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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8122#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 982 fasta sequence
[ACAAGAACGTGCCGGACATGTTCGACATCTTTAGGCGCATTTTCAACGAGCTCGAGCTGAACGACGTTA-AGCGGTTTGAGATGCTGCTAGAAAACTACCTGTCCGAGATGTCGGTCGGTATCGCCCAGTCCGGGCACATGTACGCGATGCAGAACGCGAACGGGTTGGTAACGGAGGCGGGCCGGCTCAGGGAGCGGCTGATGGGCATCGAGCATCTCGCCTTCATGAAGGATCTGGCCCAGCGCCATTCGGCCGAGGAAATTCTGGACAAATGCCGCTCGATTGCGAAGCTGTTCGAGGAGTCGGGAATGCGCTGCGCACTTAACTTTACGCTCACCTCGGAGCAGCAAACGGTGCAGCACTACGGCAAGTTCATCGACAGCATTCCCGTGCGCAGTACGCAGGCGAGGGTTTGGAACGTTTCGGAGCCGCTTGCGACGACGCCGGCGGGTGCCTGCCGCCACACGGTCATGAACATTCCCGTCAACTACTGCGCCAAGTCGATCGTGGCCGTCCCGTACACCCATCGCCACTATGCGCCGCTGAAGGTGCTCGCGAAGTACCTGTCGGCCAAGTATCTGCTGCCGGTGGTGCGCGAACAGAACGGTGCGTACGGTGCGGGTGCGAAAATCACGTCGGACGGGCTGTTCAACTTCTACAGCTACCGCGATCCGAACTCGCGCACCACGCTGGACGTGTTCGATGAGGCGTACAGGTGGAACGTGCGCACCGTGCCGCAGATGGACGAGCAGACGCTGTTCGAGGCGAAGCTGGGCGTGCTGCAGCAGCTGGACGTGCCGATTGCGCCGCTCGAGCGGGGCATGGATCTGTTCCGGCAGGGCATTTCCGACGAGCTGTTCGGGCAGCACCGTGCGGCCGTGCTGGACGTCGGCAAGGACCTGCTGCTGGAGGTCAACGAGCACTATCTGAAGCCGGGCGCGGTGAAGGTGGTTGGGAAGTCGGTGCTCGGACCGGAAAACAA]
[+] EMBL BX610231 [ACAAGAACGTGCCGGACATGTTCGACATCTTTAGGCGCATTTTCAACGAGCTCGAGCTGAACGACGTTA AGCGGTTTGAGATGCTGCTAGAAAACTACCTGTCCGAGATGTCGGTCGGTATCGCCCAGTCCGGGCACATGTACGCGATGCAGAACGCGAACGGGTTGGTAACGGAGGCGGGCCGGCTCAGGGAGCGGCTGATGGGCATCGAGCATCTCGCCTTCATGAAGGATCTGGCCCAGCGCCATTCGGCCGAGGAAATTCTGGACAAATGCCGCTCGATTGCGAAGCTGTTCGAGGAGTCGGGAATGCGCTGCGCACTTAACTTTACGCTCACCTCGGAGCAGCAAACGGTGCAGCACTACGGCAAGTTCATCGACAGCATTCCCGTGCGCAGTACGCAGGCGAGGGTTTGGAACGTTTCGGAGCCGCTTGCGACGACGCCGGCGGGTGCCTGCCGCCACACGGTCATGAACATTCCCGTCAACTACTGCGCCAAGTCGATCGTGGCCGTCCCGTACACCCATCGCCACTATTCGCCGCTGAAGGTGCTCGCGAAGTACCTGTCGGCCAAGTATCTGCTGCCGGTGGTGCGCGAACAGAACGGTGCGTACGGTGCGGGTGCGAAAATCACGTCGGACGGGCTGTTCAACTTCTACAGCTACCGCGATCCGAACTCGCGCACCACGCT ]
[+] EMBL BX619322 [ TTCAACGAGCTCGAGCTGAACGACGTTAGAGCGGTTTGAGATGCTGCTAGAAAACTACCTGTCCGAGATGTCGGTCGGTATCGCCCAGTCCGGGCACATGTACGCGATGCAGAACGCGAACGGGTTGGTAACGGAGGCGGGCCGGCTCAGGGAGCGGCTGATGGGCATCGAGCATCTCGCCTTCATGAAGGATCTGGCCCAGCGCCATTCGGCCGAGGAAATTCTGGACAAATGCCGCTCGATTGCGAAGCTGTTCGAGGAGTCGGGAATGCGCTGCGCACTTAACTTTACGCTCACCTCGGAGCAGCAAACGGTGCAGCACTACGGCAAGTTCATCGACAGCATTCCCGTGCGCAGTACGCAGGCGAGGGTTTGGAACGTTTCGGAGCCGCTTGCGACGACGCCGGCGGGTGCCTGCCGCCACACGGTCATGAACATTCCCGTCAACTACTGCGCCAng ]
[+] EMBL BX620547 [ GCTGAACGACGTTA AGCGGTTTGAGATGCTGCTAGAAAACTACCTGTCCGAGATGTCGGTCGGTATCGCCCAGTCCGGGCACATGTACGCGATGCAGAACGCGAACGGGTTGGTAACGGAGGCGGGCCGGCTCAGGGAGCGGCTGATGGGCATCGAGCATCTCGCCTTCATGAAGGATCTGGCCCAGCGCCATTCGGCCGAGGAAATTCTGGACAAATGCCGCTCGATTGCGAAGCTGTTCGAGGAGTCGGGAATGCGCTGCGCACTTAACTTTACGCTCACCTCGGAGCAGCAAACGGTGCAGCACTACGGCAAGTTCATCGACAGCATTCCCGTGCGCAGTACGCAGGCGAGGGTTTGGAACGTTTCGGAGCCGCTTGCGACGACGCCGGCGGGTGCCTGCCGCCACACGGTCATGAACATTCCCGTCAACTACTGCGCCAAGTCGATCGTGGCCGTCCCGTACACCCATCGCCACTATGCGCCGCTGAAGGTGCTCGCGAAGTACCTGTCGGCCAAGTATCTGCTGCCGGTGGTGCGCGAACAGAACGGTGCGTACGGTGCGGGTGCGAAAATCACGTCGGACGGGCTGTTCAACTTCTACAGCTACCGCGATCCGAACTCGCGCACCACGCT ]
[+] EMBL BX628915 [ TGAACGACGTTA AGCGGTTTGAGATGCTGCTAGAAAACTACCTGTCCGAGATGTCGGTCGGTATCGCCCAGTCCGGGCACATGTACGCGATGCAGAACGCGAACGGGTTGGTAACGGAGGCGGGCCGGCTCAGGGAGCGGCTGATGGGCATCGAGCATCTCGCCTTCATGAAGGATCTGGCCCAGCGCCATTCGGCCGAGGAAATTCTGGACAAATGCCGCTCGATTGCGAAGCTGTTCGAGGAGTCGGGAATGCGCTGCGCACTTAACTTTACGCTCACCTCGGAGCAGCAAACGGTGCAGCACTACGGCAAGTTCATCGACAGCATTCCCGTGCGCAGTACGCAGGCGAGGGTTTGGAACGTTTCGGAGCCGCTTGCGACGACGCCGGCGGGTGCCTGCCGCCACACGGTCATGAACATTCCCGTCAACTACTGCGCCAAGTCGATCGTGGCCGTCCCGTACACCCATCGCCACTATGCGCCGCTGAAGGTGCTCGCGAAGTACCTGTCGGCCAAGTATCTGCTGCCGGTGGTGCGCGAACAGAACGGTGCGTACGGTGCGGGTGCGAAAATCACGTCGGACGGGCTGTTCAACTTCTACAGCTACCGCGATCCGAACTCGCGCACCACGCTG ]
[+] EMBL BX628904 [ GTTA AGCGGNTTGAGATGCTGCTATAAAACTACCTGTCCNAGATGTCGGTCGGTATCTCCCAGTCCGGGCACNTGTACGCGATGCANAACGCTAACGGGTTGGTAACNGAGGCNGGCCGGCTCAGGGAGCGGCTGATGGGCATCTAGCATCTCGCCTTNATGAAGGATCTGGCCCAGCGCCATTCGGCCGAGGAAATTCTGGACAAATGCCGCTCGATTGCNAAGCTGTTCGAGGAGTCGGGAATGCGCTGCNCACTTAACTTTACNCTCACCTCGGANCAGCAAACGGTGCAGCACTACGGCAAGTTCATCGACAGCATTCCCGTGCGCAGTACGCAGGCGAGGGTTTGGA ]
[+] EMBL BX620047 [ ACTACCTGTCCGAGATGTCGGTCGGTATCGCCCAGTCCGGGCACATGTACGCGATGCAGAACGCGAACGGGTTGGTAACGGAGGCGGGCCGGCTCAGGGAGCGGCTGATGGGCATCGAGCATCTCGCCTTCATGAAGGATCTGGCCCAGCGCCATTCGGCCGAGGAAATTCTGGACAAATGCCGCTCGATTGCGAAGCTGTTCGAGGAGTCGGGAATGCGCTGCGCACTTAACTTTACGCTCACCTCGGAGCAGCAAACGGTGCAGCACTACGGCAAGTTCATCGACAGCATTCCCGTGCGCAGTACGCAGGCGAGGGTTTGGAACGTTTCGGAGCCGCTTGCGACGACGCCGGCGGGTGCCTGCCGCCACACGGTCATGAACATTCCCGTCAACTACTGCGCCAAGTCGATCGTGGCCGTCCCGTACACCCATCGCCACTATGCGCCGCTGAAGGTGCTCGCGAAGTACCTGTCGGCCAAGTATCTGCTGCCGGTGGTGCGCGAACAGAACGGTGCGTACGGTGCGGGTGCGAAAATCACGTCGGACGGGCTGTTCAACTTCTACAGCTACCGCGATCCGAACTCGCGCACCACGCT ]
[+] EMBL BX607652 [ TCGGCCGAGGAAATTCTGGACAAATGCCGCTCGATTGCGAAGCTGTTCGAGGAG CGGGAATGCGCTGCGCACTGAACTTTACACCCACCTCGGAGCAGCAAACGGTGCAGCACTACGGCAAGTTCATCGACAGCATTCCCGTGCGCAGTACGCAGACGAGGGTTTGGAACGTTTCGGAGCCGCTGGCGACGACGCCGGCGGGTGCCTGCCGCCACACGGTTATGAACATTCCCGTCAACTACTGCGCCAAGTCGATCGTGGCCGTCCCGTACACCCATCGCCACTACGCGCCGCTGAAGGTGCTCGCGAAGTACCTGTCGGCCAAGTATCTGCTGCCTGTGGTGCGCGAACAGAACGGCGCGTACGGTGCGGGTGCGAAGATCACGTCGGACGGGCTGTTCAACTTCTACAGCTACCGCGATCCGAACTCGCGCACCACGCTGGACGTGTTCGATGAGGCGTACAGGTGGAACGTGCGCACCGTGCCGCAGATGGACGAGCAGACGCTGTTCGAGGCGAAGCTGGGCGTGCTGCAGCAGCTGGACGTGCCGATTGCGCCGCTCGAGCGGGGCATGGATCTGTTCCGGCAGGGCATTTCCGACGAGCTGTTCGGGCAGCACCGTGCGGCCGTGCTGGACGTCGGCAAGGACCTGCTGCTGGAGGTCAACGAGCACTATCTGAAGCCGGGCGCGGTGAAGGTGGTTGGGAAGTCGGTGCTCGGACCGGAAAACAA]
consensusID : consensus_8122#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 630 fasta sequence
[TCGCACGAGGTGTACGGACATGTTCGACATCTTTAGCGCATTTTCAACGAGCTCGAGCTGAACGACGTTAAGCGGTTTGAGATGCTGCTAGAAAACTACCTGTCCGAGATGTCGGTCGGTATCGCCCAGTCCGGGCACATGTACGCGATGCAGAACGCGAACGGGTTGGTAACGGAAGCGGGCCGGCTCAAGGAGCGGCTGATGGGCATCGAGCATCTCGCCTTCATGAAGGATCTGGCCCAGCGCCATTCGGCCGAGGAAATTCTGGACAAATGCCGCTCGATTGCGAAGCTGTTCGAGAGTCTNGGAATGCGCTGCGCACTTAACTTTACGCTCACCTCGGAGCAGCAAACGGTGCAGCACTACGGNAAGTTCACTCGACAGGATTCCCGTGCGCAGTACGCAGGCGAGGGTTTGGNACGTTTCGGAGCCGCTTGCGACGANGCCGGGCGGGTGCCTGTCGGCACACGGGTCATTGAACATTCCCGTGCAACGTACTGNGGCCAAGNTCGATCGTGGGGCGTAGCCGTANACGCCATTGGCACTATGGAGCCGCGTGAAGGTGCTCCGCCGAAAGTACCTGTCAGGCCGAAGTATCTGCTGACAGGTAGGTGGCGCGCAACAGGAACG]
[+] EMBL BX468999 [TCGCACGAGGTGTACGGACATGTTCGACATCTTTAGCGCATTTTCAACGAGCTCGAGCTGAACGACGTTAAGCGGTTTGAGATGCTGCTAGAAAACTACCTGTCCGAGATGTCGGTCGGTATCGCCCAGTCCGGGCACATGTACGCGATGCAGAACGCGAACGGGTTGGTAACGGAAGCGGGCCGGCTCAAGGAGCGGCTGATGGGCATCGAGCATCTCGCCTTCATGAAGGATCTGGCCCAGCGCCATTCGGCCGAGGAAATTCTGGACAAATGCCGCTCGATTGCGAAGCTGTTCGAGAGTCTNGGAATGCGCTGCGCACTTAACTTTACGCTCACCTCGGAGCAGCAAACGGTGCAGCACTACGGNAAGTTCACTCGACAGGATTCCCGTGCGCAGTACGCAGGCGAGGGTTTGGNACGTTTCGGAGCCGCTTGCGACGANGCCGGGCGGGTGCCTGTCGGCACACGGGTCATTGAACATTCCCGTGCAACGTACTGNGGCCAAGNTCGATCGTGGGGCGTAGCCGTANACGCCATTGGCACTATGGAGCCGCGTGAAGGTGCTCCGCCGAAAGTACCTGTCAGGCCGAAGTATCTGCTGACAGGTAGGTGGCGCGCAACAGGAACG]
consensusID : consensus_8122#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 290 fasta sequence
[CTNGTTTCCTGGCAGGGGCATTTCCGGTACGAGCTGTTTCGGCAGCACCGTGTCGTGCCCGTTGCTGGACGTCGGCAAGGACCTTGCTGCTGGAGGTGAACGAGCACTATCTGAAGCCGGGCACAGGTGAAAGTGGTTTGGAAAGTCGGTGCTCGGACCGGAACACAAGCAGCTCTCGAAGGACGGTGAAAACTGGACGACTTTTGCGTTGCAATAAGGAGGAAGTGCTGCTGTGTGTCTAATAAAAATGATGTTCTACTTNAGTCCGTCGGGCCGATCTGCTCGGNCAA]
[-] EMBL AL696674 [CTNGTTTCCTGGCAGGGGCATTTCCGGTACGAGCTGTTTCGGCAGCACCGTGTCGTGCCCGTTGCTGGACGTCGGCAAGGACCTTGCTGCTGGAGGTGAACGAGCACTATCTGAAGCCGGGCACAGGTGAAAGTGGTTTGGAAAGTCGGTGCTCGGACCGGAACACAAGCAGCTCTCGAAGGACGGTGAAAACTGGACGACTTTTGCGTTGCAATAAGGAGGAAGTGCTGCTGTGTGTCTAATAAAAATGATGTTCTACTTNAGTCCGTCGGGCCGATCTGCTCGGNCAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8122#0 --ACAAGAACGTGCCGGACATGTTCGACATCTTTAGGCGCATTTTCAACGAGCTCGAGCT 58
consensus_8122#1 TCGCACGAGGTGTACGGACATGTTCGACATCTTTAG-CGCATTTTCAACGAGCTCGAGCT 59
consensus_8122#2 ------------------------------------------------------------
consensus_8122#0 GAACGACGTTAAGCGGTTTGAGATGCTGCTAGAAAACTACCTGTCCGAGATGTCGGTCGG 118
consensus_8122#1 GAACGACGTTAAGCGGTTTGAGATGCTGCTAGAAAACTACCTGTCCGAGATGTCGGTCGG 119
consensus_8122#2 ------------------------------------------------------------
consensus_8122#0 TATCGCCCAGTCCGGGCACATGTACGCGATGCAGAACGCGAACGGGTTGGTAACGGAGGC 178
consensus_8122#1 TATCGCCCAGTCCGGGCACATGTACGCGATGCAGAACGCGAACGGGTTGGTAACGGAAGC 179
consensus_8122#2 -----------------------------------------CTNGTTTCCTGGCAGGGGC 19
* ** * * * **
consensus_8122#0 GGGCCGGCTCAGGGAGCGGCTGATGGGCATCGAGCATCTCGCCTTCAT-GAAGGATCTGG 237
consensus_8122#1 GGGCCGGCTCAAGGAGCGGCTGATGGGCATCGAGCATCTCGCCTTCAT-GAAGGATCTGG 238
consensus_8122#2 ATTTCCGGT--ACGAGCTGTT--TCGGCAGC-ACCGTGTCGTGCCCGTTGCTGGACGTCG 74
* * * **** * * * **** * * * * *** * * * *** * *
consensus_8122#0 CCCAGCGCCATTCGGCCGAGGAAATTCTGGACAAATGCCGCTCGATTGCGAAGCTGTTCG 297
consensus_8122#1 CCCAGCGCCATTCGGCCGAGGAAATTCTGGACAAATGCCGCTCGATTGCGAAGCTGTTCG 298
consensus_8122#2 GCAAGGACCTTGCTGCTGGAGG-----TGAACGAGCACTATCTGA------AGCCGGGCA 123
* ** ** * * ** * * ** ** * * ** *** * *
consensus_8122#0 AGGAGTCGGGAATGCGCTGCGCACTTAACTTTACGCTCACCTCGGAGCAGCAAACGGTGC 357
consensus_8122#1 AGAGTCTNGGAATGCGCTGCGCACTTAACTTTACGCTCACCTCGGAGCAGCAAACGGTGC 358
consensus_8122#2 CAGGT----GAAAGTGGTTTGGA---AAGTCGGTGCTCGGACCGGAACACAAGCAGCTCT 176
*** * * * * * ** * **** **** ** * * *
consensus_8122#0 AGCACTACGGCAAGTTCA-TCGACAGCATTCCCGTGCGCAGTACGCAGGCGAGGGTTTGG 416
consensus_8122#1 AGCACTACGGNAAGTTCACTCGACAGGATTCCCGTGCGCAGTACGCAGGCGAGGGTTTGG 418
consensus_8122#2 CGAAGGACGGTGAA--AACTGGACGACTTTTGCGT-TGCAATAAGGAGG--AAGTGCTGC 231
* * **** * * * *** ** *** *** ** * *** * * **
consensus_8122#0 AACGTTTCGGAGCCGCTTGCGACGACGCCGG-CGGGTGCCTGCCGCCACACGG-TCAT-G 473
consensus_8122#1 NACGTTTCGGAGCCGCTTGCGACGANGCCGGGCGGGTGCCTGTCGGCACACGGGTCATTG 478
consensus_8122#2 TGTGTGTCTAA-----TAAAAATGATGTTCTACTTNAGTCCGTCGGGCCGATC-TGCTCG 285
** ** * * * ** * * * * * ** * * * *
consensus_8122#0 AACATTCCCGT-CAAC-TACTGCGCC--AAGTCGATCGTGGC-CGTC-CCGTACAC-CCA 526
consensus_8122#1 AACATTCCCGTGCAACGTACTGNGGCCAAGNTCGATCGTGGGGCGTAGCCGTANACGCCA 538
consensus_8122#2 GNCAA------------------------------------------------------- 290
**
consensus_8122#0 TCGCCACTATGC-GCCGC-TGAAGGTGCTC-GC--GAAGTACCTGTCGGCC--AAGTATC 579
consensus_8122#1 TTGGCACTATGGAGCCGCGTGAAGGTGCTCCGCCGAAAGTACCTGTCAGGCCGAAGTATC 598
consensus_8122#2 ------------------------------------------------------------
consensus_8122#0 TGCTGCC-----GGTGGTGCGCGAACAGAACGGTGCGTACGGTGCGGGTGCGAAAATCAC 634
consensus_8122#1 TGCTGACAGGTAGGTGGCGCGCAACAGGAACG---------------------------- 630
consensus_8122#2 ------------------------------------------------------------
consensus_8122#0 GTCGGACGGGCTGTTCAACTTCTACAGCTACCGCGATCCGAACTCGCGCACCACGCTGGA 694
consensus_8122#1 ------------------------------------------------------------
consensus_8122#2 ------------------------------------------------------------
consensus_8122#0 CGTGTTCGATGAGGCGTACAGGTGGAACGTGCGCACCGTGCCGCAGATGGACGAGCAGAC 754
consensus_8122#1 ------------------------------------------------------------
consensus_8122#2 ------------------------------------------------------------
consensus_8122#0 GCTGTTCGAGGCGAAGCTGGGCGTGCTGCAGCAGCTGGACGTGCCGATTGCGCCGCTCGA 814
consensus_8122#1 ------------------------------------------------------------
consensus_8122#2 ------------------------------------------------------------
consensus_8122#0 GCGGGGCATGGATCTGTTCCGGCAGGGCATTTCCGACGAGCTGTTCGGGCAGCACCGTGC 874
consensus_8122#1 ------------------------------------------------------------
consensus_8122#2 ------------------------------------------------------------
consensus_8122#0 GGCCGTGCTGGACGTCGGCAAGGACCTGCTGCTGGAGGTCAACGAGCACTATCTGAAGCC 934
consensus_8122#1 ------------------------------------------------------------
consensus_8122#2 ------------------------------------------------------------
consensus_8122#0 GGGCGCGGTGAAGGTGGTTGGGAAGTCGGTGCTCGGACCGGAAAACAA 982
consensus_8122#1 ------------------------------------------------
consensus_8122#2 ------------------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||