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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8039#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 1174 fasta sequence
[TCCAGCAAGACAGCAAAGCTTCTTTTCGCCGTTTTGTTGTTGTTATTCAACAATTGATATTCGTTATTTGTTTATCTGTTTTGATGCCACATCTTTTTCTCAATTAGTGGTTTTGCAGAGAACAAAAATGGGGCCAAATTTTCATCATCGAAAATATTCCAGAAATTAATTCGATCGATTTCACCCACCCACGATAGAGCAAGAAAATGTTCAGTATCGACAATCCGATCAAGCAAGCTCCAAGCCGAATTCGATCCTATCCTGTCACCGGTTGGAATGTTGATGTTCCGAAAGGCGGTTAAAATTAGTTGATAAACAAAAGCGCTCGCTCTCTGCGGCAGTTCGTTTGCGCGTTGCACTTTTTTTGTTGCGATTTGGC-GTCCTTGTTAATTTTAGCAACAAGTGTTTTGTATGTTTTGTTTTGCATCGCGTGATAATAATAGCAATCGGCGTCGAAAATGAACATGCTTGAAGCCAACATGCGTAAGGTTAGCGATAGCCTGAACAGCACCGTCCGATTGGCGGCAGAGTTTGGTGATGAATCATTAAAAGATTTAAAGCTTTACACCAGTCTGGTGGAAAAGCTGTGCGAAATTGACAGCAAAATGAACACCCACCGGAAGGCGCTAGCGGAATCCTACGCAGAGCAAACCGTGGAATGCTTCGACCAGCGCTATGAAACGAGTATAGATCGGAAGAAACCCCAGGTCCGGGGGCACAAACGCTACAAGGACTTTGTGCAGTACGCCAAACCGCTGCTCAATCCATCGCTGCAAGGTCAGCCCTCCCAAAACGACAATGACGATGATGATGATGGCGATTTGGTGATGGAGGCCGACGTGGGCAATATGGTTGACCCGATCTCGAAGCGCCCGCTGGAGGTGCCGGTGCGCAACAAGCAGTGCAATCATGTGTACGAAAAGAGCGTCATCGAGAATCTGTTGAAGCAGAACCCGCGTACCCGCTGCCCGGTGATGGGCTGCGCAGCGCAAGGATACGTTCAGCAGCATTTGCTAGAGGTTGACGTTAGATTGCAGCAGCAGCTCATTCAAACCCGGTCGGTGTTTACCTAAAATCGTGATCAGTGGGAGTTGAGTTTTAGTGCCGATGAGTGCGTTTGTTACACGGGTGCACCATAGACCTCCAATATGGACATATTCTCTCAGATTTTCGT]
[+] EMBL BX602550 [TCCAGCAAGACAGCAAAGCTTCTTTTCGCCGTTTTGTTGTTGTTATTCAACAATTGATATTCGTTATTTGTTTATCTGTTTTGATGCCACATCTTTTTCTCAATTAGTGGTTTTGCAGAGAACAAAAATGGGGCCAAATTTTCATCATCGAAAATATTCCAGAAATTAATTCGATCGATTTCACCCACCCACGATAGAGCAAGAAAATGTTCAGTATCGACAATCCGATCAAGCAAGCTCCAAGCCGAATTCGATCCTATCCTGTCACCGGTTGGAATGTTGATGTTCCGAAAGGCGGTTAAAATTAGTTGATAAACAAAAGCGCTCGCTCTCTGCGGCAGTTCGTTTGCGCGTTGCACTTTTTTTGTTGCGATTTGGC GTCCTTGTTAATTTTAGCAACAAGTGTTTTGTATGTTTTGTTTTGCATCGCGTGATAATAATAGCAATCGGCGTCGAAAATGAACATGCTTGAAGCCAACATGCGTAAGGTTAGCGATAGCCTGAACAGCACCGTCCGATTGGCGGCAGAGTTTGGTGATGAATCATTAAAAGATTTAAAGCTTTAC ]
[+] EMBL BM654759 [ ccGCAGTTCGTTTGCGCGTTGCACTTTTTTTGTTGCGATTTGGC GTCCTTGTTAATTTTAGCAACAAGTGTTTTGTATGTTTTGTTTTGCATCGCGTGATAATAATAGCAATCGGCGTCGAAAATGAACATGCTTGAAGCCAACATGCGTAAGGTTAGCGATAGCCTGAACAGCACCGTCCGATTGGCGGCAGAGTTTGGTGATGAATCATTAAAAGATTTAAAGCTTTACACCAGTCTGGTGGAAAAGCTGTGCGAAATTGACAGCAAAATGAACACCCACCGGAAGGCGCTAGCGGAATCCTACGCAGAGCAAACCGTGGAATGCTTCGACCAGCGCTATGAAACGAGTATAGATCGGAAGAAACCCCAGGTCCGGGGGCACAAACGCTACAAGGACTTTGTGCAGTACGCCAAACCGCTGCTCAATCCATCGCTGCAAGGTCAGCCCTCCCAAAACGACAATGACGATGATGATGATGGCGATTTGGTGATGGAGGCCGACGTGGGCAATATGGTTGACCCGATCTCGAAGCGCCCGCTGGAGGTGCCGGTGCGCAACAAGCAGTGCAATCATGTGTACGAAAAGAGCGTCATCGAGAATCTGTTGAAGCAGAACCCGCGTACCCGCTGCCCGGTGATGGGCTGCGCAGCGCAAGGATACGTTCAGCAGCATTTGCTAGAGGTTGA ]
[+] EMBL BX610370 [ TGGCTGTCCTTGTTAATTTTAGCAACAAGTGTTTTGTATGTTTTGTTTTGCATCGCGTGATAATAATAGCAATCGGCGTCGAAAATGAACATGCTTGAAGCCAACATGCGTAAGGTTAGCGATAGCCTGAACAGCACCGTCCGATTGGCGGCATAGTTTGGTGATGAATCATTAAAAGATTTAAAGCTTTACACCAGTCTGGTGGAAAAGCTGTGCGAAATTGACAGCAAAATGAACACCCACCGGAAGGCGCTAGCGGAATCCTACGCAGAGCAAACCGTGGAATGCTTCGACCAGCGCTATGAAACGAGTATAGATCGGAAGAAACCCCAGGTCCGGGGGCACAAACGCTACAAGGACTTTGTGCAGTACGCCAAACCGCTGCTCAATCCAT GCTGCAAGGTCAGCCCTCCCAAAACGACAATGACGATGATGATGATGGCGATTTGGTGATGGAGGCCGACGTGGGCAATATGGTTGACCCGATCTCGAAGCGCCCGCTGGAGGTGCCGGTGCGCAACAAGCAGTGCAATCATGTGTACGAAAAGAGCGTCATCGAGAATCTGTTGAAGCAGAACCCGCGTACCCGCTGCCCGGTGATGGGCTGCTCAGCGCAAGGATACGTTCAGCAGCATTTGCTAGAGGTTGACGTTAGATTGCAGCAGCAGCTCATTCAAACCCGGTCGGTG ]
[+] EMBL BX617971 [ ttGC GTCCTTGTTAATTTTAGCAACAAGTGTTTTGTATGTTTTGTTTTGCATCGCGTGATAATAATAGCAATCGGCGTCGAAAATGAACATGCTTGAAGCCAACATGCGTAAGGTTAGCGATAGCCTGAACAGCACCGTCCGATTGGCGGCATAGTTTGGTGATGAATCATTAAAAGATTTAAAGCTTTACACCAGTCTGGTGGAAAAGCTGTGCGAAATTGACAGCAAAATGAACACCCACCGGAAGGCGCTAGCGGAATCCTACGCAGAGCAAACCGTGGAATGCTTCGACCAGCGCTATGAAACGAGTATAGATCGGAAGAAACCCCAGGTCCGGGGGCACAAACGCTACAAGGACTTTGTGCAGTACGCCAAACCGCTGCTCAATCCAT GCTGCAAGGTCAGCCCTCCCAAAACGACAATGACGATGATGATGATGGCGATTTGGTGATGGAGGCCGACGTGGGCAATATGGTTGACCCGATCTCGAAGCGCCCGCTGGAGGTGCCGGTGCGCAACAAGCAGTGCAATCATGTGTACGAAAAGAGCGTCATCGAGAATCTGTTGAAGCAGAACCCGCGTACCCGCTGCCCGGTGATGGGCTGCTCAGCGCAAGGATACGTTCAGCAGCATTTGCTAGAGGTTGACGTTAGATTGCAGCAGCAGCTCATTCAAA ]
[+] EMBL BX609142 [ TTTAGCAACAAGTGTTTTGTATGTTTTGTTTTGCATCGCGTGATAATAATAGCAATCGGCGTCGAAAATGAACATGCTTGAAGCCAACATGCGTAAGGTTAGCGATAGCCTGAACAGCACCGTCCGATTGGCGGCATAGTTTGGTGATGAATCATTAAAAGATTTAAAGCTTTACACCAGTCTGGTGGAAAAGCTGTGCGAAATTGACAGCAAAATGAACACCCACCGGAAGGCGCTAGCGGAATCCTACGCAGAGCAAACCGTGGAATGCTTCGACCAGCGCTATGAAACGAGTATAGATCGGAAGAAACCCCAGGTCCGGGGGCACAAACGCTACAAGGACTTTGTGCAGTACGCCAAACCGCTGCTCAATCCAT GCTGCAAGGTCAGCCCTCCCAAAACGACAATGACGATGATGATGATGGCGATTTGGTGATGGAGGCCGACGTGGGCAATATGGTTGACCCGATCTCGAAGCGCCCGCTGGAGGTGCCGGTGCGCAACAAGCAGTGCAATCATGTGTACGAAAAGAGCGTCATCGAGAATCTGTTGAAGCAGAACCCGCGTACCCGCTGCCCGGTGATGGGCTGCTCAGCGCAAGGATACGTTCAGCAGCATTTGCTAGAGGTTGACGTT ]
[+] EMBL BM596611 [ ccgTTTGTTTTGCATCGCGTGATAATAATAGCAATCGGCGTCGAAAATGAACATGCTTGAAGCCAACATGCGTAAGGTTAGCGATAGCCTGAACAGCACCGTCCGATTGGCGGCAGAGTTTGGTGATGAATCATTAAAAGATTTAAAGCTTTACACCAGTCTGGTGGAAAAGCTGTGCGAAATTGACAGCAAAATGAACACCCACCGGAAGGCGCTAGCGGAATCCTACGCAGAGCAAACCGTGGAATGCTTCGACCAGCGCTATGAAACGAGTATAGATCGGAAGAAACCCCAGGTCCGGGGGCACAAACGCTACAAGGACTTTGTGCAGTACGCCAAACCGCTGCTCAATCCATCGCTGCAAGGTCAGCCCTCCCAAAACGACAATGACGATGATGATGATGGCGATTTGGTGATGGAGGCCGACGTGGGCAATATGGTTGACCCGATCTCGAAGCGCCCGCTGGAGGTGCCGGTGCGCAACAAGCAGTGCAATCATGTGTACGAAAAGAGCGTCATCGAGAATCTGTTGAAGCAGAACCCGCGTACCCGCTGCCCGGTGATGGGCTGCGCAGCGCAAGGATACGTTCAGCAGCATTTGCTAGAGGTTGACGTTAGATTGCAGCAGCAGCTCATTCAAACCCGGTC ]
[+] EMBL BM638347 [ ccgCATGCGTAAGGTTAGCGATAGCCTGAACAGCACCGTCCGATTGGCGGCAGAGTTTGGTGATGAATCATTAAAAGATTTAAAGCTTTACACCAGTCTGGTGGAAAAGCTGTGCGAAATTGACAGCAAAATGAACACCCACCGGAAGGCGCTAGCGGAATCCTACGCAGAGCAAACCGTGGAATGCTTCGACCAGCGCTATGAAACGAGTATAGATCGGAAGAAACCCCAGGTCCGGGGGCACAAACGCTACAAGGACTTTGTGCAGTACGCCAAACCGCTGCTCAATCCATCGCTGCAAGGTCAGCCCTCCCAAAACGACAATGACGATGATGATGATGGCGATTTGGTGATGGAGGCCGACGTGGGCAATATGGTTGACCCGATCTCGAAGCGCCCGCTGGAGGTGCCGGTGCGCAACAAGCAGTGCAATCATGTGTACGAAAAGAGCGTCATCGAGAATCTGTTGAAGCAGAACCCGCGTACCCGCTGCCCGGTGATGGGCTGCGCAGCGCAAGGATACGTTCAGCAGCATTTGCTAGAGGTTGACGTTAGATTGCAGCAGCAGCTCATTCAAACCCGGTCGGTGT ]
[+] EMBL BM595288 [ ccgGAAACGAGTATAGATCGGAAGAAACCCCAGGTCCGGGGGCACAAACGCTACAAGGACTTTGTGCAGTACGCCAAACCGCTGCTCAATCCATCGCTGCAAGGTCAGCCCTCCCAAAACGACAATGACGATGATGATGATGGCGATTTGGTGATGGAGGCCGACGTGGGCAATATGGTTGACCCGATCTCGAAGCGCCCGCTGGAGGTGCCGGTGCGCAACAAGCAGTGCAATCATGTGTACGAAAAGAGCGTCATCGAGAATCTGTTGAAGCAGAACCCGCGTACCCGCTGCCCGGTGATGGGCTGCGCAGCGCAAGGATACGTTCAGCAGCATTTGCTAGAGGTTGACGTTAGATTGCAGCAGCAGCTCATTCAAACCCGGTCGGTGTTTACCTAAAATCGTGATCAGTGGGAGTTGAGTTTTAGTGCCGATGAGTGCGTTTGTTACACGGGTGCACCATAGACCTCCAATATGGACATATTCTCTCAGATTTTCGT]
consensusID : consensus_8039#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 598 fasta sequence
[GAATNGCCCGAGGTCAACGGCGTCGAAAATGAACATGCTTGAAGCCAACATGCGTAAGGTTAGCGACAGCCTGAACAGCACCGTCCGATTGGCGGCAGAGTTTGGTGATGAGTCATTAAAAGATTTAAAGCTTTATACCAGTCTGGTGGAAAAGCTGTGCGAAATTGACAGCAAAATGAACACCCACCGGAAGGCGCTAGCGGAATCCTACGCAGAGCAAACCGTGGAATGCTTCGACCAGCGCTATGAAACGAGTATAGATCGGAAGAAACCACAGGTCCGTGGGCATAAACGCTACAAGGACTTTGTGCAGTACGCCAAACCGCTGCTCAATCCATCGCTGCAAGGCCAGCCCTCCCAAAACGACAATGACGATGATGATGATGGCGATTTGGTGATGGAGGCCGACGTGGGCAATATGGTCGACCCGATCTCGAAGCGCCCGCTGGAGGTGCCGGTGCGCAACAAGCAGTGCAATCACGTGTACGAAAAGAGCGTCATCGAGAATCTGTTGAAGCAGAACCCGCGTACCCGCTGCCCGGTGATGGGCTGCGCAGCGCAAGGATACGTTCAGCAGCATTTGCTANCAGGTTGACGT]
[+] EMBL AL934658 [GAATNGCCCGAGGTCAACGGCGTCGAAAATGAACATGCTTGAAGCCAACATGCGTAAGGTTAGCGACAGCCTGAACAGCACCGTCCGATTGGCGGCAGAGTTTGGTGATGAGTCATTAAAAGATTTAAAGCTTTATACCAGTCTGGTGGAAAAGCTGTGCGAAATTGACAGCAAAATGAACACCCACCGGAAGGCGCTAGCGGAATCCTACGCAGAGCAAACCGTGGAATGCTTCGACCAGCGCTATGAAACGAGTATAGATCGGAAGAAACCACAGGTCCGTGGGCATAAACGCTACAAGGACTTTGTGCAGTACGCCAAACCGCTGCTCAATCCATCGCTGCAAGGCCAGCCCTCCCAAAACGACAATGACGATGATGATGATGGCGATTTGGTGATGGAGGCCGACGTGGGCAATATGGTCGACCCGATCTCGAAGCGCCCGCTGGAGGTGCCGGTGCGCAACAAGCAGTGCAATCACGTGTACGAAAAGAGCGTCATCGAGAATCTGTTGAAGCAGAACCCGCGTACCCGCTGCCCGGTGATGGGCTGCGCAGCGCAAGGATACGTTCAGCAGCATTTGCTANCAGGTTGACGT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8039#0 TCCAGCAAGACAGCAAAGCTTCTTTTCGCCGTTTTGTTGTTGTTATTCAACAATTGATAT 60
consensus_8039#1 ------------------------------------------------------------
consensus_8039#0 TCGTTATTTGTTTATCTGTTTTGATGCCACATCTTTTTCTCAATTAGTGGTTTTGCAGAG 120
consensus_8039#1 ------------------------------------------------------------
consensus_8039#0 AACAAAAATGGGGCCAAATTTTCATCATCGAAAATATTCCAGAAATTAATTCGATCGATT 180
consensus_8039#1 ------------------------------------------------------------
consensus_8039#0 TCACCCACCCACGATAGAGCAAGAAAATGTTCAGTATCGACAATCCGATCAAGCAAGCTC 240
consensus_8039#1 ------------------------------------------------------------
consensus_8039#0 CAAGCCGAATTCGATCCTATCCTGTCACCGGTTGGAATGTTGATGTTCCGAAAGGCGGTT 300
consensus_8039#1 ------------------------------------------------------------
consensus_8039#0 AAAATTAGTTGATAAACAAAAGCGCTCGCTCTCTGCGGCAGTTCGTTTGCGCGTTGCACT 360
consensus_8039#1 ------------------------------------------------------------
consensus_8039#0 TTTTTTGTTGCGATTTGGCGTCCTTGTTAATTTTAGCAACAAGTGTTTTGTATGTTTTGT 420
consensus_8039#1 ------------------------------------------------------------
consensus_8039#0 TTTGCATCGCGTGATAATAATAGCAATCGGCGTCGAAAATGAACATGCTTGAAGCCAACA 480
consensus_8039#1 ---GAATNGCCCGAGGTCAA-------CGGCGTCGAAAATGAACATGCTTGAAGCCAACA 50
* ** ** ** ** *********************************
consensus_8039#0 TGCGTAAGGTTAGCGATAGCCTGAACAGCACCGTCCGATTGGCGGCAGAGTTTGGTGATG 540
consensus_8039#1 TGCGTAAGGTTAGCGACAGCCTGAACAGCACCGTCCGATTGGCGGCAGAGTTTGGTGATG 110
**************** *******************************************
consensus_8039#0 AATCATTAAAAGATTTAAAGCTTTACACCAGTCTGGTGGAAAAGCTGTGCGAAATTGACA 600
consensus_8039#1 AGTCATTAAAAGATTTAAAGCTTTATACCAGTCTGGTGGAAAAGCTGTGCGAAATTGACA 170
* *********************** **********************************
consensus_8039#0 GCAAAATGAACACCCACCGGAAGGCGCTAGCGGAATCCTACGCAGAGCAAACCGTGGAAT 660
consensus_8039#1 GCAAAATGAACACCCACCGGAAGGCGCTAGCGGAATCCTACGCAGAGCAAACCGTGGAAT 230
************************************************************
consensus_8039#0 GCTTCGACCAGCGCTATGAAACGAGTATAGATCGGAAGAAACCCCAGGTCCGGGGGCACA 720
consensus_8039#1 GCTTCGACCAGCGCTATGAAACGAGTATAGATCGGAAGAAACCACAGGTCCGTGGGCATA 290
******************************************* ******** ***** *
consensus_8039#0 AACGCTACAAGGACTTTGTGCAGTACGCCAAACCGCTGCTCAATCCATCGCTGCAAGGTC 780
consensus_8039#1 AACGCTACAAGGACTTTGTGCAGTACGCCAAACCGCTGCTCAATCCATCGCTGCAAGGCC 350
********************************************************** *
consensus_8039#0 AGCCCTCCCAAAACGACAATGACGATGATGATGATGGCGATTTGGTGATGGAGGCCGACG 840
consensus_8039#1 AGCCCTCCCAAAACGACAATGACGATGATGATGATGGCGATTTGGTGATGGAGGCCGACG 410
************************************************************
consensus_8039#0 TGGGCAATATGGTTGACCCGATCTCGAAGCGCCCGCTGGAGGTGCCGGTGCGCAACAAGC 900
consensus_8039#1 TGGGCAATATGGTCGACCCGATCTCGAAGCGCCCGCTGGAGGTGCCGGTGCGCAACAAGC 470
************* **********************************************
consensus_8039#0 AGTGCAATCATGTGTACGAAAAGAGCGTCATCGAGAATCTGTTGAAGCAGAACCCGCGTA 960
consensus_8039#1 AGTGCAATCACGTGTACGAAAAGAGCGTCATCGAGAATCTGTTGAAGCAGAACCCGCGTA 530
********** *************************************************
consensus_8039#0 CCCGCTGCCCGGTGATGGGCTGCGCAGCGCAAGGATACGTTCAGCAGCATTTGCTAG-AG 1019
consensus_8039#1 CCCGCTGCCCGGTGATGGGCTGCGCAGCGCAAGGATACGTTCAGCAGCATTTGCTANCAG 590
******************************************************** **
consensus_8039#0 GTTGACGTTAGATTGCAGCAGCAGCTCATTCAAACCCGGTCGGTGTTTACCTAAAATCGT 1079
consensus_8039#1 GTTGACGT---------------------------------------------------- 598
********
consensus_8039#0 GATCAGTGGGAGTTGAGTTTTAGTGCCGATGAGTGCGTTTGTTACACGGGTGCACCATAG 1139
consensus_8039#1 ------------------------------------------------------------
consensus_8039#0 ACCTCCAATATGGACATATTCTCTCAGATTTTCGT 1174
consensus_8039#1 -----------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||