGAAAACAGGAAGAGTGATGATGATGATGCGAAAAGCGA 433 ************************************************ *********** consensus_8011#0 AAAGAAAGAAGTTGTAAAGAAAACAGAGTGAAAAAAAA--CAAAGACGAAAACATAACAA 942 consensus_8011#1 TAAAAAAGAAGTTGTAAAGAAAACAGAGTGAAAAAAAAAACAAAGACGAAAACATAACAA 493 ** ********************************** ******************** consensus_8011#0 ACGATAAAGAAAAACGTCCGTGACTAAGGAAAGCAGTTAAAGAATGAAGGAGACAAATGA 1002 consensus_8011#1 ACGATAAAGAAAAACGTCCGTGACTAAGGAAAGAAGTTAAAGAAAGAAGGAGACAAATGA 553 ********************************* ********** *************** consensus_8011#0 GATAAAAACAAAAGCGAAAACATTTGAACATGAGCGCAAGAAACATGACATTTTTTAAAA 1062 consensus_8011#1 GATAAAAACAAAAGCGAAAACATTTGAACATGAACGCAAGAAACATGACA---------- 603 ********************************* **************** consensus_8011#0 CATTGAACTGGAACACGGAGATGATCACACATCTCCTTTCCGCTCCCCCCCCCCTCCCCT 1122 consensus_8011#1 ------------------------------------------------------------ consensus_8011#0 CTTTTTCGGCGGGCCCTTTGAAGGAAAAGTCATGGTGGGTAGAGGAGGGGTCGGTGAAAC 1182 consensus_8011#1 ------------------------------------------------------------ consensus_8011#0 CCGTTTTTTTTTTGTAAATATACCAAAAACTAATTATAACGCAATATTTGACGTGAGACG 1242 consensus_8011#1 ------------------------------------------------------------ consensus_8011#0 AAACACATTAAAGCAGTGTGAAAGCTGTTGTGAATTTAAAACGTGGAAGAGAACTGCAGA 1302 consensus_8011#1 ------------------------------------------------------------ consensus_8011#0 GTAAACAGAAGAACACATTAGTAAGTGAGAATTGTAGTAGCGAAGGAAGTGAAAAAATGA 1362 consensus_8011#1 ------------------------------------------------------------ consensus_8011#0 AAAAGGAAAGCAAAGAGAAAGAGAGAGAGAGAGGGAGAAAAAACACCGGATCGAAACTCG 1422 consensus_8011#1 ------------------------------------------------------------ consensus_8011#0 AACGTAGTAGTTGTAGAAAGAATTAAAGAAAGTTTAGCACAGAACAAGTAAAACTGTGCG 1482 consensus_8011#1 ------------------------------------------------------------ consensus_8011#0 TCA 1485 consensus_8011#1 --- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||