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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8051#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 672 fasta sequence
[CCGCCCCCG-CGATCATGGCAGCGAAAGGACGATTGTCTGGGCGGTGCATTGTGTCAATAGCCGCCGTACTGCTGCTTCCGGCATCATGTATCGCACAATCGTCGAGCACTTACGGCGACACCGGCACTGATACGGTACCGCAAAGGTCAAGTGGCTTCGGGTACGAGCTAATCCGCAATCAGCTCGAGGAAATGCAAGATAGCATCACACAGCTGCAGCAAAC-GGCGGAGAGCCGTAGTGCGTGTGCCGGACTGGAAGCCAACATTGCCACCATACTGAGGC-GGCTCGAAACGATCGAAAACGGACTGAACGCAATGCCTCAATCACCAGCCATTTCCATGCCGGCACGTCCGATATA-CGATCAAGCACCGCTAACTCCAGCATACAGTGCACGGCCGTCAAGAGGCCGTACCATCGATATCGACAGGATGAAAGCAGAGGCAGACGA-TA-TG-TT-TG-AAGAACAGCGATCGCGTGCCAGAGCTCGAGCG-ATGGCTCATC-AACAAAGGGAACA-GTCCGTGTTCGA----CCGCGTTTA--CGAC-TCG-TGTGAC-GATGTG-CCGAGCTCGGGCA-CGT-GG-A-AGATTCGACAAGGTACACAGATAGCAAACGTACACTGTATCAAGTTCTAAACGTCGGCCTTAATCCATTCAT-TCTACAAATAAAAGATGGGAAATAATGATC]
[+] EMBL BM591534 [CCGCCCACG CG TCCGGGCAGCGAAAGGACGATTGTCTGGGCGGTGCATTGTGTCAATAGCCGCCGTACTGCTGCTTCCGGCATCATGTATCGCACAATCGTCGAGCACTTACGGCGACACCGGCACTGATACGGTACCGCAAAGGTCAAGTGGCTTCGGGTACGAGCTAATCCGCAATCAGCTCGAGGAAATGCAAGATAGCATCACACAGCTGCAGCAAAC GGCGGAGAGCCGTAGTGCGTGTGCCGGACTGGAAGCCAACATTGCCACCATACTGAGGC GGCTCGAAACGATCGAAAACGGACTGAACGCAATGCCTCAATCACCAGCCATTTCCATGCCGGCACGTCCGATATA CGATCAAGCACCGCTAACTCCAGCATACAGTGCACGGCCGTCAAGAGGCCGTACCATCGATATCGACAGGATGAAAGCAGAGGCAGACGA TA TG TT TG AAGAACAGCGATCGCGTGCCAGAGCTCGAGCG ATGGCTCATC AACAAAGGGAACA GTCCGTGTTCGA CCGCGTTTA CGAC TCG TGTGAC GATGTG CCGAGCTCGGGCA CGT GG A AGATTCGACAAGGTACACAGATAGCAAACGTACACTGTATCAAGTTCTAAACGTCGGCCT ]
[+] EMBL AL931740 [ CCCCG AGGT TGGCAGCGAAAGGACGATTGTCTGGGCGGTGCATTGTGTCAATAGCCGCCGTACTGCTGCTTCCGG CATGTATCGCACAATCGTCGAGCACTTACGGCGACACCGGCACTGATACGGTACCGCAAAGGTCAAGTGGCTTCGGGTACGAGCTAATCCGCAATCAGCTCGAGGAAATGCAAGATAGCATCACACAGCTGCAGCAAAC GGCGGAGAGCCGTAGTGCGTGTGCCGGACTGGAAGCCAACATTGCCACCATACTGAGGC GGCTCGAAACGATCGAAAACGGACTGAACGCAATGCCTCAATCACCAGCCATTTCCATGCCAGCACGTCCGATATA CGATCAAGCACCGCTAACTCCAGCATACAGTGCACGGCCGTCAAGAGGCCGTACCATCGATATCGACAGGATGAAAGCAGAGGCAGACGA TA TG TT TG AAGAACAGCG ]
[+] EMBL AL693744 [ gCCCGAGGNTTATGGCAGCGAAAGGACGATTGTCTGGGCGGTGCATTGTGTCAATAGCCGCCGTACTGCTGCTTCCGGCATCATGTATCGCACAATCGTCGAGCACTTACGGCGACACCGGCACTGATACGGTACCGCAAAGGTCAAGTGGCTTCGGGTACGAGCTAATCCGCAATCAGCTCGAGGAAATGCAAGATAGCATCACACAGCTGCAGCAAACTGGCGGAGAGCCGTAGTGCGTGTGCCGGACTGGAAGCCAACATTGCCACCATACTGAGGCTGGCTCGAAACGATCGAAAACGGACTGAACGCAATGCCTCAATCACCAGCCATTTCCATGCCGGCACGTCCGATATACCGATCAAGCACCGCTAACTCCAGCATACAGTGCACGG CGTCAAGAGGCCGTACCATCGATATCGACAGGATGAAAGCAGAGGCAGACGACTACTGCTTCTGAAAGAACAGCGATCGCGTGCCAGAGCTCGAGCGCATGGCTCATCAAACAAAGGGAACACGTCCGTGTTCGAACCGCCGCTTTTACNCGACATCGNTGTGACGGATGTGCCCGAGCTCGGGCACCGTCGGCACAGAT ]
[+] EMBL BM627527 [ CCG CGATCATGGCAGCGAAAGGACGATTGTCTGGGCGGTGCATTGTGTCAATAGCCGCCGTACTGCTGCTTCCGGCATCATGTATCGCACAATCGTCGAGCACTTACGGCGACACCGGCACTGATACGGTACCGCAAAGGTCAAGTGGCTTCGGGTACGAGCTAATCCGCAATCAGCTCGAGGAAATGCAAGATAGCATCACACAGCTGCAGCAAAC GGCGGAGAGCCGTAGTGCGTGTGCCGGACTGGAAGCCAACATTGCCACCATACTGAGGC GGCTCGAAACGATCGAAAACGGACTGAACGCAATGCCTCAATCACCAGCCATTTCCATGCCGGCACGTCCGATATA CGATCAAGCACCGCTAACTCCAGCATACAGTGCACGGCCGTCAAGAGGCCGTACCATCGATATCGACAGGATGAAAGCAGAGGCAGACGA TA TG TT TG AAGAACAGCGATCGCGTGCCAGAGCTCGAGCG ATGGCTCATC AACAAAGGGAACA GTCCGTGTTCGA CCGCGTTTA CGAC TCG TGTGAC GATGTG CCGAGCTCGGGCA CGT GG A AGATTCGACAAGGTACACAGATAGCAAACGTACACTGTATCAAGTTCTAAACGTCGGCCTTAATCCATT ]
[+] EMBL BM584125 [ CCG CGATCATGGCAGCGAAAGGACGATTGTCTGGGCGGTGCATTGTGTCAATAGCCGCCGTACTGCTGCTTCCGGCATCATGTATCGCACAATCGTCGAGCACTTACGGCGACACCGGCACTGATACGGTACCGCAAAGGTCAAGTGGCTTCGGGTACGAGCTAATCCGCAATCAGCTCGAGGAAATGCAAGATAGCATCACACAGCTGCAGCAAAC GGCGGAGAGCCGTAGTGCGTGTGCCGGACTGGAAGCCAACATTGCCACCATACTGAGGC GGCTCGAAACGATCGAAAACGGACTGAACGCAATGCCTCAATCACCAGCCATTTCCATGTCGGCACGTCCGATATA CGATCAAGCACCGCTAACTCCAGCATACAGTGCACGGCCGTCAAGAGGCCGTACCATCGATATCGACAGGATGAAAGCAGAGGCAGACGA TA TG TT TG AAGAACAGCGATCGCGTGCCAGAGCTCGAGCG ATGGCTCATC AACAAAGGGAACA GTCCGTGTTCGA CCGCGTTTA CGAC TCG TGTGAC GATGTG CCGAGCTCGGGCA CGT GG A AGATTCGACAAGGTACACAGATAGCAAACGTACACTGTATCAAGTTCTAAACGTCGGCCTTAATCCATTCAT TCTACAAATAAAAGATGGGAAATAATGATC]
[+] EMBL BM644559 [ c CGATCATGGCAGCGAAAGGACGATTGTCTGGGCGGTGCATTGTGTCAATAGCCGCCGTACTGCTGCTTCCGGCATCATGTATCGCACAATCGTCGAGCACTTACGGCGACACCGGCACTGATACGGTACCGCAAAGGTCAAGTGGCTTCGGGTACGAGCTAATCCGCAATCAGCTCGAGGAAATGCAAGATAGCATCACACAGCTGCAGCAAAC GGCGGAGAGCCGTAGTGCGTGTGCCGGACTGGAAGCCAACATTGCCACCATACTGAGGC GGCTCGAAACGATCGAAAACGGACTGAACGCAATGCCTCAATCACCAGCCATTTCCATGCCGGCACGTCCGATATA CGATCAAGCACCGCTAACTCCAGCATACAGTGCACGGCCGTCAAGAGGCCGTACCATCGATATCGACAGGATGAAAGCAGAGGCAGACGA TA TG TT TG AAGAACAGCGATCGCGTGCCAGAGCTCGAGCG ATGGCTCATC AACAAAGGGAACA GTCCGTGTTCGA CCGCGTTTA CGAC TCG TGTGAC GATGTG CCGAGCTCGGGCA CGT GG A AGATTCGACAAGGTACACAGATAGCAAACGTACACTGTATCAAGTTCTAAACGTCGGGCTTAATC ]
[+] EMBL BM642786 [ ccgGCGAAAGGACGATTGTCAGGGCGGTGCATTGTGTCAATAGCCGCCGTACTGCTTCTTCCGG CATGTATCGCACAATCGTCGAGCACTTACGGCGACACCGGCACTGATACGGTGCCGCAAAGGTCAAGTGGCTTCGGGTACGAGCTAATCCGCAATCAGCTCGAGGAAATGCAAGATAGCATCACACAGCTGCAGCAAAC GGCGGAGAGTCGTAGTGCGTGTGCCGGACTGGAAGCCAACATTGCCACCATACTGAGGC GGCTCGAAACGATCGAAAACGGACTGAATGCAATGCCTCAATCACCAGCCATTTCCATGCCAGCACGTCCGATATA CGATCAAGCACCGCTAACTCCAGCATATAGTGCACGGCCGTCAAGAGGCCGTACCATCGATATCGACAGGATGAAAGCAGAGGCAGATGA TA TG TT TG AAGAACAGCGATCGCGTGCCAGAGCTCGAGCG ATGGCTCATC AACAAAGGGAACA GTCCGTGTTCGA CCGCGTTTA CGAC TCGATGTGAC GATGTG CCGAGCTCGGGCA CGT GG A GAATTCGACAAGGTACACAGATAGCAAACGTACACTGTATCAAGTTCTAAACGTCGGCCTTAATCCATT ATGTCTATAAATAAAATATGAGATATAATGATC]
consensusID : consensus_8051#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 659 fasta sequence
[GAATCGGCCGAGGATATGGCAGCGAAAGGACGATTGTCAGGGCGGTGCATTGTGTCATAGCCGCGTACTGTCCTTCCGGCATGTATCTGCACAATCGTCGAGCACTTACGGCGACACTGATACGGTGCCGCAAAGGTCAAGTGGCTTCGGGTACGAGCTAATCCGAAATCAGCTCGAGGAAATGCAAGATAGCATCACACAGCTGCAGCAAACGGCGGAGAGCCGTAGTGCGTGTGCCGGACTGGAAGCCAACATTGCCACCATACTGAGGCGGCTCGAAACGATCGAAAACGGACTGAATGCAATGCCTCAATCACCAGCCATTTCCATGCCAGCACGTCCGATATACGATCAAGCACCGCTAACTCCAGCATACAGTGCACGGCCGTCAAGAGGCCGTACCATCGATATCGACAGGATGAAAGCAGAGGCAGACGATATGTTTGAAGAACAGCGATCGCGTGCCAGAGCTCGAGCGATGGCTCATCAACAAAGGGAACAGTCCGTGTTCGACCGAGTTTACGACTCGTGTGACGATGTGCCGACCTCGGGCACGTGGAAGATTCGACAAGGTACGCAGATATCAAACGTACACTGTATCAAGTTCTAAACGTCGGCTTAATCCATTCATTCTACAAATAAAAAATGGGAAATAATAA]
[+] EMBL AL931263 [GAATCGGCCGAGGATATGGCAGCGAAAGGACGATTGTCAGGGCGGTGCATTGTGTCATAGCCGCGTACTGTCCTTCCGGCATGTATCTGCACAATCGTCGAGCACTTACGGCGACACTGATACGGTGCCGCAAAGGTCAAGTGGCTTCGGGTACGAGCTAATCCGAAATCAGCTCGAGGAAATGCAAGATAGCATCACACAGCTGCAGCAAACGGCGGAGAGCCGTAGTGCGTGTGCCGGACTGGAAGCCAACATTGCCACCATACTGAGGCGGCTCGAAACGATCGAAAACGGACTGAATGCAATGCCTCAATCACCAGCCATTTCCATGCCAGCACGTCCGATATACGATCAAGCACCGCTAACTCCAGCATACAGTGCACGGCCGTCAAGAGGCCGTACCATCGATATCGACAGGATGAAAGCAGAGGCAGACGATATGTTTGAAGAACAGCGATCGCGTGCCAGAGCTCGAGCGATGGCTCATCAACAAAGGGAACAGTCCGTGTTCGACCGAGTTTACGACTCGTGTGACGATGTGCCGACCTCGGGCACGTGGAAGATTCGACAAGGTACGCAGATATCAAACGTACACTGTATCAAGTTCTAAACGTCGGCTTAATCCATTCATTCTACAAATAAAAAATGGGAAATAATAA]
consensusID : consensus_8051#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 380 fasta sequence
[CCGCCCACGCGTCCGGAACGCAATGCCTCAATCACCAGCCATTTCCATGCCGGCACGTCCGATATACGATCAAGCACCGCTAACTCCAGCATACAGTGCACGGCCGTCAAGAGGCCGTACCATCGATATCGACAGGATGAAAGCAGAGGCAGACGATATGTTTGAAGAACAGCGATCGCGTGCCAGAGCTCGAGCGATGGCTCATCAACAAAGGGAACAGTCCGTGTTCGACCGCGTTTACGACTCGTGTGACGATGTGCCGAGCTCGGGCACGTGGAAGATTCGACAAGGTACACAGATAGCAAACGTACACTGTATCAAGTTCTAAACGTCGGCCTTAATCCATTCATTCTACAAATAAAAGATGGGAAATAATGATC]
[+] EMBL BM586110 [CCGCCCACGCGTCCGGAACGCAATGCCTCAATCACCAGCCATTTCCATGCCGGCACGTCCGATATACGATCAAGCACCGCTAACTCCAGCATACAGTGCACGGCCGTCAAGAGGCCGTACCATCGATATCGACAGGATGAAAGCAGAGGCAGACGATATGTTTGAAGAACAGCGATCGCGTGCCAGAGCTCGAGCGATGGCTCATCAACAAAGGGAACAGTCCGTGTTCGACCGCGTTTACGACTCGTGTGACGATGTGCCGAGCTCGGGCACGTGGAAGATTCGACAAGGTACACAGATAGCAAACGTACACTGTATCAAGTTCTAAACGTCGGCCTTAATCCATTCATTCTACAAATAAAAGATGGGAAATAATGATC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8051#0 CCGCCCCCGCGATCATGGCAGCGAAAGGACGATTGTCTGGGCGGTGCATTGTGTCAATAG 60
consensus_8051#2 ------------------------------------------------------------
consensus_8051#1 ----------GAATCGGCCGAGGATATGGCAGCGAAAGGACGATTGTCAGGGCGGTGCAT 50
consensus_8051#0 CCGCCGTACTGCTGCTTCCGGCATCATGTATCGCACAATCGTCGAGCACTTACGGCGACA 120
consensus_8051#2 ------------------------------------------------------------
consensus_8051#1 TGTGTCATAGCCGCGTACTGTCCTTCCGGCATGTATCTGCACAATCGTCGAGCACTTACG 110
consensus_8051#0 CCGGCACTGATACGGTACCGCAAAGGTCAAGTGGCTTCGGGTACGAGCTAATCCGCAATC 180
consensus_8051#2 ------------------------------------------------------------
consensus_8051#1 GCGACACTGATACGGTGCCGCAAAGGTCAAGTGGCTTCGGGTACGAGCTAATCCGAAATC 170
consensus_8051#0 AGCTCGAGGAAATGCAAGATAGCATCACACAGCTGCAGCAAACGGCGGAGAGCCGTAGTG 240
consensus_8051#2 ------------------------------------------------------------
consensus_8051#1 AGCTCGAGGAAATGCAAGATAGCATCACACAGCTGCAGCAAACGGCGGAGAGCCGTAGTG 230
consensus_8051#0 CGTGTGCCGGACTGGAAGCCAACATTGCCACCATACTGAGGCGGCTCGAAACGATCGAAA 300
consensus_8051#2 --------------------------------------------------CCGCCC--AC 8
consensus_8051#1 CGTGTGCCGGACTGGAAGCCAACATTGCCACCATACTGAGGCGGCTCGAAACGATCGAAA 290
** * *
consensus_8051#0 ACGGACTGAACGCAATGCCTCAATCACCAGCCATTTCCATGCCGGCACGTCCGATATACG 360
consensus_8051#2 GCGTCCGGAACGCAATGCCTCAATCACCAGCCATTTCCATGCCGGCACGTCCGATATACG 68
consensus_8051#1 ACGGACTGAATGCAATGCCTCAATCACCAGCCATTTCCATGCCAGCACGTCCGATATACG 350
** * *** ******************************** ****************
consensus_8051#0 ATCAAGCACCGCTAACTCCAGCATACAGTGCACGGCCGTCAAGAGGCCGTACCATCGATA 420
consensus_8051#2 ATCAAGCACCGCTAACTCCAGCATACAGTGCACGGCCGTCAAGAGGCCGTACCATCGATA 128
consensus_8051#1 ATCAAGCACCGCTAACTCCAGCATACAGTGCACGGCCGTCAAGAGGCCGTACCATCGATA 410
************************************************************
consensus_8051#0 TCGACAGGATGAAAGCAGAGGCAGACGATATGTTTGAAGAACAGCGATCGCGTGCCAGAG 480
consensus_8051#2 TCGACAGGATGAAAGCAGAGGCAGACGATATGTTTGAAGAACAGCGATCGCGTGCCAGAG 188
consensus_8051#1 TCGACAGGATGAAAGCAGAGGCAGACGATATGTTTGAAGAACAGCGATCGCGTGCCAGAG 470
************************************************************
consensus_8051#0 CTCGAGCGATGGCTCATCAACAAAGGGAACAGTCCGTGTTCGACCGCGTTTACGACTCGT 540
consensus_8051#2 CTCGAGCGATGGCTCATCAACAAAGGGAACAGTCCGTGTTCGACCGCGTTTACGACTCGT 248
consensus_8051#1 CTCGAGCGATGGCTCATCAACAAAGGGAACAGTCCGTGTTCGACCGAGTTTACGACTCGT 530
********************************************** *************
consensus_8051#0 GTGACGATGTGCCGAGCTCGGGCACGTGGAAGATTCGACAAGGTACACAGATAGCAAACG 600
consensus_8051#2 GTGACGATGTGCCGAGCTCGGGCACGTGGAAGATTCGACAAGGTACACAGATAGCAAACG 308
consensus_8051#1 GTGACGATGTGCCGACCTCGGGCACGTGGAAGATTCGACAAGGTACGCAGATATCAAACG 590
*************** ****************************** ****** ******
consensus_8051#0 TACACTGTATCAAGTTCTAAACGTCGGCCTTAATCCATTCATTCTACAAATAAAAGATGG 660
consensus_8051#2 TACACTGTATCAAGTTCTAAACGTCGGCCTTAATCCATTCATTCTACAAATAAAAGATGG 368
consensus_8051#1 TACACTGTATCAAGTTCTAAACGTCGGC-TTAATCCATTCATTCTACAAATAAAAAATGG 649
**************************** ************************** ****
consensus_8051#0 GAAATAATGATC 672
consensus_8051#2 GAAATAATGATC 380
consensus_8051#1 GAAATAATAA-- 659
******** *
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||