cluster # 8109

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Anopheles gambiae
cluster # 8109 cluster # 8109 Sequences # 9 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8109#0 length = 1394 sequences # 5
consensus_8109#1 length = 1174 sequences # 2

consensus_8109#2 length = 749 sequences # 1
consensus_8109#3 length = 334 sequences # 1

consensusID : consensus_8109#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 1394
fasta sequence

                              [CCGCTTTTGTTAAATTAAAAGATCTTTCTACAAGGTGTATAAGAGCGATAAAAGTCATAATATTTACCTCTATTTAACCTAAAACAGGATCGTTTATTAGGCAGACTTTAGTTAACGGCGTTAGATGAAATATTTCAATTGTGAAAGCTTTCCCAAAAAGCTTTCAGACGAATGAATGAACGTTTACACGGAGCGAAACCATTTTTCTATTGTTCTTTTCGTATTATTTTTAGCAAATGTTTCTCAAAATCTCATTCTGGACAGTTTAGTACAAGAAAGATAGCCCAAAAATGTAGTGCTTACTTACAAAATTATAAAACAATGCTTCTTTTGGCTGCTTATTAACAATTTTGGCTTCACTTGGCATAAAGAGTACAAAAACATTTCAGCTAACGATGCAATGCGCTCTCTTCGAACGAGCATGCTGCGTAACTACGTTCAACTCATGCTAACTCTTTTCCGACCACTTTGCTCCGGTTTCTCACTTGATGCTGCCACTACTTTACAGAGGAAATAATGGCCGAAACGGGCAACACGAAGCTGCTCATCAAGCACGTCGACATCAGCTCGCTCGCCTCCGTCCGCGCGTTCGCGAAGGAGATCGTCGCGACCGAGCCCGTGATCGACGTGCTGATACACAATGCCGGTGTGGCGCAGGGCTTCAACAACAAGGTCACGTCGGACGGGCTGGAGTTTACGATGGCGACCAACTACTACGGACCGTTCTTGCTGACCCATCTGCTGATAGATTTGCTCAAGCGGTCCGACCAGGGCCGCATCGTGATCGTGTCGTCCAAGCTGTACCAGTTCGCTTCGCTCAATCCGGCCAACATCAACAGCATCAACCCGATCAACTACTTCTCGCTCTTCCCCACCCACCTGTACAATCTGTCCAAGTTTGCGGAGATTATGTTCACGCAGGAGCTGGCCCGCCGGCTGCGCGGTACGAAGGTGACGGCCAACTGCCTACATCCGGGCGTAATCGATACCGGCATCTGGCGCAACGTGCCGTTCCCGATCAGCATACTGTTCAAGCCGATCCAGATGTGCTTCCGCACGCCGGAGGAAGGGGCGCGAACGAGCATCTATCTGTCGGTGTCGCCGGACGTGGAGCAGATCAGCGGCCAGTACTTCCGGGGCTGCAGGGTGCACCAGCTGAACCGGCGTGTGCAGCACGTCGCCCGGCAGCACGATCTGTGGGAAGCGTCCAAGAAGCTGGTGAAGCTGACGGCCGACGATCCACAGATTTAGGTGGCGATTGGGATGAAGTAGGCAGTTGACTGTTCGGTCAACACAAGTTCGAATGTACGTTTTTAGGAAGTAAGGTTTATAATAAAACTTTGGCGTACATATTGTGTGCCAGTGCGTGATGGTATTTCCCAGTGAAAAAAAAA]

[+] EMBL BM584964             [CCGCTTTTGTTAAATTAAAAGATCTTTCTACAAGGTGTATAAGAGCGATAAAAGTCATAATATTTACCTCTATTTAACCTAAAACAGGATCGTTTATTAGGCAGACTTTAGTTAACGGCGTTAGATGAAATATTTCAATTGTGAAAGCTTTCCCAAAAAGCTTTCAGACGAATGAATGAACGTTTACACGGAGCGAAACCATTTTTCTATTGTTCTTTTCGTATTATTTTTAGCAAATGTTTCTCAAAATCTCATTCTGGACAGTTTAGTACAAGAAAGATAGCCCAAAAATGTAGTGCTTACTTACAAAATTATAAAACAATGCTTCTTTTGGCTGCTTATTAACAATTTTGGCTTCACTTGGCATAAAGAGTACAAAAACATTTCAGCTAACGATGCAATGCGCTCTCTTCGAACGAGCATGCTGCGTAACTACGATCAACTCATGCTAACTCTTTTCTGACCACTTTGCTCCGGTTTCTCACTTGATGCTGCCACTACTTTACAGAGGAAATAATGGCCGAAACGGGCAACACGAAGCTGCTCATCAAGCACGTCGACATCAGCTCGCTCGCCTCCGTCCGCGCGTTCGCGAAGGAGATCGTCGCGACCGAGCCCGTGATCGACGTGCTGATACACAATGCCGGTGTGGCGCAAGGCTTCAACAACAAGGTCACGTCGGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL BX609478             [                                                                                                                                                                                                                            GTATTATTTCTAGCAAATGTTTCTAAAAACCACATTCTGGACAGTGTAAAACAGGAAAGATAGCTCAAAAATGTAGTGCTTACTTACAAAATTACAAAACAATGCTTCTTTTGGCTGCTTATTAACAGTTTTAGCTTTAGTTCGCATAAAGATTATATAAACATTTCAGTTAACGATGCAATGCGCTCTCTTCGAACGAGTATGCTGCGTAACTACGTTCAACTCATGCTTACTCTTTTCCGACCACTTTGCTCCGGTTTCTCACTTGATGCTGCCACTACTTTACAGAGGAAATAATGGCCGAAACGGGCAACACGAAGCTGCTCATCAAGCACGTCGACATCAGCTCGCTCGCCTCCGTCCGCGCGTTCGCGAAGGAGATCGTCGCGACCGAGCCCGTGATCGATGTGCTGATACACAATGCCGGTGTGGCGCAGGGCTTCAACAACAAGGTCACGTCGGACGGGCTGGAGTTTACGATGGCGACCAACTACTACGGACCGTTCTTGCTGACCCATCTGTTGATAGATTTGCTCAAGCGGTCC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL CNS09KQJ             [                                                                                                                                                                                                                                                                                                                                                                                                                                                cgACGTTCAACTCATGCTAACTCTTTTCCGACCACTTTGCTCCGATTTCTCACTTGATGCTGCCACTACTTTACAGAGGAAATAATGGCTGAAACGGGCAACACGAAGCTGCTCATCAAGCACGTCGACATCAGCTCGCTCGCCTCCGTCCGCGCGTTCGCGAAGGAGATCGTCGCGACCGAGCCCGTGATCGACGTGCTGATACACAATGCCGGTGTGGCGCAGGGCTTCAACAACAAGGTCACCTCGGACGGGCTGGAGTTTACGATGGCGACCAACTACTACGGACCGTTCTTGCTGACCCATCTGCTGATAGATTTGCTCAAGCGGTCCGACCAGGGCCGCATCGTGATCGTGTCGTCCAAGCTGTACCAGTTCGCTTCGCTCAATCCGGCCAACATCAACAGCATCAACCCGATCAACTACTTCTCGCTCTTCCCCACCCACCTGTACAATCTGTCCAAGTTTGCGGAGATTATGTTCACGCAGGAGCTGGCCCGCCGGCTGCGCGGTACGAAGGTGACGGCCAACTGCCTACATCCGGGCGTAATCGATACCGGCATCTGGCGCAACGTGCCGTTCCCGATCAGCATACTGTTCAAGCCGATCCAGATGTGCTTCCGCACGCCGGAGGAAGGGGCGCGAACGAGCATCTATCTGTCGGTGTCGCCGGACGTGGAGCAGATCAGCGGCCAGTACTTCCGGGGCTGCAGGGTGCACCAGCTGAACCGGCGTGTGCAGCACGTCGCCCGGCAGCACGATCTGTGGGAAGCGTCCAAGAAGCTGGTGAAGCTGACGGCCGACGATCCACAGATTTAGGTGGCGATTGGGATGAAGTAGGCAGTTGACTGTTCGGTCAACACAAGTTCGAATGTACGTTTTTAGGAAGTAAGGTTTATAATAAAACTTTGGCGTACATATTGTGTGCCAGTGCGTGATGGTATTTCCCAGTGAAAAAAAAA]
[-] EMBL CNS09KQK             [                                                                                                                                                                                                                                                                                                                                                                                                                                                         ACTCATGCTAACTCTTTTCCGACCACTTTGCTCCGATTTCTCACTTGATGCTGCCACTACTTTACAGAGGAAATAATGGCTGAAACGGGCAACACGAAGCTGCTCATAAAGCACGTCGACATCAGCTCGCTCGCCTCCGTCCG GCGTTCGCGAAGGAGATCGTCGCGACCGAGCCCGTGATCGACGTGCTGATACACAATGCCGGTGTGGCGCAGGGCTTCAACAACAAGGTCACCTCGGACGGGCTGGAGTTTACGATGGCGACCAACTACTACGGACCGTTCTTGCTGACCCATCTGCTGATAGATTTGCTCAAGCGGTCCGACCAGGGCCGCATCGTGATCGTGTCGTCCAAGCTGTACCAGGTC CTTCGCTCAATCCGGCCAACATCAACAGCATCAACCCGATCAACTACTTTTCGCTCTTCCCCACCCACCTGTACAATCTGTCCAAGTTTGCGGAGATTATGTTCACGCAGGAGCTGGCCCGCC GCTGCGCGGTACGAAGGTGACGGCCAACTGCCTACATCCGGGCGTAATCGATACCGGCATCTGGCGCAACGTGCCGTTCCCGATCAGCATACTGTTCAAGCCGATCCAGAT TGCTTCCGCACGCCGGAGGAAGGGGCGCGAACGAGCATCTATCTGTCGGTGTCGCCGGACGTGGAGCAGATCAGCGGCCAGTACTTCCGGGGCTGCAGGGTGCACCAGCTGAACCGGCGTGTGCAGCACGTCGCCCGGCAGCACGATCTGTGGGAAGCGTCCAAGAAGCTGGTGAAGCTGACGGCCGACGATCCACAGATTTAGGTGGCGATTGGGATGAAGTAGGCAGTTGACTGTTCGGTCAACACAAGTTCGAATGTACGTTTTTAGGAAGTAAGGTTTATAATAAAACTTTGGCGTACATATTGTGTGCCAGTGCGTGATGGTATTTCCC             ]
[+] EMBL BX616038             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         CTGACCCATCTGCTGATAGATTTGCTCAAGCGGTCCGACCAGGGCCGCATCGTGATCGTGTCGTCCAAGCTGTACCAGTTCGCTTCGCTCAATCCGGCCAACATCAACAGCATCAACCCGATCAACTACTTCTCGCTCTTCCCCATCCACCTGTACAATCTGTCCAAGTTTGCGGAGATTATGTTCACGCAGGAGCTGGCCCGCCGGCTGCGCGGTACGAAGGTGACGGCCAACTGCCTACATCCGGGCGTAATCGATACCGGCATCTGGCGCAACGTGCCGTTCCCGATCAGCATACTGTTCAAGCCGATCCAGATGTGCTTCCGCACGCCGGAGGAAGGGGCGCGAACGAGCATCTATCTGTCGGTGTCGCCGGACGTGGAGCAGATCAGCGGCCAGTACTTCCGGGGCTGCAGGGTGCACCAGCTGAACCGGCGTGTGCAGCACGTCGCCCGGCAGCACGATCTGTGGGAAGCGTCCAAGAAGCTGGTGAAGCTGACGGCCGACGATCCACAGATTTAGGTGGCGATTGGGATGAAGCAGGCAGTTGGCTGTCCGGTCAACAGAGGTTCGAATGTACGTTTTTAGGAAGTAAGGTTTATAATAAAACTTTGGCGTACATATTGTGTGCCAGTGCGTGATGGTATT                 ]




>consensus_8109#0
CCGCTTTTGTTAAATTAAAAGATCTTTCTACAAGGTGTATAAGAGCGATAAAAGTCATAA
TATTTACCTCTATTTAACCTAAAACAGGATCGTTTATTAGGCAGACTTTAGTTAACGGCG
TTAGATGAAATATTTCAATTGTGAAAGCTTTCCCAAAAAGCTTTCAGACGAATGAATGAA
CGTTTACACGGAGCGAAACCATTTTTCTATTGTTCTTTTCGTATTATTTTTAGCAAATGT
TTCTCAAAATCTCATTCTGGACAGTTTAGTACAAGAAAGATAGCCCAAAAATGTAGTGCT
TACTTACAAAATTATAAAACAATGCTTCTTTTGGCTGCTTATTAACAATTTTGGCTTCAC
TTGGCATAAAGAGTACAAAAACATTTCAGCTAACGATGCAATGCGCTCTCTTCGAACGAG
CATGCTGCGTAACTACGTTCAACTCATGCTAACTCTTTTCCGACCACTTTGCTCCGGTTT
CTCACTTGATGCTGCCACTACTTTACAGAGGAAATAATGGCCGAAACGGGCAACACGAAG
CTGCTCATCAAGCACGTCGACATCAGCTCGCTCGCCTCCGTCCGCGCGTTCGCGAAGGAG
ATCGTCGCGACCGAGCCCGTGATCGACGTGCTGATACACAATGCCGGTGTGGCGCAGGGC
TTCAACAACAAGGTCACGTCGGACGGGCTGGAGTTTACGATGGCGACCAACTACTACGGA
CCGTTCTTGCTGACCCATCTGCTGATAGATTTGCTCAAGCGGTCCGACCAGGGCCGCATC
GTGATCGTGTCGTCCAAGCTGTACCAGTTCGCTTCGCTCAATCCGGCCAACATCAACAGC
ATCAACCCGATCAACTACTTCTCGCTCTTCCCCACCCACCTGTACAATCTGTCCAAGTTT
GCGGAGATTATGTTCACGCAGGAGCTGGCCCGCCGGCTGCGCGGTACGAAGGTGACGGCC
AACTGCCTACATCCGGGCGTAATCGATACCGGCATCTGGCGCAACGTGCCGTTCCCGATC
AGCATACTGTTCAAGCCGATCCAGATGTGCTTCCGCACGCCGGAGGAAGGGGCGCGAACG
AGCATCTATCTGTCGGTGTCGCCGGACGTGGAGCAGATCAGCGGCCAGTACTTCCGGGGC
TGCAGGGTGCACCAGCTGAACCGGCGTGTGCAGCACGTCGCCCGGCAGCACGATCTGTGG
GAAGCGTCCAAGAAGCTGGTGAAGCTGACGGCCGACGATCCACAGATTTAGGTGGCGATT
GGGATGAAGTAGGCAGTTGACTGTTCGGTCAACACAAGTTCGAATGTACGTTTTTAGGAA
GTAAGGTTTATAATAAAACTTTGGCGTACATATTGTGTGCCAGTGCGTGATGGTATTTCC
CAGTGAAAAAAAAA

consensusID : consensus_8109#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1174
fasta sequence

                              [CCGCGTCGAGTGTGCCGGAAGACGGACCGCTCCGAACAAGACAAGTGTCTTCTTGCCCCTTTTGTTTTTGTTTTTGAGTCATCCAAGAGACAATACTGTTATTCTGTCCCACCGCGAACCTTTGGTGTCCGTTGGCGTTGGTCGTTCACGACAGGTTGAAAGTTGCCAACTCGAAAGCGTGCAAGCTCGTGGGTGTGCTGTGGTGCATCCATTGTGACGTTGAGAAAGCGCAAACGGGGGAAAAAACCCGAGTGTGTAATCAGTGCCGGTGGTGCAGCTAGGGCGCGCACACCCAGATCGTGTAACTGCACAGGTCAAAGCTCGCTACACTTTTCCACTGTACTGTAGAAAACCCAAAAACAACACACACACAAAAAACGAACATGTCGCCACTCGGGTTCAACGATCCGCTGTCGGCGGTGGCATCCGTAGTCACGGGAGTTGCGATCGTACTGTCACTAATCAAATACTACCTCTACCTCACCTGCGGGCACTTTACCTCATCTCGAAAGATGGAGGGTAAGACGGTCATCATTACCGGCGCAAACTCGGGCATTGGCAAGGAAACTGCCCGCGATTTGGCTAAACGAGGCGCCCGCGTCATTATGGCGTGCCGGAACATGGAGACGGCCAAGCAGGCGCAAGAGGAAATAATGGCCGAAACGGGCAACACGAAGCTGCTCATCAAGCACGTCGACATCAGCTCGCTCGCCTCCGTCCGCGCGTTCGCGAAGGAGATCGTCGCGACCGAGCCCGTGATCGACGTGCTGATACACAATGCCGGTGTGGCGCAGGGCTTCAACAACAAGGTCACGTCGGACGGGCTGGAGTTTACGATGGCGACCAACTACTACGGGCCGTTCTTGCTGACCCATCTGCTGATAGATTTGCTCAAGCGGTCCGACCAGGGCCGCATCGTGATCGTGTCGTCCAAGCTGTACCAGTTCGCTTCGCTCAATCCGGCCAACATTAACAGCATCAACCCGATCAACTACTTCTCGCTCTTCCCCATCCACCTGTACAATCTGTCCAAGTTTGCCGAGGTTATGTTCACGCAGGAGCTGGCCCGCCGGCTGCGCGGTACGAAGGTGACGGCCAACTGCCTACATCCGGGCGTAATCGATACCGGCATCTGGCGCAACGTGCCGTTNCCGATCAGCATACTGNTCAAGCC]

[+] EMBL BM623211             [CCGCGTCGAGTGTGCCGGAAGACGGACCGCTCCGAACAAGACAAGTGTCTTCTTGCCCCTTTTGTTTTTGTTTTTGAGTCATCCAAGAGACAATACTGTTATTCTGTCCCACCGCGAACCTTTGGTGTCCGTTGGCGTTGGTCGTTCACGACAGGTTGAAAGTTGCCAACTCGAAAGCGTGCAAGCTCGTGGGTGTGCTGTGGTGCATCCATTGTGACGTTGAGAAAGCGCAAACGGGGGAAAAAACCCGAGTGTGTAATCAGTGCCGGTGGTGCAGCTAGGGCGCGCACACCCAGATCGTGTAACTGCACAGGTCAAAGCTCGCTACACTTTTCCACTGTACTGTAGAAAACCCAAAAACAACACACACACAAAAAACGAACATGTCGCCACTCGGGTTCAACGATCCGCTGTCGGCGGTGGCATCCGTAGTCACGGGAGTTGCGATCGTACTGTCACTAATCAAATACTACCTCTACCTCA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL BX622006             [                                                                                                                                                                                                                                                                                                                                                                                                            GGTTCAACGATCCGCTGTCGGCGGTGGCATCCGTAGTCACGGGAGTTGCGATCGTACTGTCACTAATCAAATACTACCTCTACCTCACCTGCGGGCACTTTACCTCATCTCGAAAGATGGAGGGTAAGACGGTCATCATTACCGGCGCAAACTCGGGCATTGGCAAGGAAACTGCCCGCGATTTGGCTAAACGAGGCGCCCGCGTCATTATGGCGTGCCGGAACATGGAGACGGCCAAGCAGGCGCAAGAGGAAATAATGGCCGAAACGGGCAACACGAAGCTGCTCATCAAGCACGTCGACATCAGCTCGCTCGCCTCCGTCCGCGCGTTCGCGAAGGAGATCGTCGCGACCGAGCCCGTGATCGACGTGCTGATACACAATGCCGGTGTGGCGCAGGGCTTCAACAACAAGGTCACGTCGGACGGGCTGGAGTTTACGATGGCGACCAACTACTACGGGCCGTTCTTGCTGACCCATCTGCTGATAGATTTGCTCAAGCGGTCCGACCAGGGCCGCATCGTGATCGTGTCGTCCAAGCTGTACCAGTTCGCTTCGCTCAATCCGGCCAACATTAACAGCATCAACCCGATCAACTACTTCTCGCTCTTCCCCATCCACCTGTACAATCTGTCCAAGTTTGCCGAGGTTATGTTCACGCAGGAGCTGGCCCGCCGGCTGCGCGGTACGAAGGTGACGGCCAACTGCCTACATCCGGGCGTAATCGATACCGGCATCTGGCGCAACGTGCCGTTNCCGATCAGCATACTGNTCAAGCC]




>consensus_8109#1
CCGCGTCGAGTGTGCCGGAAGACGGACCGCTCCGAACAAGACAAGTGTCTTCTTGCCCCT
TTTGTTTTTGTTTTTGAGTCATCCAAGAGACAATACTGTTATTCTGTCCCACCGCGAACC
TTTGGTGTCCGTTGGCGTTGGTCGTTCACGACAGGTTGAAAGTTGCCAACTCGAAAGCGT
GCAAGCTCGTGGGTGTGCTGTGGTGCATCCATTGTGACGTTGAGAAAGCGCAAACGGGGG
AAAAAACCCGAGTGTGTAATCAGTGCCGGTGGTGCAGCTAGGGCGCGCACACCCAGATCG
TGTAACTGCACAGGTCAAAGCTCGCTACACTTTTCCACTGTACTGTAGAAAACCCAAAAA
CAACACACACACAAAAAACGAACATGTCGCCACTCGGGTTCAACGATCCGCTGTCGGCGG
TGGCATCCGTAGTCACGGGAGTTGCGATCGTACTGTCACTAATCAAATACTACCTCTACC
TCACCTGCGGGCACTTTACCTCATCTCGAAAGATGGAGGGTAAGACGGTCATCATTACCG
GCGCAAACTCGGGCATTGGCAAGGAAACTGCCCGCGATTTGGCTAAACGAGGCGCCCGCG
TCATTATGGCGTGCCGGAACATGGAGACGGCCAAGCAGGCGCAAGAGGAAATAATGGCCG
AAACGGGCAACACGAAGCTGCTCATCAAGCACGTCGACATCAGCTCGCTCGCCTCCGTCC
GCGCGTTCGCGAAGGAGATCGTCGCGACCGAGCCCGTGATCGACGTGCTGATACACAATG
CCGGTGTGGCGCAGGGCTTCAACAACAAGGTCACGTCGGACGGGCTGGAGTTTACGATGG
CGACCAACTACTACGGGCCGTTCTTGCTGACCCATCTGCTGATAGATTTGCTCAAGCGGT
CCGACCAGGGCCGCATCGTGATCGTGTCGTCCAAGCTGTACCAGTTCGCTTCGCTCAATC
CGGCCAACATTAACAGCATCAACCCGATCAACTACTTCTCGCTCTTCCCCATCCACCTGT
ACAATCTGTCCAAGTTTGCCGAGGTTATGTTCACGCAGGAGCTGGCCCGCCGGCTGCGCG
GTACGAAGGTGACGGCCAACTGCCTACATCCGGGCGTAATCGATACCGGCATCTGGCGCA
ACGTGCCGTTNCCGATCAGCATACTGNTCAAGCC

consensusID : consensus_8109#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 749
fasta sequence

                              [NCAAGNGTGAGCTTCAGCAGAATGCAGAGGTAATGTGCGGAAGACGGACGCTCCGAACAGACAAGTGTCTTCTTGCCCCTATTTGTTTTTGTTGGGTGAGTCATCCAAGAGACAATACTGTTATTCTGTCGCCACCGCGAACCTTTGGTGTCCGTTGGCGTTGGTCGTTCACGACAGGTTGAAAGTTGCCAACTCGAAAGCGTGCAAGCTCGTGGGTGTGCTGTGGTGCATCCATTGTGACGTTGAGAAAGCGCAAACGGGGGCAAAAAAACCCGAGTGTGTAATCAGTGCCGGTGGTGCAGATAGGGCGCGCACACCCAGATCGTGTAACTTCACAGGTCAAAGCTCGCTACACTTTTTCCACTGTACTGTAGAAAACCCAAGAAAAAAAACCAAACAAAAAAACCCGAACATGTCGCACTCGGGTTCCAACGATCCGACTGNCGNGGNTGGGCATCCGTATNAATCACGGGAGTATGGCCGAATCGGTAACTGTCCCAACGTAAAGTNCCAAAATTCACGTACCCCTACATTAANCCACTCAANCACCTTGACGAGGNCCNAACTTATCTACCCTTCAATTACTTCGACNCAACGCACTAGNCAGAGGGCAANCCGACCAGCGGACAATTCAAAGTAACACGGNGCAGNCCAACAACTCCGCGNGCAATTTGGAGCCACAGGAAAACCTTGNCCCNCGNATAAACGTTTTAGGGCNCTTAACACGAAGNGNGCCCCGCGGGTCACAT]

[+] EMBL AL697267             [NCAAGNGTGAGCTTCAGCAGAATGCAGAGGTAATGTGCGGAAGACGGACGCTCCGAACAGACAAGTGTCTTCTTGCCCCTATTTGTTTTTGTTGGGTGAGTCATCCAAGAGACAATACTGTTATTCTGTCGCCACCGCGAACCTTTGGTGTCCGTTGGCGTTGGTCGTTCACGACAGGTTGAAAGTTGCCAACTCGAAAGCGTGCAAGCTCGTGGGTGTGCTGTGGTGCATCCATTGTGACGTTGAGAAAGCGCAAACGGGGGCAAAAAAACCCGAGTGTGTAATCAGTGCCGGTGGTGCAGATAGGGCGCGCACACCCAGATCGTGTAACTTCACAGGTCAAAGCTCGCTACACTTTTTCCACTGTACTGTAGAAAACCCAAGAAAAAAAACCAAACAAAAAAACCCGAACATGTCGCACTCGGGTTCCAACGATCCGACTGNCGNGGNTGGGCATCCGTATNAATCACGGGAGTATGGCCGAATCGGTAACTGTCCCAACGTAAAGTNCCAAAATTCACGTACCCCTACATTAANCCACTCAANCACCTTGACGAGGNCCNAACTTATCTACCCTTCAATTACTTCGACNCAACGCACTAGNCAGAGGGCAANCCGACCAGCGGACAATTCAAAGTAACACGGNGCAGNCCAACAACTCCGCGNGCAATTTGGAGCCACAGGAAAACCTTGNCCCNCGNATAAACGTTTTAGGGCNCTTAACACGAAGNGNGCCCCGCGGGTCACAT]




>consensus_8109#2
NCAAGNGTGAGCTTCAGCAGAATGCAGAGGTAATGTGCGGAAGACGGACGCTCCGAACAG
ACAAGTGTCTTCTTGCCCCTATTTGTTTTTGTTGGGTGAGTCATCCAAGAGACAATACTG
TTATTCTGTCGCCACCGCGAACCTTTGGTGTCCGTTGGCGTTGGTCGTTCACGACAGGTT
GAAAGTTGCCAACTCGAAAGCGTGCAAGCTCGTGGGTGTGCTGTGGTGCATCCATTGTGA
CGTTGAGAAAGCGCAAACGGGGGCAAAAAAACCCGAGTGTGTAATCAGTGCCGGTGGTGC
AGATAGGGCGCGCACACCCAGATCGTGTAACTTCACAGGTCAAAGCTCGCTACACTTTTT
CCACTGTACTGTAGAAAACCCAAGAAAAAAAACCAAACAAAAAAACCCGAACATGTCGCA
CTCGGGTTCCAACGATCCGACTGNCGNGGNTGGGCATCCGTATNAATCACGGGAGTATGG
CCGAATCGGTAACTGTCCCAACGTAAAGTNCCAAAATTCACGTACCCCTACATTAANCCA
CTCAANCACCTTGACGAGGNCCNAACTTATCTACCCTTCAATTACTTCGACNCAACGCAC
TAGNCAGAGGGCAANCCGACCAGCGGACAATTCAAAGTAACACGGNGCAGNCCAACAACT
CCGCGNGCAATTTGGAGCCACAGGAAAACCTTGNCCCNCGNATAAACGTTTTAGGGCNCT
TAACACGAAGNGNGCCCCGCGGGTCACAT

consensusID : consensus_8109#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 334
fasta sequence

                              [TTTCATTAATCTTTCAATAATATTTTTAAATATTTGTTGCCCATATACATGTTACTTAATGGACTTTGTTTGAATGAAAAGATCTTTCTAGAAGTTTATAAGAGCGATAAAAGTCATAATGTTGACCTCATTTAACCTAAAAGATGATCGTTTATTAGGCAGACTTTTGTTAACGTGTTTAAATGAAATATTTCAATTGTGAAATCTTTCCCAAAAAGCTTTCAGACGAATGAATGAACGTTTACACGGTGCGAAGTGATTTTTCTATTGCTCTTTTCGTATTATTTTTAGCAAATGTTTCTCAAAACCTCATTCTGGACAGTTTAATACAAGA]

[+] EMBL BX602944             [TTTCATTAATCTTTCAATAATATTTTTAAATATTTGTTGCCCATATACATGTTACTTAATGGACTTTGTTTGAATGAAAAGATCTTTCTAGAAGTTTATAAGAGCGATAAAAGTCATAATGTTGACCTCATTTAACCTAAAAGATGATCGTTTATTAGGCAGACTTTTGTTAACGTGTTTAAATGAAATATTTCAATTGTGAAATCTTTCCCAAAAAGCTTTCAGACGAATGAATGAACGTTTACACGGTGCGAAGTGATTTTTCTATTGCTCTTTTCGTATTATTTTTAGCAAATGTTTCTCAAAACCTCATTCTGGACAGTTTAATACAAGA]




>consensus_8109#3
TTTCATTAATCTTTCAATAATATTTTTAAATATTTGTTGCCCATATACATGTTACTTAAT
GGACTTTGTTTGAATGAAAAGATCTTTCTAGAAGTTTATAAGAGCGATAAAAGTCATAAT
GTTGACCTCATTTAACCTAAAAGATGATCGTTTATTAGGCAGACTTTTGTTAACGTGTTT
AAATGAAATATTTCAATTGTGAAATCTTTCCCAAAAAGCTTTCAGACGAATGAATGAACG
TTTACACGGTGCGAAGTGATTTTTCTATTGCTCTTTTCGTATTATTTTTAGCAAATGTTT
CTCAAAACCTCATTCTGGACAGTTTAATACAAGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8109#0      ------------------------------------------------------------
consensus_8109#3      ------------------------------------------------------------
consensus_8109#1      ---------------------CCGCGTCGAGTGTGC-CGGAAGACGGACCGCTCCGAACA 38
consensus_8109#2      NCAAGNGTGAGCTTCAGCAGAATGCAGAGGTAATGTGCGGAAGACGGAC-GCTCCGAACA 59
                                                                                  

consensus_8109#0      ------------------------------------------------------------
consensus_8109#3      ----------TTTCATTAATCT-TTCAATAATATTTTTAAATATTTGTTGCCCATATACA 49
consensus_8109#1      AGACAAGTGTCTTCTTGCCCCT-TTTGTTTTTGTTTT-TGAGTCATCCAAGAGACAATAC 96
consensus_8109#2      -GACAAGTGTCTTCTTGCCCCTATTTGTTTTTGTTGGGTGAGTCATCCAAGAGACAATAC 118
                                                                                  

consensus_8109#0      -----------CCGCTTTTGTTAAATTAAAAGATCTTTC---TACAAGGTGTATAAGAGC 46
consensus_8109#3      TGTTACTTAATGGACTTTGTTTGAATGAAAAGATCTTTC---TA-GAAGTTTATAAGAGC 105
consensus_8109#1      TGTTATTCTGTC-CCACCGCGAACCTTTGGTGTCCGTTGGCGTTGGTCGTTCACGACAG- 154
consensus_8109#2      TGTTATTCTGTCGCCACCGCGAACCTTTGGTGTCCGTTGGCGTTGGTCGTTCACGACAG- 177
                                    *          *     *  * **    *     **  *  * ** 

consensus_8109#0      GATAAAAGTCATAATATTTACCTCTATTTAACCTAAAACAGG----ATCGTTTATTAG-- 100
consensus_8109#3      GATAAAAGTCATAATGTTGACCTC-ATTTAACCTAAAAGATG----ATCGTTTATTAG-- 158
consensus_8109#1      GTTGAAAGTTGCCAACTCGAAAGC-GTGCAAGCTCGTGGGTGTGCTGTGGTGCATCCATT 213
consensus_8109#2      GTTGAAAGTTGCCAACTCGAAAGC-GTGCAAGCTCGTGGGTGTGCTGTGGTGCATCCATT 236
                      * * *****    *  *  *   *  *  ** **       *     * **  **     

consensus_8109#0      GCAGACTTTAGTTAACGGCGTTAGATG--AAATATTTCAATTGTGAAAGCTTTCCCAA-- 156
consensus_8109#3      GCAGACTTTTGTTAACGTGTTTAAATG--AAATATTTCAATTGTGAAATCTTTCCCAA-- 214
consensus_8109#1      GTGACGTTGAGAAAGCGCAAACGGGGG--AAAAAACCCGAGTGTGTAATCAGTGCCGGTG 271
consensus_8109#2      GTGACGTTGAGAAAGCGCAAACGGGGGCAAAAAAACCCGAGTGTGTAATCAGTGCCGGTG 296
                      *     **  *  * **         *  *** *   * * **** ** *  * **    

consensus_8109#0      --------AAAGCTTTCAGACGAATGAATGAACGTTTACACGGAGCGAAA-CCATTTTTC 207
consensus_8109#3      --------AAAGCTTTCAGACGAATGAATGAACGTTTACACGGTGCGAAG-TGATTTTTC 265
consensus_8109#1      GTGCAGCTAGGGCGCGCACACCCA-GATCGTGTAACTGCACAGGTCAAAGCTCGCTACAC 330
consensus_8109#2      GTGCAGATAGGGCGCGCACACCCA-GATCGTGTAACTTCACAGGTCAAAGCTCGCTACAC 355
                              *  **   ** **  * **  *      * *** *  * **      *   *

consensus_8109#0      TATTGTTCTTTT--CGTATTATTTTTAGCAAATGTTTCTCAAAATCTCATTCTGGACAGT 265
consensus_8109#3      TATTGCTCTTTT--CGTATTATTTTTAGCAAATGTTTCTCAAAACCTCATTCTGGACAGT 323
consensus_8109#1      TTTT-CCACTGTACTGTAGAAAACCCAAAAACAACACACACACAAAAAA---CGAACATG 386
consensus_8109#2      TTTTTCCACTGTACTGTAGAAAACCCAAGAAAAAAAACCAAACAAAAAAACCCGAACATG 415
                      * **     * *   ***  *     *  **          * *    *    * ***  

consensus_8109#0      TTAGTACAAGAAAGA---TAGCCCAAAAATGTAGTGCTTACTTACAAAATTATAAAACAA 322
consensus_8109#3      TTAATACAAGA------------------------------------------------- 334
consensus_8109#1      TCGCCACTCGGGTTC-AACGATCCG-CTGTCGGCGGTGG-CATCCGTAGTCACGGGAGTT 443
consensus_8109#2      TCGC-ACTCGGGTTCCAACGATCCGACTGNCGNGGNTGGGCATCCGTATN------AATC 468
                      *    **  *                                                  

consensus_8109#0      TGCTTCTTTTGGCTGCTTATTAACAATTTTGGCTTCACTTGGCATAAAGAGTACAAAAAC 382
consensus_8109#3      ------------------------------------------------------------
consensus_8109#1      GCGATCGTACTGTCACTAATCAAATACTACCTCTACCTCACCTGCGGGCACTTTACCTCA 503
consensus_8109#2      ACGGGAGTATGGCCG--AATCGGTAACTGTCCCAACGTAAAGTNCCAA-AATTCACGT-A 524
                                                                                  

consensus_8109#0      ATTTCAGCTA------ACGATGCAATGCGCTCTCTTCGAACGAGCATGCTGCGT------ 430
consensus_8109#3      ------------------------------------------------------------
consensus_8109#1      TCTCGAAAGATGGAGGGTAAGACGGTCATCATTACCGGCGCAAACTCGGGCATTGGCAAG 563
consensus_8109#2      CCCCTACAT--------TAANCCACTCA--ANCACCTTGACGAGGNCCNAACTT------ 568
                                                                                  

consensus_8109#0      --AACTACGTTCAACTCATGCTAACTC--TTTTCCGACCACTTTGCTCCGGTTTCTCACT 486
consensus_8109#3      ------------------------------------------------------------
consensus_8109#1      GAAACTGCCCGCGATTTGGCTAAACGAGGCGCCCGCGTCATTATGGCGTGCCGGAACATG 623
consensus_8109#2      --ATCTACCCTTCAATTACTTCGACNCAACGCACTAGNCAG-AGGGCAANCCGACCAGCG 625
                                                                                  

consensus_8109#0      TGATGCTGCCACTACTTTACAGAGGAAATAATGGCCGAAACGGGCAACACGAAGCTGCTC 546
consensus_8109#3      ------------------------------------------------------------
consensus_8109#1      GAGACGGCCAAGCAGGCGCAAGAGGAAATAATGGCCGAAACGGGCAACACGAAGCTGCTC 683
consensus_8109#2      GACAATTCAAAGTAA-CACGGNGCAGNCCAACAACTCCG-CGNGCAATTTGGAGCCACAG 683
                                                                                  

consensus_8109#0      ATCAAGCACGTCGACATCAGCTCGCTCGCCTCCGTCCGCGCGTTCGCGAAGGAGATCGTC 606
consensus_8109#3      ------------------------------------------------------------
consensus_8109#1      ATCAAGCACGTCGACATCAGCTCGCTCGCCTCCGTCCGCGCGTTCGCGAAGGAGATCGTC 743
consensus_8109#2      G---AAAACCTTGNCCCNCGNATAAACGTTTTAGGGCNCTTAA-CACGAAGNGNGCC-CC 738
                                                                                  

consensus_8109#0      GCGACCGAGCCCGTGATCGACGTGCTGATACACAATGCCGGTGTGGCGCAGGGCTTCAAC 666
consensus_8109#3      ------------------------------------------------------------
consensus_8109#1      GCGACCGAGCCCGTGATCGACGTGCTGATACACAATGCCGGTGTGGCGCAGGGCTTCAAC 803
consensus_8109#2      GCGGGTCACAT------------------------------------------------- 749
                                                                                  

consensus_8109#0      AACAAGGTCACGTCGGACGGGCTGGAGTTTACGATGGCGACCAACTACTACGGACCGTTC 726
consensus_8109#3      ------------------------------------------------------------
consensus_8109#1      AACAAGGTCACGTCGGACGGGCTGGAGTTTACGATGGCGACCAACTACTACGGGCCGTTC 863
consensus_8109#2      ------------------------------------------------------------
                                                                                  

consensus_8109#0      TTGCTGACCCATCTGCTGATAGATTTGCTCAAGCGGTCCGACCAGGGCCGCATCGTGATC 786
consensus_8109#3      ------------------------------------------------------------
consensus_8109#1      TTGCTGACCCATCTGCTGATAGATTTGCTCAAGCGGTCCGACCAGGGCCGCATCGTGATC 923
consensus_8109#2      ------------------------------------------------------------
                                                                                  

consensus_8109#0      GTGTCGTCCAAGCTGTACCAGTTCGCTTCGCTCAATCCGGCCAACATCAACAGCATCAAC 846
consensus_8109#3      ------------------------------------------------------------
consensus_8109#1      GTGTCGTCCAAGCTGTACCAGTTCGCTTCGCTCAATCCGGCCAACATTAACAGCATCAAC 983
consensus_8109#2      ------------------------------------------------------------
                                                                                  

consensus_8109#0      CCGATCAACTACTTCTCGCTCTTCCCCACCCACCTGTACAATCTGTCCAAGTTTGCGGAG 906
consensus_8109#3      ------------------------------------------------------------
consensus_8109#1      CCGATCAACTACTTCTCGCTCTTCCCCATCCACCTGTACAATCTGTCCAAGTTTGCCGAG 1043
consensus_8109#2      ------------------------------------------------------------
                                                                                  

consensus_8109#0      ATTATGTTCACGCAGGAGCTGGCCCGCCGGCTGCGCGGTACGAAGGTGACGGCCAACTGC 966
consensus_8109#3      ------------------------------------------------------------
consensus_8109#1      GTTATGTTCACGCAGGAGCTGGCCCGCCGGCTGCGCGGTACGAAGGTGACGGCCAACTGC 1103
consensus_8109#2      ------------------------------------------------------------
                                                                                  

consensus_8109#0      CTACATCCGGGCGTAATCGATACCGGCATCTGGCGCAACGTGCCGTTCCCGATCAGCATA 1026
consensus_8109#3      ------------------------------------------------------------
consensus_8109#1      CTACATCCGGGCGTAATCGATACCGGCATCTGGCGCAACGTGCCGTTNCCGATCAGCATA 1163
consensus_8109#2      ------------------------------------------------------------
                                                                                  

consensus_8109#0      CTGTTCAAGCCGATCCAGATGTGCTTCCGCACGCCGGAGGAAGGGGCGCGAACGAGCATC 1086
consensus_8109#3      ------------------------------------------------------------
consensus_8109#1      CTGNTCAAGCC------------------------------------------------- 1174
consensus_8109#2      ------------------------------------------------------------
                                                                                  

consensus_8109#0      TATCTGTCGGTGTCGCCGGACGTGGAGCAGATCAGCGGCCAGTACTTCCGGGGCTGCAGG 1146
consensus_8109#3      ------------------------------------------------------------
consensus_8109#1      ------------------------------------------------------------
consensus_8109#2      ------------------------------------------------------------
                                                                                  

consensus_8109#0      GTGCACCAGCTGAACCGGCGTGTGCAGCACGTCGCCCGGCAGCACGATCTGTGGGAAGCG 1206
consensus_8109#3      ------------------------------------------------------------
consensus_8109#1      ------------------------------------------------------------
consensus_8109#2      ------------------------------------------------------------
                                                                                  

consensus_8109#0      TCCAAGAAGCTGGTGAAGCTGACGGCCGACGATCCACAGATTTAGGTGGCGATTGGGATG 1266
consensus_8109#3      ------------------------------------------------------------
consensus_8109#1      ------------------------------------------------------------
consensus_8109#2      ------------------------------------------------------------
                                                                                  

consensus_8109#0      AAGTAGGCAGTTGACTGTTCGGTCAACACAAGTTCGAATGTACGTTTTTAGGAAGTAAGG 1326
consensus_8109#3      ------------------------------------------------------------
consensus_8109#1      ------------------------------------------------------------
consensus_8109#2      ------------------------------------------------------------
                                                                                  

consensus_8109#0      TTTATAATAAAACTTTGGCGTACATATTGTGTGCCAGTGCGTGATGGTATTTCCCAGTGA 1386
consensus_8109#3      ------------------------------------------------------------
consensus_8109#1      ------------------------------------------------------------
consensus_8109#2      ------------------------------------------------------------
                                                                                  

consensus_8109#0      AAAAAAAA 1394
consensus_8109#3      --------
consensus_8109#1      --------
consensus_8109#2      --------