These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8111#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 791 fasta sequence [CCGGCCCGCAGTCCTAGAGTCCTACGCTCCTAGGAGGTTTCAGCACTCAAAAGAAAGCGACTAGCTCCAAGTGACAGACGTTCGACGTCATTTCCGCCCGCAAAAACAGCGAAAGAAAAAAAAAACAAAACCAACGCACCAAGTGTCCGGGGAAGTGTCCAACCGGAAGCGATCAAAGACAAACAGTGTGTGTGTGTGTGTGCCACAGTGTGTGTTTGCGTGTGTGCAGTGCATTGTTAGAGTGATCTTTGTGAGGCGTCAATCACAATGAAGGCTTTCGTTCTGGGATCTGCCGTGCTGCTGCTGGCTTCGGCCGCGGCTTCCGGCTCGTACCTCGGCGTGGCGCTCTCGTCCCAGTACCAGGCGCACGACGGTATCGGCGGCTACTCGTACGGCTACGCCGAGCCGAACTCGCAGAAGCACGAAACGAAGGATGCGCACGGCATCACGCACGGCGGCTACTCGTACGTCGACGCGAACGGCCACGTGCAGAGCGTGAAGTACACGGCGGACCCGATCCACGGATTCCAGGTGTCGGGCACGAACCTGCCGAAGGGCCCGGCCCCGCACGCCGTCCCGGTGCCGGCCTGGAACGCGTACGCCTA-CGCCCCGGTGGTGCTCGGCCACAACGGTGCCCCGCTCGAG-ACG-CCCGAGGTGCAGGCCGCCAAGGCAGCGCACTTCGCGGGCCATGCCGCCGCCAAGGCCCGCCTGCACAAGCGCTCGCTGTACGCCCCGTGGACGTACGCGGCCGCCGCCCCCGGTCGTCCTCGGCCACAACGGAGTCCCGCTCG] [+] EMBL BM598502 [CCGGCAAACAGTCCTAGAGTCCTACGCTCCTAGGAGGTTTCAGCACTCAAAAGAAAGCGACTAGCTCCAAGTGACAGACGTTCGACGTCATTTCCGCCCGCAAAAACAGCGAAAGAAAAAAAAAACAAAACCAACGCACCAAGTGTCCGAGGAAGTGTCCAACCGGAAGCGATCAAAGACAAACAGTGTGTGTGTGTGTGTGCCACAGTGTGTGTTTGCGTGTGTGCAGTGCATTGTTAGAGTGATCTTTGTGAGGCGTCAATCACAATGAAGGCTTTCGTTCTGGGATCTGCCGTGCTGCTGCTGGCTTCGGCCGCGGCTTCCGGCTCGTACCTCGGCGTGGCGCTCTCGTCCCAGTACCAGGCGCACGACGGTATCGGCGGCTACTCGTACGGCTACGCCGAGCCGAACTCGCAGAAGCACGAAACGAAGGATGCGCACGGCATCACGCACGGCGGCTACTCGTACGTCGACGCGAACGGCCACGTGCAGAGCGTGAAGTACACGGCGGACCCGATCCACGGATTCCAGGTGTCGGGCACGAACCTGCCGAAGGGCCCGGCCCCGCATGCCGTCCCGGTGCCGGCCTGGAACGCGTACGCCTA CGCCCCGGTGGTGCTCGGCCACAACGGTGCCCCGCTCGAG ACG CCCGAag ] [+] EMBL BM609375 [ CCGCAGTCCTAGAGTCCTACGCTCCTAGGAGGTTTCAGCACTCAAAAGAAAGCGACTAGCTCCAAGTGACAGACGTTCGACGTCATTTCCGCCCGCAAAAACAGCGAAAGAAAAAAAAAACAAAACCAACGCACCAAGTGTCCGGGGAAGTGTCCAACCGGAAGCGATCAAAGACAAACAGTGTGTGTGTGTGTGTGCCACAGTGTGTGTTTGCGTGTGTGCAGTGCATTGTTAGAGTGATCTTTGTGAGGCGTCAATCACAATGAAGGCTTTCGTTCTGGGATCTGCCGTGCTGCTGCTGGCTTCGGCCGCGGCTTCCGGCTCGTACCTCGGCGTGGCGCTCTCGTCCCAGTACCAGGCGCACGACGGTATCGGCGGCTACTCGTACGGCTACGCCGAGCCGAACTCGCAGAAGCACGAAACGAAGGATGCGCACGGCATCACGCACGGCGGCTACTCGTACGTCGACGCGAACGGCCACGTGCAGAGCGTGAAGTACACGGCGGACCCGATCCACGGATTCCAGGTGTCGGGCACGAACCTGCCGAAAGGCCCGGCCCCGCACGCCGTCCCGGTGCCGGCCTGGAACGCGTACGCCTA CGCCCCGGTGGTGCTCGGCCACAACGGTGCCCCGCTCGAG ACG CCCGAGGTGCAGGCCGCCAAGGCAGCGCACTTCGCGG ] [+] EMBL BM654214 [ CCGCAGTCCTAGAGTCCTACGCTCCTAGGAGGTTTCAGCACTCAAAAGAAAGCGACTAGCTCCAAGTGACAGACGTTCGACGTCATTTCCGCCCGCAAAAACAGCGAAAGAAAAAAAAAACAAAACCAACGCACCAAGTGTCCGGGGAAGTGTCCAACCGGAAGCGATCAAAGACAAACAGTGTGTGTGTGTGTGTGCCACAGTGTGTGTTTGCGTGTGTGCAGTGCATTGTTAGAGTGATCTTTGTGAGGCGTCAATCACAATGAAGGCTTTCGTTCTGGGATCTGCCGTGCTGCTGCTGGCTTCGGCCGCGGCTTCCGGCTCGTACCTCGGCGTGGCGCTCTCGTCCCAGTACCAGGCGCACAACGGTATCGGCGGCTACTCGTACGGCTACGCCGAGCCGAACTCGCAGAAGCACGAAACGAAGGATGCGCACGGCATCACGCACGGCGGCTACTCGTACGTCGACGCGAACGGCCACGTGCAGAGCGTGAAGTACACGGCGGACCCGATCCACGGATTCCAGGTGTCGGGCACGAACCTGCCGAAGGGCCCGGCCCCGCACGCCGTCCCGGTGCCGGCCTGGAACGCGTACGCCTACCCCCCCGGTGGTGCTCGGCCACAACGGTGCCCCGCTCGAGAACGCCCCGAGGTGCAGGCCGCCAAGGCAG ] [+] EMBL BX614499 [ TAGGAGGTTTCAGCACTCAAAAGAAAGCGACTAGCTCCAAGTGACAGACGTTCGACGTCATTTCCGCCCGCAAAAACAGCGAAAG AAAAAAAAAC AACCAACGCACCAAGTGTCCGGGGAAGTGTCCAACCGGAAGCGATCAAAGACAAACAGTGTGTGTGTGTGTGTGCCACAGTGTGTGTTTGCGTGTGTGCAGTGCATTGTTAGAGTGATCTTTGTGAGGCGTCAATCACAATGAAGGCTTTCGTTCTGGGATCTGCCGTGCTGCTGCTGGCTTCGGCCGCGGCTTCCGGCTCGTACCTCGGCGTGGCGCTCTCGTCCCAGTATCAGGCGCACGACGGTATCGGCGGCTACTCGTACGGCTACGCCGAGCCGAACTCGCAGAAGCACGAAACGAAGGATGCGCACGGCATCACGCACGGCGGCTACTCGTACGTCGACGCGAACGGCCACGTGCAGAGCGTGAAGTACACGGCGGACCCGATCCACGGATTCCAGGTGTCGGGCACGAACCTGCCGAAGGGCCCGGCCCCGCACGCCGTCCCGGTGCCGGCCTGGAACGCGTACGCCTA CGCGCCGGTGGTGCTCGGCCACAACGGTGCCCCGCT ] [+] EMBL BX624489 [ ATTTCCGCCCGCAAAAACAGCGAAAGAAAAAAAAAACAAAACCAACGCACCAAGTGTCCGAGGAAGNGNCCAACCGGAAGCGATCAAAGACAAACAGTGTGTGTGTGTGTGTGCCACAGTGTGTGTTTGCGTGTGTGCAGTGCATTGTTAGAGTGATCTTTGTGAGGCGTCAATCACAATGAAGGCTTTCGTTCTGGGATCTGCCGTGCTGCTGCTGGCTTCGGCCGCGGCTTCCGGCTCGTACCTCGGCGTGGCGCTCTCGTCCCAGTACCAGGCGCACGACGGTATCGGCGGCTACTCGTACGGCTACGCCGAGCCGAACTCGCAGAAGCACGAAACGAAGGATGCGCACGGCATCACGCACGGCGGCTACTCGTACGTCGACGCGAACGGCCACGTGCAGAGCGTGAAGTACACGGCGGACCCGATCCACGGATTCCAGGTGTCGGGCACGAACCTGCCGAAGGGCCCGGCCCCGCATGCCGTCCCGGTGCCGGCCTGGAACGCGTACGCCTA CGCCCCGGTGGTGCTCGGCCACAACGGTGCCCCGCTCGAG ACG CCCGAGGTGCAGGCCGCCAAGGCAGCGCACTTCGCGGGCCATGCCGCCGCCAAGGCCCGCCTGCACAAGCGCTCGCTGTACGCCCCGTGGACGTACGCGGCCGCCGCCCCCGGTCGTCCTCGGCCACAACGGAGTCCCGCTCG] [+] EMBL BM655961 [ ccgCGGGGAAGTGTCCAACCGGAAGCGATCAAAGACAAACAGTGTGTGTGTGTGTGTGCCACAGTGTGTGTTTGCGTGTGTGCAGTGCATTGTTAGAGTGATCTTTGTGAGGCGTCAATCACAATGAAGGCTTTCGTTCTGGGATCTGCCGTGCTGCTGCTGGCTTCGGCCGCGGCTTCCGGCTCGTACCTCGGCGTGGCGCTCTCGTCCCAGTACCAGGCGCACGACGGTATCGGCGGCTACTCGTACGGCTACGCCGAGCCGAACTCGCAGAAGCACGAAACGAAGGATGCGCACGGCATCACGCACGGCGGCTACTCGTACGTCGACGCGAACGGCCACGTGCAGAGCGTGAAGTACACGGCGGACCCGATCCACGGATTCCAGGTGTCGGGCACGAACCTGCCGAAGGGCCCGGCCCCGCACGCCGTCCCGGTGCCGGCCTGGAACGCGTACGCCTA CGCCCCGGTGGTGCTCGGCCACAACGGTGCCCCGCTCGAG ACG CCCGAGGTGCAGGCCGCCAAGGCAGCGCACTTCGCGGCCCATGCCGCCGCCAAGGCCCGCCTGCACAAGCGCTCGCTGTACGCCCC ] consensusID : consensus_8111#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 616 fasta sequence [CAAGAATCGCCACGAGGTTAATCCTAGAAGTCCTACGCTCCTAGCGAGGTTTCAGCACTCAAAAGAAAGCGACTAGCTCCAAGTGACAGACGTTCGACGTCATTTCCGCCCGCAAAAACAGCGAAAGAAAAAAAAAACAAAACCAACGCACCAAGTGTCCGAGGAAGTGTCCAACCGGAAGCGATCAAAGACAAACAGTGTGTGTGTGTGTGTGCCACAGTGTGTGTTTGCGTGTGTGCAGTGCATTGTTAGAGTGATCTTTGTGAGGCGTCAATCACAA-TGAAGGCTTTCGTTCTGGGATCTGCCGTGCTGCTGCTGGCTTCGGCCGCGGCTTCCGGCTCGTACCTCGGCGTGGCGCTCTCGTCCCAGTACCAGGCGCACGACGGTATCGGCGGCTACTCGTACGGCTACGCCGAGCCGAACTCGCAGAAGCACGAAACGAAGGATGCGCACGGCATCACGCACGGCGGCTACTCGTACGTCGACGCGAACGGCCACGTGCAGAGCGTGAAAGTACACGGCGGACCCGATCCACGGATTCCAGGTGTCGGGACACGAACCTGCCGAAGGGCCCGGGGCCCGCNATGCCGTCCCGGGTGCCGGCCTGGAACGCGTA] [+] EMBL BX466578 [CAAGAATCGCCACGAGGTTAATCCTAGAAGTCCTACGCTCCTAGCGAGGTTTCAGCACTCAAAAGAAAGCGACTAGCTCCAAGTGACAGACGTTCGACGTCATTTCCGCCCGCAAAAACAGCGAAAGAAAAAAAAAACAAAACCAACGCACCAAGTGTCCGAGGAAGTGTCCAACCGGAAGCGATCAAAGACAAACAGTGTGTGTGTGTGTGTGCCACAGTGTGTGTTTGCGTGTGTGCAGTGCATTGTTAGAGTGATCTTTGTGAGGCGTCAATCACAA TGAAGGCTTTCGTTCTGGGATCTGCCGTGCTGCTGCTGGCTTCGGCCGCGGCTTCCGGCTCGTACCTCGGCGTGGCGCTCTCGTCCCAGTACCAGGCGCACGACGGTATCGGCGGCTACTCGTACGGCTACGCCGAGCCGAACTCGCAGAAGCACGAAACGAAGGATGCGCACGGCATCACGCACGGCGGCTACTCGTACGTCGACGCGAACGGCCACGTGCAGAGCGTGAAAGTACACGGCGGACCCGATCCACGGATTCCAGGTGTCGGGACACGAACCTGCCGAAGGGCCCGGGGCCCGCNATGCCGTCCCGGGTGCCGGCCTGGAACGCGTA] [+] EMBL BX619683 [ CCTAG GAGGTTTCAGCACTCAAAAGAAAGCGACTAGCTCCAAGTGACAGACGTTCGACGTCATTTCCGCCCGCAAAAACAGCGAAAGAAAAAAAAAACAAAACCAACGCACCAAGTGTCCGAGGAAGTGTCCAACCGGAAGCGATCAAAGACAAACAGTGTGTGTGTGTGTGTGCCACAGTGTGTGTTTGCGTGTGTGCAGTGCATTGTTAGAGTGATCTTTGTGAGGCGTCAATCACAATTGAAGGCTTTCGTTCTGGGATCTGCCGTGCTGCTGCTGGCTTCGGCCGCGGCTTCCGGCTCGTACCTCGGCGTGGCGCTCTCGTCCCAGTACCAGGCGCACGACGGTATCGGCGGCTACTCGTACGGCTACGCCGAGCCGAACTCGCAGAAGCACGAAACGAAGGATGCGCACGGCATCACGCACGGCGGCTACTCGTACGTCGACGCGAACGGCCACGTG ] consensusID : consensus_8111#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 609 fasta sequence [CCGCCCACGCGTCCGAGCGACTAGCTCCAAGTGACAGACGTTCGACGTCATTTCCGCCCGCAAAAACAGCGAAAGAAAAAAAAAACAAAACCAACGCACCAAGTGTCCGGGGAAGTGTCCAACCGGAAGCGATCAAAGACAAACAGTGTGTGTGTGTGTGTGCCACAGTGTGTGTTTGCGTGTGTGCAGTGCATTGTTAGAGTGATCTTTGTGAGGCGTCAATCACAATGAAGGCTTTCGTTCTGGGATCTGCCGTGCTGCTGCTGGCTTCGGCCGCGGCTTCCGGCTCGTACCTCGGCGTGGCGCTCTCGTCCCAGTACCAGGCGCACGACGGTATCGGCGGCTACTCGTACGGCTACGCCGAGCCGAACTCGCAGAAGCACGAAACGAAGGATGCGCACGGCATCACGCACGGCGGCTACTCGTACGTCGACGCGAACGGCCACGTGCAGAGCGTGAAGTACACGGCGGACCCGATCCACGGATTCCAGGTGTCGGGCACGAACCTGCCGAAGGGCCCGGCCCCGCACGCCGTCCCGGTGCCGGCCTGGAACGCGTACGCCTACGCCCCGGTGGTGCTCGGCCACAACGGTGCCCCGCTCGAGACGC] [+] EMBL BM635481 [CCGCCCACGCGTCCGAGCGACTAGCTCCAAGTGACAGACGTTCGACGTCATTTCCGCCCGCAAAAACAGCGAAAGAAAAAAAAAACAAAACCAACGCACCAAGTGTCCGGGGAAGTGTCCAACCGGAAGCGATCAAAGACAAACAGTGTGTGTGTGTGTGTGCCACAGTGTGTGTTTGCGTGTGTGCAGTGCATTGTTAGAGTGATCTTTGTGAGGCGTCAATCACAATGAAGGCTTTCGTTCTGGGATCTGCCGTGCTGCTGCTGGCTTCGGCCGCGGCTTCCGGCTCGTACCTCGGCGTGGCGCTCTCGTCCCAGTACCAGGCGCACGACGGTATCGGCGGCTACTCGTACGGCTACGCCGAGCCGAACTCGCAGAAGCACGAAACGAAGGATGCGCACGGCATCACGCACGGCGGCTACTCGTACGTCGACGCGAACGGCCACGTGCAGAGCGTGAAGTACACGGCGGACCCGATCCACGGATTCCAGGTGTCGGGCACGAACCTGCCGAAGGGCCCGGCCCCGCACGCCGTCCCGGTGCCGGCCTGGAACGCGTACGCCTACGCCCCGGTGGTGCTCGGCCACAACGGTGCCCCGCTCGAGACGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8111#0 ------------CCGGCCCGCAGTCCTAGAGTCCTACGCTCCTAGGAGGTTTCAGCACTC 48 consensus_8111#2 ----------------------------------------------------CCGCCCAC 8 consensus_8111#1 CAAGAATCGCCACGAGGTTAATCCTAGAAGTCCTACGCTCCTAGCGAGGTTTCAGCACTC 60 * ** * * consensus_8111#0 AAAAGAAAGCGACTAGCTCCAAGTGACAGACGTTCGACGTCATTTCCGCCCGCAAAAACA 108 consensus_8111#2 GCGTCCGAGCGACTAGCTCCAAGTGACAGACGTTCGACGTCATTTCCGCCCGCAAAAACA 68 consensus_8111#1 AAAAGAAAGCGACTAGCTCCAAGTGACAGACGTTCGACGTCATTTCCGCCCGCAAAAACA 120 ***************************************************** consensus_8111#0 GCGAAAGAAAAAAAAAACAAAACCAACGCACCAAGTGTCCGGGGAAGTGTCCAACCGGAA 168 consensus_8111#2 GCGAAAGAAAAAAAAAACAAAACCAACGCACCAAGTGTCCGGGGAAGTGTCCAACCGGAA 128 consensus_8111#1 GCGAAAGAAAAAAAAAACAAAACCAACGCACCAAGTGTCCGAGGAAGTGTCCAACCGGAA 180 ***************************************** ****************** consensus_8111#0 GCGATCAAAGACAAACAGTGTGTGTGTGTGTGTGCCACAGTGTGTGTTTGCGTGTGTGCA 228 consensus_8111#2 GCGATCAAAGACAAACAGTGTGTGTGTGTGTGTGCCACAGTGTGTGTTTGCGTGTGTGCA 188 consensus_8111#1 GCGATCAAAGACAAACAGTGTGTGTGTGTGTGTGCCACAGTGTGTGTTTGCGTGTGTGCA 240 ************************************************************ consensus_8111#0 GTGCATTGTTAGAGTGATCTTTGTGAGGCGTCAATCACAATGAAGGCTTTCGTTCTGGGA 288 consensus_8111#2 GTGCATTGTTAGAGTGATCTTTGTGAGGCGTCAATCACAATGAAGGCTTTCGTTCTGGGA 248 consensus_8111#1 GTGCATTGTTAGAGTGATCTTTGTGAGGCGTCAATCACAATGAAGGCTTTCGTTCTGGGA 300 ************************************************************ consensus_8111#0 TCTGCCGTGCTGCTGCTGGCTTCGGCCGCGGCTTCCGGCTCGTACCTCGGCGTGGCGCTC 348 consensus_8111#2 TCTGCCGTGCTGCTGCTGGCTTCGGCCGCGGCTTCCGGCTCGTACCTCGGCGTGGCGCTC 308 consensus_8111#1 TCTGCCGTGCTGCTGCTGGCTTCGGCCGCGGCTTCCGGCTCGTACCTCGGCGTGGCGCTC 360 ************************************************************ consensus_8111#0 TCGTCCCAGTACCAGGCGCACGACGGTATCGGCGGCTACTCGTACGGCTACGCCGAGCCG 408 consensus_8111#2 TCGTCCCAGTACCAGGCGCACGACGGTATCGGCGGCTACTCGTACGGCTACGCCGAGCCG 368 consensus_8111#1 TCGTCCCAGTACCAGGCGCACGACGGTATCGGCGGCTACTCGTACGGCTACGCCGAGCCG 420 ************************************************************ consensus_8111#0 AACTCGCAGAAGCACGAAACGAAGGATGCGCACGGCATCACGCACGGCGGCTACTCGTAC 468 consensus_8111#2 AACTCGCAGAAGCACGAAACGAAGGATGCGCACGGCATCACGCACGGCGGCTACTCGTAC 428 consensus_8111#1 AACTCGCAGAAGCACGAAACGAAGGATGCGCACGGCATCACGCACGGCGGCTACTCGTAC 480 ************************************************************ consensus_8111#0 GTCGACGCGAACGGCCACGTGCAGAGCGTGAA-GTACACGGCGGACCCGATCCACGGATT 527 consensus_8111#2 GTCGACGCGAACGGCCACGTGCAGAGCGTGAA-GTACACGGCGGACCCGATCCACGGATT 487 consensus_8111#1 GTCGACGCGAACGGCCACGTGCAGAGCGTGAAAGTACACGGCGGACCCGATCCACGGATT 540 ******************************** *************************** consensus_8111#0 CCAGGTGTCGGG-CACGAACCTGCCGAAGGGCCCGG--CCCCGCACGCCGTCCCGG-TGC 583 consensus_8111#2 CCAGGTGTCGGG-CACGAACCTGCCGAAGGGCCCGG--CCCCGCACGCCGTCCCGG-TGC 543 consensus_8111#1 CCAGGTGTCGGGACACGAACCTGCCGAAGGGCCCGGGGCCCGCNATGCCGTCCCGGGTGC 600 ************ *********************** *** * ********** *** consensus_8111#0 CGGCCTGGAACGCGTACGCCTACGCCCCGGTGGTGCTCGGCCACAACGGTGCCCCGCTCG 643 consensus_8111#2 CGGCCTGGAACGCGTACGCCTACGCCCCGGTGGTGCTCGGCCACAACGGTGCCCCGCTCG 603 consensus_8111#1 CGGCCTGGAACGCGTA-------------------------------------------- 616 **************** consensus_8111#0 AGACGCCCGAGGTGCAGGCCGCCAAGGCAGCGCACTTCGCGGGCCATGCCGCCGCCAAGG 703 consensus_8111#2 AGACGC------------------------------------------------------ 609 consensus_8111#1 ------------------------------------------------------------ consensus_8111#0 CCCGCCTGCACAAGCGCTCGCTGTACGCCCCGTGGACGTACGCGGCCGCCGCCCCCGGTC 763 consensus_8111#2 ------------------------------------------------------------ consensus_8111#1 ------------------------------------------------------------ consensus_8111#0 GTCCTCGGCCACAACGGAGTCCCGCTCG 791 consensus_8111#2 ---------------------------- consensus_8111#1 ---------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||