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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8023#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1162 fasta sequence
[TACATAGATATTTTTTTGTATTAACTGGTGCGTTAATCCAAATAATGTTAACAATACGCACTGGCCCATGCTTACCTAGCTTACCTATACCATAGGAATACTACAAAATTGGGTTTTCTGATACCAGAGGTGAATACCGCGGTCCACCGCTGAAGGAAGCTTTCTTTTTCGGGTATATCACATACAGAGTCAACTGAATTCCAGCCAATATTCCACCAAGAAGATTTGGAATCTGTATAAATCGATCACCAATAAGTACGCCATAGGCCGTCCAAAGTAAGCACACGAAAAACGATGCCATAATGATCGGAAAAGGAAGACTGTCCGTATTCTGGGTACGGATGACATGCGCTAACATTGTAAGCGGTGATGCGAAAAACAAAACCGCCAAACAGCAGCAAAGCAGACCTATGACACGGATCGACTTCTCATCGTCCGTCTCGAATAAGGTGTACAGCGTGGCGCTCAGTATGATGCAGGATATGACCATCATTTGGCGTATCACCT-CCCGCTTGTTTACGCAGAATATGAAAAACACCACAGTGTAGGAGAAAAACAGTGCGGATCCGATAAAGTTGACCAGTATCAGAGTACTTTCCTCCGTCAGGACACCATACTTGAGCCACATGAAACAGGAAAGAAATCCGGATATGAAGGGGAAGGCTGATGTGTCTCCTGTTGATTTCTTCCGAATGTAACGATTACAAATCACAGTGCCAGTAAGAAACTGCAGAACCGTTGCAACCGTGGCCAGGCTGGCAAGGCTGCCTTTGGACATAATTCCGTCCATTTGTTGACGCGGTAACAACGCTTAATACCTCTCAGTTGCGGCTCACAATCGGACTTTTCTACACTCCATCGAAACAGCAGTACCGCCACGACACGCGAGCAATCATGCCCCGTGCTTTGTATACCCTTGGCTTTGATAAATTATAGAAAATGGACAATTTCCATTCGGTCGCATCCGCTACCGGAGCAATTTGTTTATAATCAGACGTGTTTTTGACAAATAACGGTACGTGTACACATCGGTTGCTAACTGCGCCCGGTTGGTCCATTTCCACCGCATTTGACAGTTGACGGCAGAACACTTGTTTGCACACGAAAAGTTTTACTCCTCCATCTTTTCCGACTGAGCCTTAAGCACTTATGAACACGAGCC]
[+] EMBL CNS09DL0 [TACATAGATATTTTTTTGTATTAACTGGTGCGTTAATCCAAATAATGTTAACAATACGCACTGGCCCATGCTTACCTAGCTTACCTATACCATAGGAATACTACAAAATTGGGTTTTCTGATACCAGAGGTGAATACCGCGGTCCACCACTGAAGGAAGCTTTCTTTTTCGGGTATATCACATACAGAGTCAACTGAATTCCTGCCAATATTCCACCGAGAAGATTCGGAATCTGTATAAATCGATCACCAATAAGTACGCCATAGGCCGTCCAAAGTAAGCACACGAAAAACGATGCCACAATGATCGGAAAAGGAAGACTATCCGTATTCTGGGTACGGATGACATGCGCTAACATTGTAAGCGGTGATGCGAAAAACAAAACCGCCAAACAGCAGCAAAGCAGACCTATGACACGGATCGACTTCTCATCGTCCGTCTCGAATAAGGTGTACAGCGTGGCGCTCAGTATGATGCAGGATATGACCATCATTTGGCGTATCACCT CCCGCTTGTTTACGCAGAATATGAAAAACACCACAGTGTAGGAGAAAAACAGTGCGGATCCGATAAAGTTGACCAGTATCAGAGTACTTTCCTCCGTCAGGACACCATACTTGAGCCACATGAAACAGGAAAGAAATCCGGATATGAAGGGGAAGGCTGATGTGTCTCCTGTTGATTTCTTCCGAATGTAACGATTACAAATCACAGTGCCAGTAAGAAACTGCAGAACCGTTGCAACCGTGGCCAGGCTGGCAAGGCTGCCTTTGGACATAATTCCGTCCATTTGTTGACGCTGTAACAACGCTTAATACCTCTCAGTTGCG ]
[-] EMBL BX615468 [ TTTTCTGATACCAGAGGTGAATACCGCGGTCCACCGCTGAAGGAAGCTTTCTTTTTCGGGTATATCACATACAGAGTCAACTGAATTCCAGCCAATATTCCACCAAGAAGATTTGGAATCTGTATAAATCGATCACCAATAAGTACGCCATAGGCCGTCCAAAGTAAGCACACGAAAAACGATGCCATAATGATCGGAAAAGGAAGACTGTCCGTATTCTGGGTACGGATGACATGCGCTAACATTGTAAGCGGTGATGCGAAAAACAAAACCGCCAAACAGCAGCAAAGCAGACCTATGACACGGATCGACTTCTCATCGTCCGTCTCGAATAAGGTGTACAGCGTGGCGCTCAGTATGATGCAGGATATGACCATCATTTGGCGTATCACCT CCCGCTTGTTTACGCAGAATATGAAAAACACCACAGTGTAGGAGAAAAACAGTGCGGATCCGATAAAGTTGACTAGTATCAGAGTACTTTCCTCCGTCAGGACACCATACTTGAGCCACATGAAACAGGAAAGAAATCCGGATATGAAGGGGAAGGCTGATGTGTCTCCTGTTGATTTCTTCCGAATGTAACGATTACAAATCACAGTGCCAGTAAGAAACTGCAGAACCGTTGCAACCGTGGCCAGGCTGGCAAGGCTGCCTTTGGACATAATTCCGTCCATTTGTTGACGCGGTAACAACGCTTAATACCTCTCAGTTGCGGCTCACAATCGGACTTTTCTACACTCCATCGAAACAGCAGTACCGCCACGACACGCGAGCAATCAT ]
[-] EMBL BX625931 [ GAGGTGAATACCGCGGTCCACCGCTGAAGGAAGCTTTCTTTTTCGGGTATATCACATACAGAGTCAACTGAATTCCAGCCAATATTCCACCAAGAAGATTTGGAATCTGTATAAATCGATCACCAATAAGTACGCCATAGGCCGTCCAAAGTAAGCACACGAAAAACGATGCCATAATGATCGGAAAAGGAAGACTGTCCGTATTCTGGGTACGGATGACATGCGCTAACATTGTAAGCGGTGATGCGAAAAACAAAACCGCCAAACAGCAGCAAAGCAGACCTATGACACGGATCGACTTCTCATCGTCCGTCTCGAATAAGGTGTACAGCGTGGCGCTCAGTATGATGCAGGATATGACCATCATTTGGCGTATCACCT CCCGCTTGTTTACGCAGAATATGAAAAACACCACAGTGTAGGAGAAAAACAGTGCGGATCCGATAAAGTTGACTAGTATCAGAGTACTTTCCTCCGTCAGGACACCATACTTGAGCCACATGAAACAGGAAAGAAATCCGAATATGAAGGGGAAGGCTGATGTGTCTCCTGTTGATTTCTTCCGAATGTAACGATTACAAATCACAGTGCCAGTAAGAAACTGCAGAACCGTTGCAACCGTGGCCAGGCTGGCAAGGCTGCCTTTGGACATAATTCCGTCCATTTGTTGACGCGGTAACAACGCTTAATACCTCTCAGTTGCGGCTCACAATCGGACTTTTCTACACTCCATCGAAACAGCAGTACCGCCACGACACGCGAGCAATCAT ]
[-] EMBL BX608269 [ CGGTCCACCGCTGAAGGAAGCTTTCTTTTTCGGGTATATCACATACAGAGTCAACTGAATTCCAGCCAATATTCCACCAAGAAGGTTTGGAATCTGTATAAATCGATCACCCATAAGTACGCCATAGGCCGTCCAAAGTAAGCACCCGAAAAACGATGCCATAATGTTCGGAAAAGGAAGACTGTCCGTATTCTGGGTACGGATG ]
[-] EMBL BM576014 [ GCACACGAAAAACGATGCCACAATGATCGGAAAAGGAAGACTATCCGTATTCTGGGTACGGATGACATGCGCTAACATTGTAAGCGGTGATGCGAAAAACAAAACCGCCAAACAGCAGCAAAGCAGACCTATGACACGGATCGACTTCTCATCGTCCGTCTCGAATAAGGTGTACAGCGTGGCGCTCAGTATGATGCAGGATATGACCATCATTTGGCGTATCACCT CCCGCTTGTTTACGCAGAATATGAAAAACACCACAGTGTAGGAGAAAAACAGTGCGGATCCGATAAAGTTGACCAGTATCAGAGTACTTTCCTCCGTCAGGACACCATACTTGAGCCACATGAAACAGGAAAGAAATCCGGATATGAAGGGGAAGGCTGATGTGTCTCCTGTTGATTTCTTCCGAATGTAACGATTACAAATCACAGTGCCAGTAAGAAACTGCAGAACCGTTGCAACCGTGGCCAGGCTGGCAAGGCTGCCTTTGGACATAATTCCGTCCATTTGTTGACGCGGTAACAACGCTTAATACCTCTCAGTTGCGGCTCACAGTCGGACTTTTCTACACTCCATCGAAACAGCAGTACCGCCTCGACACGCGACCAATCATGCCCCGTGCTTTGTATACCCTTGGCTTTGATAAATTATAGAAAATGGACAATTTCCATTCGGTCGCATCCGCTACCGG ]
[-] EMBL CNS09DKZ [ AATAAGGTGTACAGCGTGGCGCTCAGTATGATGCAGGATATGACCATCATTTGGCGTATCACCTCCCCGCTTGTTTACGCAGAATATGAAAAACACCACAGTGTAGGAGAAAAACAGTGCGGATCCGATAAAGTTGACCAGTATCAGAGTACTTTCCTCCGTCAGGACACCATACTTGAGCCACATGAAACAGGAAAGAAATCCGGATATGAAGGGGAAGGCTGATGTGTCTCCTGTTGATTTCTTCCGAATGTAACGATTACAAATCACAGTGCCAGTAAGAAACTGCAGAACCGTTGCAACCGTGGCCAGGCTGGCAAGGCTGCCTTTGGACATAATTCCGTCCATTTGTTGACGCGGTAACAACGCTTAATACCTCTCAGTTGCGGCTCACAGTCGGACTTTTCTACACTCCATCGAAACAGCAGTACCGCCTCGACACGCGACCAATCATGCCCCGTGCTTTGTATACCCTTGGCTTTGATTAATTATAGAAAATGGACAATTTCCATTCGGTCGCATCCGCTACGTGAGCAATTTGTTTATAATCAGACGTGTTTTTGACAAATAACGGTACGTGTACACATCGGTTGCTAACTGCGCCCGGTTGGTCCATTTCCACCGCATTTGACAGTTGACGGCAGAACACTTGTTTGCACACGAAAAGTTTTACTCCTCCATCTTTTCCGACTGAGCCTTAAGCACTTATGAACACGAGCC]
consensusID : consensus_8023#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 500 fasta sequence
[ATCACCTCCCGCTTGTTTACGCAGAATATGAAAAACACCACAGTGTAGGAGAAAAACAGTGCGGATCCGATAAAGTTGACCAGTATCAGAGTACTTTCCTCAGTCAGGACACCATACTTGAGCCACATGAAACAGGAAAGAAATCCGGATATGAAGGGGAAGGCTGATGTGTCTCCTGTTGATTTCTTCCGAATGTAACGATTACAAATCACAGTGCCAGTAAGAAACTGCAGAACCGTTGCAACCGTGGCCAGGCTGGCAAGGCTGCCTTTGGACATAATTCCGTCCATTTGTTGACGCGGTAACAACGCTTAATACCTCTCAGTTGCGGCTCACAATCGGACTTTTCTACACTCCATCGAAACAGCAGTACCGCCTCGACACGCGACCAATCATGCCCCGTGCTTTGTATACCCTTGGCTTCGACAAATTACGGAAAATGGACAATTTCCATTCGGTCGCATCCGCTACGTGAGCAATTTGTTCGGACGCGTGGGCGG]
[-] EMBL BM611629 [ATCACCTCCCGCTTGTTTACGCAGAATATGAAAAACACCACAGTGTAGGAGAAAAACAGTGCGGATCCGATAAAGTTGACCAGTATCAGAGTACTTTCCTCAGTCAGGACACCATACTTGAGCCACATGAAACAGGAAAGAAATCCGGATATGAAGGGGAAGGCTGATGTGTCTCCTGTTGATTTCTTCCGAATGTAACGATTACAAATCACAGTGCCAGTAAGAAACTGCAGAACCGTTGCAACCGTGGCCAGGCTGGCAAGGCTGCCTTTGGACATAATTCCGTCCATTTGTTGACGCGGTAACAACGCTTAATACCTCTCAGTTGCGGCTCACAATCGGACTTTTCTACACTCCATCGAAACAGCAGTACCGCCTCGACACGCGACCAATCATGCCCCGTGCTTTGTATACCCTTGGCTTCGACAAATTACGGAAAATGGACAATTTCCATTCGGTCGCATCCGCTACGTGAGCAATTTGTTCGGACGCGTGGGCGG]
[-] EMBL CNS09JJ9 [ CGTCCATTTGTTGACGCGGTAACAACGCTTAATACCTCTCAGTTGCGGCTCACAATCGGACTTTTCTACACTCCATCGAAACAGCA ]
consensusID : consensus_8023#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 478 fasta sequence
[TAAGGTGTACAGCGGTGGCGCTCAGTATGATGCAGGATATGACCATCATTTGGCGTATCACCTCCCGCTTGTTTACGCAGAATATGAATAAACACCACAGTGTAGGAGATAAAACAGTGCGGATCCGATAAAGTTGACTAGTATCAGAGTACTTTCCTCCGTCAGGACACCATACTTGAGCCACATGAAACAGGAAAGAAATCCGAATATGAAGGGGAAGGCTGATGTGTCTCCTGTTGATTTCTTCCGAATGTAACGATTACAAATCACAGTGCCAGTAAGAAACTGCAGAACCGTTGCAACCGTGGCCAGGCTGGCAAGGCTGCCTTTGGACATAATTCCGTCCATTTGTTGACGCGGTAACAACGCTTAATACCTCTCAGTTGCGGCTCACAATCGGACTTTTCTACACTCCATCGAAACAGCAGTACCGCCACGAGCACGCGAGCAATCATGCCCCGTNAATCCTCGTGCGATC]
[-] EMBL BX469533 [TAAGGTGTACAGCGGTGGCGCTCAGTATGATGCAGGATATGACCATCATTTGGCGTATCACCTCCCGCTTGTTTACGCAGAATATGAATAAACACCACAGTGTAGGAGATAAAACAGTGCGGATCCGATAAAGTTGACTAGTATCAGAGTACTTTCCTCCGTCAGGACACCATACTTGAGCCACATGAAACAGGAAAGAAATCCGAATATGAAGGGGAAGGCTGATGTGTCTCCTGTTGATTTCTTCCGAATGTAACGATTACAAATCACAGTGCCAGTAAGAAACTGCAGAACCGTTGCAACCGTGGCCAGGCTGGCAAGGCTGCCTTTGGACATAATTCCGTCCATTTGTTGACGCGGTAACAACGCTTAATACCTCTCAGTTGCGGCTCACAATCGGACTTTTCTACACTCCATCGAAACAGCAGTACCGCCACGAGCACGCGAGCAATCATGCCCCGTNAATCCTCGTGCGATC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8023#0 TACATAGATATTTTTTTGTATTAACTGGTGCGTTAATCCAAATAATGTTAACAATACGCA 60
consensus_8023#2 ------------------------------------------------------------
consensus_8023#1 ------------------------------------------------------------
consensus_8023#0 CTGGCCCATGCTTACCTAGCTTACCTATACCATAGGAATACTACAAAATTGGGTTTTCTG 120
consensus_8023#2 ------------------------------------------------------------
consensus_8023#1 ------------------------------------------------------------
consensus_8023#0 ATACCAGAGGTGAATACCGCGGTCCACCGCTGAAGGAAGCTTTCTTTTTCGGGTATATCA 180
consensus_8023#2 ------------------------------------------------------------
consensus_8023#1 ------------------------------------------------------------
consensus_8023#0 CATACAGAGTCAACTGAATTCCAGCCAATATTCCACCAAGAAGATTTGGAATCTGTATAA 240
consensus_8023#2 ------------------------------------------------------------
consensus_8023#1 ------------------------------------------------------------
consensus_8023#0 ATCGATCACCAATAAGTACGCCATAGGCCGTCCAAAGTAAGCACACGAAAAACGATGCCA 300
consensus_8023#2 ------------------------------------------------------------
consensus_8023#1 ------------------------------------------------------------
consensus_8023#0 TAATGATCGGAAAAGGAAGACTGTCCGTATTCTGGGTACGGATGACATGCGCTAACATTG 360
consensus_8023#2 ------------------------------------------------------------
consensus_8023#1 ------------------------------------------------------------
consensus_8023#0 TAAGCGGTGATGCGAAAAACAAAACCGCCAAACAGCAGCAAAGCAGACCTATGACACGGA 420
consensus_8023#2 ------------------------------------------------------------
consensus_8023#1 ------------------------------------------------------------
consensus_8023#0 TCGACTTCTCATCGTCCGTCTCGAATAAGGTGTACAGCG-TGGCGCTCAGTATGATGCAG 479
consensus_8023#2 -------------------------TAAGGTGTACAGCGGTGGCGCTCAGTATGATGCAG 35
consensus_8023#1 ------------------------------------------------------------
consensus_8023#0 GATATGACCATCATTTGGCGTATCACCTCCCGCTTGTTTACGCAGAATATGAA-AAACAC 538
consensus_8023#2 GATATGACCATCATTTGGCGTATCACCTCCCGCTTGTTTACGCAGAATATGAATAAACAC 95
consensus_8023#1 ---------------------ATCACCTCCCGCTTGTTTACGCAGAATATGAA-AAACAC 38
******************************** ******
consensus_8023#0 CACAGTGTAGGAGA-AAAACAGTGCGGATCCGATAAAGTTGACCAGTATCAGAGTACTTT 597
consensus_8023#2 CACAGTGTAGGAGATAAAACAGTGCGGATCCGATAAAGTTGACTAGTATCAGAGTACTTT 155
consensus_8023#1 CACAGTGTAGGAGA-AAAACAGTGCGGATCCGATAAAGTTGACCAGTATCAGAGTACTTT 97
************** **************************** ****************
consensus_8023#0 CCTCCGTCAGGACACCATACTTGAGCCACATGAAACAGGAAAGAAATCCGGATATGAAGG 657
consensus_8023#2 CCTCCGTCAGGACACCATACTTGAGCCACATGAAACAGGAAAGAAATCCGAATATGAAGG 215
consensus_8023#1 CCTCAGTCAGGACACCATACTTGAGCCACATGAAACAGGAAAGAAATCCGGATATGAAGG 157
**** ********************************************* *********
consensus_8023#0 GGAAGGCTGATGTGTCTCCTGTTGATTTCTTCCGAATGTAACGATTACAAATCACAGTGC 717
consensus_8023#2 GGAAGGCTGATGTGTCTCCTGTTGATTTCTTCCGAATGTAACGATTACAAATCACAGTGC 275
consensus_8023#1 GGAAGGCTGATGTGTCTCCTGTTGATTTCTTCCGAATGTAACGATTACAAATCACAGTGC 217
************************************************************
consensus_8023#0 CAGTAAGAAACTGCAGAACCGTTGCAACCGTGGCCAGGCTGGCAAGGCTGCCTTTGGACA 777
consensus_8023#2 CAGTAAGAAACTGCAGAACCGTTGCAACCGTGGCCAGGCTGGCAAGGCTGCCTTTGGACA 335
consensus_8023#1 CAGTAAGAAACTGCAGAACCGTTGCAACCGTGGCCAGGCTGGCAAGGCTGCCTTTGGACA 277
************************************************************
consensus_8023#0 TAATTCCGTCCATTTGTTGACGCGGTAACAACGCTTAATACCTCTCAGTTGCGGCTCACA 837
consensus_8023#2 TAATTCCGTCCATTTGTTGACGCGGTAACAACGCTTAATACCTCTCAGTTGCGGCTCACA 395
consensus_8023#1 TAATTCCGTCCATTTGTTGACGCGGTAACAACGCTTAATACCTCTCAGTTGCGGCTCACA 337
************************************************************
consensus_8023#0 ATCGGACTTTTCTACACTCCATCGAAACAGCAGTACCGCCACGA-CACGCGAGCAATCAT 896
consensus_8023#2 ATCGGACTTTTCTACACTCCATCGAAACAGCAGTACCGCCACGAGCACGCGAGCAATCAT 455
consensus_8023#1 ATCGGACTTTTCTACACTCCATCGAAACAGCAGTACCGCCTCGA-CACGCGACCAATCAT 396
**************************************** *** ******* *******
consensus_8023#0 GCCCCGTG---CTTTGTATACCCTTGGCTTTGATAAATTATAGAAAATGGACAATTTCCA 953
consensus_8023#2 GCCCCGTNAATCCTCGTGCGATC------------------------------------- 478
consensus_8023#1 GCCCCGTG---CTTTGTATACCCTTGGCTTCGACAAATTACGGAAAATGGACAATTTCCA 453
******* * * ** *
consensus_8023#0 TTCGGTCGCATCCGCTACCGGAGCAATTTGTTTATAATCAGACGTGTTTTTGACAAATAA 1013
consensus_8023#2 ------------------------------------------------------------
consensus_8023#1 TTCGGTCGCATCCGCTACGTGAGCAATTTGTTCGGACGCGTGGGCGG------------- 500
consensus_8023#0 CGGTACGTGTACACATCGGTTGCTAACTGCGCCCGGTTGGTCCATTTCCACCGCATTTGA 1073
consensus_8023#2 ------------------------------------------------------------
consensus_8023#1 ------------------------------------------------------------
consensus_8023#0 CAGTTGACGGCAGAACACTTGTTTGCACACGAAAAGTTTTACTCCTCCATCTTTTCCGAC 1133
consensus_8023#2 ------------------------------------------------------------
consensus_8023#1 ------------------------------------------------------------
consensus_8023#0 TGAGCCTTAAGCACTTATGAACACGAGCC 1162
consensus_8023#2 -----------------------------
consensus_8023#1 -----------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||