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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8022#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 843 fasta sequence
[CCCACGCGTCCGCTCGCTGAAAACCACCGCCAAGAAGGACGGCAACCACTACATCCTAAACGGCACGAAGATGTGGATCTCCAACTCCGACCTGTCGGGTGTGTTCCTGATCATGGCGAACGCGAACCCTTCGGCCGGCTACCGTGGCATCACGACGTTCATCGTGGAGCGCGAGTACGAAGGTTTCACCGTGGGCAAGAAGGAAAGCAAGCTGGGCATCTGTGCGTCCGGTACCTGCACGCTGCACATGGACAATGTGCGCGTGCCGGAGGAGAACATTCTCGGCGAGTTCGGCAAGGGGTACCAGTACGCGGCCGGCTTCCTGAACGAGGGCCGCATCGGCATCGGGGCGCAGATGATTGGGCTGGCCCAGGGCTGCCTGGACGCGACCATCCCGTACCTGCTGGAGCGCAAACAGTTCGGCTCGGATCTGTACTCGTTCCAGAGCATGCAGCATCAGATCGCGACGATCGCGACCGAGATCGAGGCGGCTCGGCTGCTGACGTACAATGCGGCCAGGTTGCAGGAGGCCGGCGCACCCTTCCTGAAGCAGGCCGCCATGGCCAAGTATTACGCGTCCGAGGTGGCCCAGCGCACGACGGTGAAGTGTATCGATTGGATGGGCGGCGTCGGCTTTACGAAGGATTTCCCGCAGGAGAAGTTCTACCGCGATTGTAAGATCGGTGCGATCTACGAGGGCACGACCAACATGCAGCTCAGCACGATCGCGAAGGTCATGAAGAAGGAGTACCAATCGTAAGGTGGTTGATGGATGGAGGTGATGAAGGAGGAAGAGGAGGAGGAAGGGGAGGAGGAAAGCTCTCAAGAGAATGATTACGCAAC]
[+] EMBL BM616517 [CCCACGCGTCCGCTCGCTGAAAACCACCGCCAAGAAGGACGGCAACCACTACATCCTAAACGGCACGAAGATGTGGATCTCCAACTCCGACCTGTCGGGTGTGTTCCTGATCATGGCGAACGCGAACCCTTCGGCCGGCTACCGTGGCATCACGACGTTCATCGTGGAGCGCGAGTACGAAGGTTTCACCGTGGGCAAGAAGGAAAGCAAGCTGGGCATCTGTGCGTCCGGTACCTGCACGCTGCACATGGACAATGTGCGCGTGCCGGAGGAGAACATTCTCGGCGAGTTCGGCAAGGGGTACCAGTACGCGGCCGGCTTCCTGAACGAGGGCCGCATCGGCATCGGGGCGCAGATGATTGGGCTGGCCCAGGGCTGCCTGGACGCGACCATCCCGTACCTGCTGGAGCGCAAACAGTTCGGCTCGGATCTGTACTCGTTCCAGAGCATGCAGCATCAGATCGCGACGATCGCGACCGAGATCGAGGCGGCTCGGCTGCTGACGTACAATGCGGCCAGGTTGCAGGAGGCCGGCGCACCCTTCCTGAAGCAGGCCGCCATG ]
[+] EMBL BM647030 [ ccgGCAAGCTGGGCATCTGTGCGTCCGGTACCTGCACGCTGCACATGGACAATGTGCGCGTGCCGGAGGAGAACATTCTCGGCGAGTTCGGCAAGGGGTACCAGTACGCGGCCGGCTTCCTGAACGAGGGCCGCATCGGCATCGGGGCGCAGATGATTGGGCTGGCCCAGGGCTGCCTGGACGCGACCATCCCGTACCTGCTGGAGCGCAAACAGTTCGGCTCGGATCTGTACTCGTTCCAGAGCATGCAGCATCAGATCGCGACGATCGCGACCGAGATCGAGGCGGCTCGGCTGCTGACGTACAATGCGGCCAGGTTGCAGGAGGCCGGCGCACCCTTCCTGAAGCAGGCCGCCATGGCCAAGTATTACGCGTCCGAGGTGGCCCAGCGCACGACGGTGAAGTGTATCGATTGGATGGGCGGCGTCGGCTTTACGAAGGATTTCCCGCAGGAGAAGTTCTACCGCGATTGTAAGATCGGTGCGATCTACGAGGGCACGACCAACATGCAGCTCAGCACGATCGCGAAGGTCATGAAGAAGGAGTA ]
[+] EMBL BM604398 [ ccgGGCGGCTCGGCTGCTGACGTACAATGCGGCCAGGTTGCAGGAGGCCGGCGCACCCTTCCTGAAGCAGGCCGCCATGGCCAAGTATTACGCGTCCGAGGTGGCCCAGCGCACGACGGTGAAGTGTATCGATTGGATGGGCGGCGTCGGCTTTACGAAGGATTTCCCGCAGGAGAAGTTCTACCGCGATTGTAAGATCGGTGCGATCTACGAGGGCACGACCAACATGCAGCTCAGCACGATCGCGAAGGTCATGAAGAAGGAGTACCAATCGTAAGGTGGTTGATGGATGGAGGTGATGAAGGAGGAAGAGGAGGAGGAAGGGGAGGAGGAAAGCTCTCAAGAGAATGATTACGCAAC]
consensusID : consensus_8022#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 714 fasta sequence
[CCGTGTGCTCGTACGTGGCCGGTTGTGTTGACTCTCCGCAGTGCGCTCCCAGTGTGTGTGTGTGTGATCGATCTACTCTTCCACTGCTCTTCTACTCAGACCACAACCACTGCACCAAGATGCTGCAAAACGTTCTCCGCCAGGTGGTCCGCTCGGTGGGCTCGATCGGTACGCGATCGTTTGCCAGCAGCTCGTTCGGCACGGCCAAGAGTGCCACCTCGCCCCTCACCTACCTGAGCGAGGACGAGATGGTGATGAAGGAAACGGTCGCCAAGCTGGCCCAGGAACAGATTGCCCCGCTGGTGAAGAAGATGGACGAGGAGCACCAGTTCGATCCGTCCGTCGTGCGCGCCCTGTTCGACAACGGGCTGATGGGGATTGAGGTGAGCGACGAGTACGGGGGCAGTGCGTGCAACTTCATGACCACCATGCTGGTGGTGGAGGAACTGTCCAAGGTGTGCCCGGCGACGGCCGCCTTCGTCGACATCCACAACACGCTCGTCAACTCGCTCATGATCAAGCTCGGCACGGCGGAACAGAAGAGCAAGTACCTGCCCAAGCTCAGCCAGG-AGTACAGCGGTAGCTTCGCCCTGTCCGAACCGTC-GGCC-GGGTCGGATGCGTTCTCGCTGAAAACCACCGCCAAGAAGGACGGCAACCACTACATCCTAAACGGCACGAAGATGTGGATCTCCAACTCCGACCTGTCGGGTGTGT]
[+] EMBL BM576057 [CCGTGTGCTCGTACGTGGCCGGTTGTGTTGACTCTCCGCAGTGCGCTCCCAGTGTGTGTGTGTGTGATCGATCTACTCTTCCACTGCTCTTCTACTCAGACCACAACCACTGCA CAAGATGCTGCAAAACGTTCTCCGCCAGGTGGTCCGCTCGGTGGGCTCGATCGGTACGCGATCGTTTGCCAGCAGCTCGTTCGGCACGGCCAAGAGTGCCACCTCGCCCCTCACCTACCTGAGCGAGGACGAGATGGTGATGAAGGAAACGGTCGCCAAGCTGGCCCAGGAACAGATTGCCCCGCTGGTGAAGAAGATGGACGAGGAGCACCAGTTCGATCCGTCCGTCGTGCGCGCCCTGTTCGACAACGGGCTGATGGGGATTGAGGTGAGCGACGAGTACGGGGGCAGTGCGTGTAACTTCATGACCACCATGCTGGTGGTGGAGGAGCTGTCCAAGGTGTGCCCGGCGACGGCCGCCTTCGTCGACATCCACAACACGCTCGTCAACTCGCTCATGATCAAGCTCGGCACGGCGGAACAGAAGAGCAAGTACCTGCCCAAGCTTAGCCAGGAAGTACAGCGGTAGCTTCGCCCTGTCCGAACCGTCGGGCCGGGGTCGGATGCGTTCTCGCTGAAAACCACCGCCAAGAAGGACGG ]
[+] EMBL BM584876 [ ccgGCTCGTACGTGGCCGGTTGTGTTGACTCTCCGCAGTGCGCTCCCAGTGTGTGTGTGTGTAATCGATCTACTCTTCCACTGCTCTTCTACTCAGACCACAACCACTGCACCAAGATGCTGCAAAACGTTCTCCGCCAAGTGGTCCGCTCGGTGGGCTCGATCGGTACGCGATCGTTTGCCAGCAGCTCGTTCGGCACGGCCAAGAGTGCCACCTCGCCCCTCACCTACCTGAGCGAGGACGAGATGGTGATGAAGGAAACGGTCGCCAAGCTGGCCCAGGAACAGATTGCCCCGCTGGTGAAGAAGATGGACGAGGAGCACCAGTTCGATCCGTCCGTCGTGCGCGCCCTGTTCGACAACGGGCTGATGGGGATTGAGGTGAGCGACGAGTACGGGGGCAGTGCGTGCAACTTCATGACCACCATGCTGGTGGTGGAGGAACTGTCCAAGGTGTGCCCGGCGACGGCCGCCTTCGTCGACATCCACAACACGC ]
[+] EMBL BM597453 [ ccgACCTGGCCGGTTGTGTTGACTCTCCGCAGTGCGCTCCCAGTGTGTGTGTGTGTGATCGATCTACTCTTCCACTGCTCTTCTACTCAGACCACAAGCACTGCATCAAGATGCTGCAAAACGTTCTCCGCCAGGTGGTCCGCTCGGTGGGCTCGATCGGTACGCGATCGTTTGCCAGCAGCTCGTTCGGCACGGCCAAGAGTGCCACCTCGCCCCTCACCTACCTGAGCGAGGACGAGATGGTGATGAAGGAAACGGTCGCCAAGCTGGCCCAGGAACAGATTGCCCCGCTGGTGAAGAAGATGGACGAGGAGCACCAGTTCGATCCGTCCGTCGTGCGCGCCCTGTTCGACAACGGGCTGATGGGGATTGAGGTGAGCGACGAGTACGGGGGCAGTGCGTGCAACTTCATGACCACCATGCTGGTGGTGGAGGAACTGTCCAAGGTGTGCCCGGCGACGGCCGCCTTCGTCGACATCCACAACACGCTCGTCAACTCGCTCATGATCAAGCTCGGCACGGCGGAACAGAAGAGCAAGTACCTGCCCAAGCTCAGCCAGG AGTACAGCGGTAGCTTCGCCCTGTCCGAACCGTC GGCC GGGTCGGATGCGTTCTCGC ]
[+] EMBL BM648599 [ ccggtGATCTTCTCTTCCATTGCTCTTCATCTGAAAC CAAGCACTGCACCAAGATGCTGCAAAACGTTCTCCGCCAGGTGGTCCGCTCGGTGGGCTCGATCGGTACGCGATCGTTTGCCAGCAGCTCGTTCGGCACGGCCAAGAGTGCCACCTCGCCCCTCACCTACCTGAGCGAGGACGAGATGGTGATGAAGGAAACGGTCGCCAAGCTGGCCCAGGAACAGATTGCCCCGCTGGTGAAGAAGATGGACGAGGAGCACCAGTTCGATCCGTCCGTCGTGCGCGCCCTGTTCGACAACGGGCTGATGGGGATTGAGGTGAGCGACGAGTACGGGGGCAGTGCGTGCAACTTCATGACCACCATGCTGGTGGTGGAGGAACTGTCCAAGGTGTGCCCGGCGACGGCCGCCTTCGTCGACATCCACAACACGCTCGTCAACTCGCTCATGATCAAGCTCGGCACGGCGGAACAGAAGAGCAAGTACCTGCCCAAGCTCAGCCAGG AGTACAGCGGTAGCTTCGCCCTGTCCGAACCGTC GGCC GGGTCGGATGCGTTCTCGCTGAAAACCACCGCCAAGAAGGACGGCAACCACTACATCCTAAACGGCACGAAGATGTGGATCTCCAACTCCGACCTGTCGGGTGTGT]
consensusID : consensus_8022#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 447 fasta sequence
[CCGCCCACGCGTCCGCCCACGCGTCCGGTACGTGGCCGGTTGTGTTGACTCTCCGCAGTGCGCTCCCAGTGTGTGTGTGTGTGATCGAGGCGGCTCGGCTGCTGACGTACAATGCGGCCAGGTTGCAGGAGGCCGGCGCACCCTTCCTGAAGCAGGCCGCCATGGCCAAGTATTACGCGTCCGAGGTGGCCCAGCGCACGACGGTGAAGTGTATCGATTGGATGGGCGGCGTCGGCTTTACGAAGGATTTCCCGCAGGAGAAGTTCTACCGCGATTGTAAGATCGGTGCGATCTACGAGGGCACGACCAACATGCAGCTCAGCACGATCGCGAAGGTCATGAAGAAGGAGTACCAATCGTAAGGTGGTTGATGGATGGAGGTGATGAAGGAGGAAGAGGAGGAGGAAGGGGAGGAGAAAAGCTCTCAAGAGAATGATTACGCAACTA]
[+] EMBL BM636275 [CCGCCCACGCGTCCGCCCACGCGTCCGGTACGTGGCCGGTTGTGTTGACTCTCCGCAGTGCGCTCCCAGTGTGTGTGTGTGTGATCGAGGCGGCTCGGCTGCTGACGTACAATGCGGCCAGGTTGCAGGAGGCCGGCGCACCCTTCCTGAAGCAGGCCGCCATGGCCAAGTATTACGCGTCCGAGGTGGCCCAGCGCACGACGGTGAAGTGTATCGATTGGATGGGCGGCGTCGGCTTTACGAAGGATTTCCCGCAGGAGAAGTTCTACCGCGATTGTAAGATCGGTGCGATCTACGAGGGCACGACCAACATGCAGCTCAGCACGATCGCGAAGGTCATGAAGAAGGAGTACCAATCGTAAGGTGGTTGATGGATGGAGGTGATGAAGGAGGAAGAGGAGGAGGAAGGGGAGGAGAAAAGCTCTCAAGAGAATGATTACGCAACTA]
[+] EMBL BX604819 [ CGGTGCGATCTACGAGGGCACGACCAACATGCAGCTCAGCACGATCGCGAAGGTCATGAAGAAGGAGTACCAATCGTAAGGTGG AGATGGTAGGAGGTGATGAAGGAGGAAGAGG ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8022#0 CCCACGCGTCCGCTCGCTGAAAACCACCGCCAAGAAGGACGGCAACCACTACATCCTAAA 60
consensus_8022#2 ------------------------------------------------------------
consensus_8022#1 ------------------------------------------------------------
consensus_8022#0 CGGCACGAAGATGTGGATCTCCAACTCCGACCTGTCGGGTGTGTTCCTGATCATGGCGAA 120
consensus_8022#2 ------------------------------------------------------------
consensus_8022#1 ------------------------------------------------------------
consensus_8022#0 CGCGAACCCTTCGGCCGGCTACCGTGGCATCACGACGTTCATCGTGGAGCGCGAGTACGA 180
consensus_8022#2 ------------------------------------------------------------
consensus_8022#1 -------------------CCGTGTGCTCGTACGTGGCCGGTTGTGTTGACTCTCCGCAG 41
consensus_8022#0 AGGTTTCACCGTGGGCAAGAAGGAAAGCAAGCTGGGCATCTGTGCGTCCGGTACCTGCAC 240
consensus_8022#2 ------------------------------------------------------------
consensus_8022#1 TGCGCTCCCAGTGTGTGTGTGTGTGATCGATCTACTCTTCCACTGCTCTTCTACTCAGAC 101
consensus_8022#0 -------GCTGCACATGGACAATGTG---CGCGTGCCGGAGGAGAACATTCTCGGCGAGT 290
consensus_8022#2 ------------------------------------------------------------
consensus_8022#1 CACAACCACTGCACCAAGATGCTGCAAAACGTTCTCCGCCAGGTGGTCCGCTCGGTGGGC 161
consensus_8022#0 TCGGCAAGGG-GTACCAGTACGCGGCCGGCTTCCTGAACGAGGGCCGCATCGGCA--TCG 347
consensus_8022#2 ------------------------------------------------------------
consensus_8022#1 TCGATCGGTACGCGATCGTTTGCCAGCAGCTCGTTCGGCACGGCCAAGAGTGCCACCTCG 221
consensus_8022#0 GGGCGCAGATGATTGGGCTGGCCCAGGGCTGCCTGGACGCGACCATCCCGTACCTGCTGG 407
consensus_8022#2 -----------------------------------------------CCGCCCACGCGTC 13
consensus_8022#1 CCCCTCACCTACCTGAGCGAGGACGAGATGGTGATGAAGGAAACGGTCG--CCAAGCTGG 279
* * **
consensus_8022#0 AGCGCAAACAGTTCGGCTCGGATCTGTACTCGTTCCAGAGCATGCAGCATCAGATCGCGA 467
consensus_8022#2 CGCCCACGC-GTCCGGTACGTGGCCGGTTGTGTT---GACTCTCCGCAGTGCGCTCCCAG 69
consensus_8022#1 CCCAGGAACAGATTGCCCCGCTGGTGAAGAAGAT---GGACGAGGAGCACCAGTTCGATC 336
* * * * ** * * * * * **
consensus_8022#0 CGATCGC-GACCGAGATCGAGGCGGC--TCGGCTGCTGACGTACAATGCGGCCAGGTTGC 524
consensus_8022#2 TGTGTGT-GTGTGTGATCGAGGCGGC--TCGGCTGCTGACGTACAATGCGGCCAGGTTGC 126
consensus_8022#1 CGTCCGTCGTGCGCGCCCTGTTCGACAACGGGCTGATGGGGATTGAGGTGAGCGACGAGT 396
* * * * * * ** * ***** ** * * * * * *
consensus_8022#0 AGGAGGCCGGCGCACCCTTCCTGAAGCAGGCCGCCATGGCCAAGTATTACGCGTCCGAGG 584
consensus_8022#2 AGGAGGCCGGCGCACCCTTCCTGAAGCAGGCCGCCATGGCCAAGTATTACGCGTCCGAGG 186
consensus_8022#1 ACGGGGGCAGTGCGTGCAACTTCATGACCACCATGCTGGTGGTGGAGGAACTGTCCAAGG 456
* * ** * * ** * * * * * ** *** * * * **** ***
consensus_8022#0 TG-GCCCAGCGCACGACGGTGAAGT--GTATCGATTGGATGGGCGGCGTCGGCTTTACGA 641
consensus_8022#2 TG-GCCCAGCGCACGACGGTGAAGT--GTATCGATTGGATGGGCGGCGTCGGCTTTACGA 243
consensus_8022#1 TGTGCCCGGCGACGGCCGCCTTCGTCGACATCCACAACACGCTCGTCAACTCGCTCATGA 516
** **** *** * ** ** *** * * * ** * * * * **
consensus_8022#0 AGGATTTCCCGCAGGAGAAGTTCTACCGCGATTGTAAGATCGGTGCGATCTACGAGGGCA 701
consensus_8022#2 AGGATTTCCCGCAGGAGAAGTTCTACCGCGATTGTAAGATCGGTGCGATCTACGAGGGCA 303
consensus_8022#1 TCAAGCTCGGCACGGCGGAACAGAAGAGCAAGTACCTGCCCAAGCTCAGCCAGGAGTACA 576
* ** ** * * * ** * * * * * * * *** **
consensus_8022#0 CGACCAACATGCAGCTCAGCACGATCGCGAAGGTCATGAAGAAGGAGTACCAATCGTAAG 761
consensus_8022#2 CGACCAACATGCAGCTCAGCACGATCGCGAAGGTCATGAAGAAGGAGTACCAATCGTAAG 363
consensus_8022#1 GCGGTAGCTTC--GCCCTGTCCGAAC-CGTCGGCCGGGTCGGATGCGTTCTCGCTGAAAA 633
* * * ** * * *** * ** ** * * * * * ** * * **
consensus_8022#0 GTGGTTGATGGATGGA-GGTGATGAAGGAGGAAGAGGAGG-AGGAAGGGGAGGAGGAAAG 819
consensus_8022#2 GTGGTTGATGGATGGA-GGTGATGAAGGAGGAAGAGGAGG-AGGAAGGGGAGGAGAAAAG 421
consensus_8022#1 CCACCGCCAAGAAGGACGGCAACCACTACATCCTAAACGGCACGAAGATGTGGATCTCCA 693
** *** ** * * * ** * **** * ***
consensus_8022#0 CTCTCAAGAGAATGATTACGCAAC-- 843
consensus_8022#2 CTCTCAAGAGAATGATTACGCAACTA 447
consensus_8022#1 ACTCCGACCTGTCGGGTGTGT----- 714
* * * * *
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||