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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8158#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 1720 fasta sequence
[GCGGATGCAGAACCCCCCTCCCGGCACGGCACTAATGTTCTTCATTCTTCGATATTTGTAACGACCACGCTGGACGATTTGTTGTACATAATTGTTAACGCAAACTTCTAGTCAAGTTGTTTCCTTATTATTGTTTGCGAACTTTACGTTCAACAAACACGTTCCACGGTGAAACAACGCCCTACAAATCGATTGAAATGAATGCGACGAAAGCAATCGTTAGCGCTGAAGAAATATCGACCGTGTGTGTCCGACCTATTGTTTTGTGGAATGAAGCTGAAATGAAACGGAACATTCACGGCTAAGCTGCAATCGAACTTACGGTTCGTGCGCAAGAAGACAGGCCAGCTTGAGAAGGGAAACATTTAACATTGTAGTAACATAAAATGGTAATCATAAAACAGCAAACTGCACCGAGCGATGAGATAGACGCAAACATTGAAACTAAGAGCACTACTGTTGATATATTTCTATTACGCAGAACCAGAACCCCCCCCCCCTCCACCCCCCAAATCACACACACATCTCCCCATATCCCCGCGCTCCAACATAGAGTATGTTGCCCTCAACTAGTTATTGCGGGTGAAAATATAGGCGCAAAATACGTCAGAATGCTAAAACGAAACATGTTTAAATGGATAAGCGAATGGAACAAAGAAACAAAAGAAAAGAACATTAAAATCTAAACTCTACATATGCACTCACGTACGAACGCAACAAAGAAACAAACAAAAAATACTAGATGTCAAATTCGAGAGCAAACTCATACTAATAAATACAACAAAAGAAGAAAAAAGAAACACACAAACACACATAAAGAAGAGAAAATAATCATTCTTGCACAAGTTTAACTGGTGTCTACTAGCACAAACATAATAAGCGTGTGGCAGCAATCGCAAACTGCAACCATTCCTCACATGTTCGCATCCATTTGCGAACATGCTGAACATACCATTTAACAAAAGGAAACCATCTCCCCATTCACCCCGTTAAGGATAGGTTTGGAACAGCAGGGCAACGTCATTCGGCAGCAACACGCGATTGTTCAAGGGAGAGAGAAAACAAACAAACAATTGGGTGACCAAGTCGCGAAATTATGCAAACAATTTAATCGAAGCACAGACACACATAAACAAAACAAAAAGGAATAAAAAAAATAACAACCACACACTCTTCACTACTCTAAATGTGTAAAAGCTCCGCGAGATTCGAGATTGTACTGTGTGAAACTTTGGAACGATGTGACAGAAAAGGGGAAAGCAAAAGAAGAAAACGTGCGTTTTCGGTAGTGCTCCAATGCTAATGGTGTGGCTAAAGAAAGATTATTGTGCACACGTATAACTATA-TTTAAACGCTATCTCG-TAAAACT-GAAATCCCGC-TGAACTCTCCTAAACAGAACAACCAAAAAGAAGACGAAGAA---AAAAGAAACAAG-AAAA-ACANAGGAACTAAGACAATCCAAATTGCATCTCTCCCCCCACTTGTCTGTCTGTCCACCTGATTCATGTTTAAGAGCGTGTGTCCAAGCAAGCCGTGCGCGTGCGGCTCGTAGTGAAAAAGAGGCGGCGTTAGCAGGCGGTTTAAAGGGCTACAAAATTAAGTCATAATAGAGAGCATGTGTGATGTTGATGGGATGTTTTTTCCGTTTTTTTCGATATTTAAATAATAATAATTATAATAATAATATAAAACAGAGCATTACTGGAGACAGGTACACAGCAAG]
[+] EMBL BX604599 [GCGGATGCAGAACCCCCCTCCCGGCACGGCACTAATGTTCTTCATTCTTCGATATTTGTAACGACCACGCTGGACGATTTGTTGTACATAATTGTTAACGCAAACTTCTAGTCAAGTTGTTTCCTTATTATTGTTTGCGAACTTTACGTTCAACAAACACGTTCCACGGTGAAACAACGCCCTACAAATCGATTGAAATGAATGCGACGAAAGCAATCGTTAGCGCTGAAGAAATATCGACCGTGTGTGTCCGACCTATTGTTTTGTGGAATGAAGCTGAAATGAAACGGAACATTCACGGCTAAGCTGCAATCGAACTTACGGTTCGTGCGCAAGAAGACAGGCCAGCTTGAGAAGGGAAACATTTAACATTGTAGTAACATAAAATGGTAATCATAAAACAGCAAACTGCACCGAGCGATGAGATAGACGCAAACATTGAAACTAAGAGCACTACTGTTGATATATTTCTATTACGCAGAACCAGAACCCCCCCCCCCTCCACCCCCCAAATCACACACACATCTCCCCA ]
[+] EMBL BX616719 [ GAGAAGGGAAACATTTAACATTGTAGTAACATAAAATGGTAATCATAAAACAGCAAACTGCACCGAGCGATGAGATAGACGCAAACATTGAAACTAAGAGCACTACTGTTGATATATTTCTATTACGCAGAACCAGAACCCCCCCCCCCTCCTCCCCACAAATCACACACACATCTCCCCATATCCCCGCGCTCCAACATAGAGTATGTTGCCCTCAACTAGTTATTGCGGGTGAAAATATAGGCGCAAAATACGTCAGAATGCTAAAACGAAACATGTTTAAATGGATAAGCGAATGGAACAAAGAAACAAAAGAAAAGAACATTAAAATCTAAACTCTACATATGCACTCACGTACGAACGCAACAAAGAAACAAACAAAAAATACTAGATGTCAAATTCGAGAGCAAACTCATACTAATAAATACAACAAAAGAAGAAAAAAGAAACACACAAACACACATAAAGAAGAGAAAATAATCATTCTTGCACAAGTTTAAC ]
[+] EMBL BX626902 [ ATGCTAAAACGAAACATGTTTNAATGGATAAGCGAATGGAACAAAGAAACAAAAGAAAAGAACATTAAAATCTAAACTCTACATATGCACTCACGTACGAACGCAACAAAGAAACAAACAAAAAATACTAGATGTCAAATTCGAGAGCAAACTCATACTAATAAATACAACAAAAGAATAAAAAAGAAACACACAAACACACATAAAGAAGAGAAAATAATCATTCTTGCACAAGTTTAACTGGTGTCTACTAGCACAAACATAATAAGCGTGTGGCAGCAATCGCAAACTGCAACCATTCCTCACATGTTCGCATCCATTTGCGAACATGCTGAACATACCATTTAACAAAAGGAAACCATCTCCCCATTCACCCCGTTAAGGATAGGTTTGGAACAGCANGGCAACGTCATTCGGCAGCAA ]
[+] EMBL BX622685 [ AATGGATAAGCGAATGGAACAAAGAAACAAAAGAAAAGAACATTAAAATCTAAACTCTACATATGCACTCACGTACGAACGCAACAAAGAAACAAACAAAAAATACTAGATGTCAAATTCGAGAGCAAACTCATACTAATAAATACAACAAAAGAATAAAAAAGAAACACACAAACACACATAAAGAAGAGAAAATAATCATTCTTGCACAAGTTTAACTGGTGTCTACTAGCACAAACATAATAAGCGTGTGGCAGCAATCGCAAACTGCAACCATTCCTCACATGTTCGCATCCATTTGCGAACATGCTGAACATACCATTTAACAAAAGGAAACCATCTCCCCATTCACCCCGTTAAGGATAGGTTTGGAACAGCAGGGCAACGTCATTCGGCAGCAACACGCGATTGTTCAAGGGAGAGAGAAAACAAACAAACAATTGGGTGACCAAGTCGCGAAATTATGCAAACAATTTAATCGAAGCACAGACACACATAAACAAAACAAAAAGGAAT AAAAAAATAACAACCACACACTCTTCACTACTCTAAATGTGTAAAAGCTCCGCGAGATTCGAGATTGTACTGTGTGAAACNTTGGAACNATGTGA ]
[+] EMBL BX624964 [ AAAATCTAAACTCTACATATGCACTCACGTACGAACGCAACAAAGAAACAAACAAAAAATACTAGATGTCAAATTCGAGAGCAAACTCATACTAATAAATACAACAAAAGAAGAAAAAAGAAACACACAAACACACATAAAGAAGAGAAAATAATCATTCTTGCACAAGTTTAACTGGTGTCTACTAGCACAAACATAATAAGCGTGTGGCAGCAATCGCAAACTGCAACCATTCCTCACATGTTCGCATCCATTTGCGAACATGCTGAACATACCATTTAACAAAAGGAAACCATCTCCCCATTCACCCCGTTAAGGATAGGTTTGGAACAGCAGGGCAACGTCATTCGGCAGCAACACGCGATTGTTCAAGGGAGAGAGAAAACAAACAAACAATTGGGTGACCAAGTCGCGAAATTATGCAAACAATTTAATCGAAGCACAGACACACATAAACAAAACAAAAAGGAATAAAAAAAATAACAACCACACACTCTTCACTACTCTAAATGTGTAAAAGCTCCGCGAGATTCGAGATTGTACTGTGTGAAACTTTGGAACGATGTGACAGAAAAGGGGAAAGCAAAAGAAGAAAACGTGCGTTTTCGGTAGTGCTCCAATGCTAATGGTGTGGCTAAAGAAAGATTATTGTGCACACGTATAACTATA TTTAAACGCTATCTCG TAAAACT GAAATCCCGC TGAACTCTCCTAAACAGAACAACCAAAAAG ]
[+] EMBL AL694771 [ ccgcaggttAACAAAAGAAGAAAAAAGAAACACACAAACACACATAAAGAAGAGAAAATAATCATTCTTGCACAAGTTTAACTGGTGTCTACTAGCACAAACATAATAAGCGTGTGGCAGCAATCGCAAACTGCAACCATTCCTCACATGTTCGCATCCATTTGCGAACATGCTGAACATACCATTTAACAAAAGGAAACCATCTCCCCATTCACCCCGTTAAGGATAGGTTTGGAACAGCAGGGCAACGTCATTCGGCAGCAACACGCGATTGTTCAAGGGAGAGAGAAAACAAACAAACAATTGGGTGACCAAGTCGCGAAATTATGCAAACAATTTAATCGAAGCACAGACACACATAAACAAAACAAAAAGGAATAAACAAAATAACAACCACACACTCTTCACTACTCTAAATGTGTAAAAGCTCCGCGAGATTCGAGATTGTACTGTGTGAAACTTTGGAACGATGTGACAGAAAAGGGGAAAGCAAAAGAAGAAAACGTGCGTTTTCGGTAGTGNTCCAATGCTAATGGTGTGGGTAAAGAAAGATTATTGTGCACACGTATTACTATACTTTAAACGCTATCTCGTTAAAACTGGAAATCCCGCGTGAACTCTCCTAAACAGAACAACCAAAAAGAAGACGAAGAACACAAAAGAAACAAGCAAAACACANAGGAACTAAGACAATCCAAATTGCATCTCTCCCCCCA ]
[+] EMBL BX625657 [ TGTGGCANCAATCNCAAACTGCAACCATTCCTCANATGTTCGCATCCATTTGng ]
[+] EMBL BX627715 [ ACTCTAAATGTGTAAAAGCTCCGCGAGATTCGAGATTGTACTGTGTGAAACTTTGGAACGATGTGACAGAAAAGGGGAAAGCAAAAGAAGAAAACGTGCGTTTTCGGTAGTGCTCCAATGCTAATGGTGTGGCTAAAGAAAGATTATTGTGCACACGTATAACTATA TTTAAACGCTATCTCG TAAAACT GAAATCCCGC TGAACTCTCCTAAACAGAACAACCAAAAAGAAGACGAAGAA AAAAAAAACCAG AAAA AAAAAAGAACTAAGACAACTCAAATTGCATCTCTCCCCCCACTTGTCTGTCTGTCCACCTGATTCATGTTTAAGAGCGTGTGTCCAAGCAAGCCGTGCGCGTGCGGCTCGTAGTGAAAAAGAGGCGGCGTTAGCAGGCGGTTTAAAGGGCTACAAAATTAAGTCATAATAGAGAGCATGTGTGATGTTGATGGGATGTTTTTTCCGTTTTTTTCGATATTTAAATAATAATAATTATAATAATAATATAAAACAGAGCATTACTGGAGACAGGTACACAGCAAG]
consensusID : consensus_8158#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 722 fasta sequence
[CAGATCGCCCAGGTTTAAACGAAGAAAAAAAAAACAAGAAAAAAAAAGAACTAAGTACAACTCAAATTGCATCTCTCCCCCCANTTGTCTGTCTGTCCACCTGGATTCATGTTTAAGAGCGTGTGTCCAAGCAAGCCGTGCGCGTGCGGTCGTAGTGAAAAAGAGGCGGCGTTAGCAGGCGGTTTAAAGGGCTACAAAATTAAGTCATAATAGAGAGCATGTGTGATGTTGATGGGATGTTTTATTCCGTTTTTTTCGATATTTAAATAATAATAATTATAATAATAATATAAGAACAGAGCATTACGTGGAGACAGGTACACAGCAAGAACAGCAACAACAACACACAANAAACAACAACAAACNACGAACACAANAACTTCACAGCATATTCGTANACCAAAGCANNACGAAGAAACACAAAATATATTCTTCCGCTGGTTGTANATTCCTCTATCGGATNCAGGAATACGTACGTCAAGATCGGAAGCTCAACCTCCGAACCTNCGTATGTGCCCTGCCGANCTCTGGGTTTANCAAGGAATCGGACACGTTTACACCCTTCCCGGNACTATGATAACGNTCTCGCCCGCAAGCGGTCACTCTAACNTAAGGTCCCCTCCCTCCNNTGGAGCNAGACCCCACCCATACATCACTAACCCCGCCACCCCGCACAGGTCTNGGACACCTCCGAGTCTCGCGGCAACGCGCCGCCCACAGCA]
[+] EMBL AL695839 [CAGATCGCCCAGGTTTAAACGAAGAAAAAAAAAACAAGAAAAAAAAAGAACTAAGTACAACTCAAATTGCATCTCTCCCCCCANTTGTCTGTCTGTCCACCTGGATTCATGTTTAAGAGCGTGTGTCCAAGCAAGCCGTGCGCGTGCGGTCGTAGTGAAAAAGAGGCGGCGTTAGCAGGCGGTTTAAAGGGCTACAAAATTAAGTCATAATAGAGAGCATGTGTGATGTTGATGGGATGTTTTATTCCGTTTTTTTCGATATTTAAATAATAATAATTATAATAATAATATAAGAACAGAGCATTACGTGGAGACAGGTACACAGCAAGAACAGCAACAACAACACACAANAAACAACAACAAACNACGAACACAANAACTTCACAGCATATTCGTANACCAAAGCANNACGAAGAAACACAAAATATATTCTTCCGCTGGTTGTANATTCCTCTATCGGATNCAGGAATACGTACGTCAAGATCGGAAGCTCAACCTCCGAACCTNCGTATGTGCCCTGCCGANCTCTGGGTTTANCAAGGAATCGGACACGTTTACACCCTTCCCGGNACTATGATAACGNTCTCGCCCGCAAGCGGTCACTCTAACNTAAGGTCCCCTCCCTCCNNTGGAGCNAGACCCCACCCATACATCACTAACCCCGCCACCCCGCACAGGTCTNGGACACCTCCGAGTCTCGCGGCAACGCGCCGCCCACAGCA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8158#0 GCGGATGCAGAACCCCCCTCCCGGCACGGCACTAATGTTCTTCATTCTTCGATATTTGTA 60
consensus_8158#1 ------------------------------------------------------------
consensus_8158#0 ACGACCACGCTGGACGATTTGTTGTACATAATTGTTAACGCAAACTTCTAGTCAAGTTGT 120
consensus_8158#1 ------------------------------------------------------------
consensus_8158#0 TTCCTTATTATTGTTTGCGAACTTTACGTTCAACAAACACGTTCCACGGTGAAACAACGC 180
consensus_8158#1 ------------------------------------------------------------
consensus_8158#0 CCTACAAATCGATTGAAATGAATGCGACGAAAGCAATCGTTAGCGCTGAAGAAATATCGA 240
consensus_8158#1 ------------------------------------------------------------
consensus_8158#0 CCGTGTGTGTCCGACCTATTGTTTTGTGGAATGAAGCTGAAATGAAACGGAACATTCACG 300
consensus_8158#1 ------------------------------------------------------------
consensus_8158#0 GCTAAGCTGCAATCGAACTTACGGTTCGTGCGCAAGAAGACAGGCCAGCTTGAGAAGGGA 360
consensus_8158#1 ------------------------------------------------------------
consensus_8158#0 AACATTTAACATTGTAGTAACATAAAATGGTAATCATAAAACAGCAAACTGCACCGAGCG 420
consensus_8158#1 ----------------------------------CAGATCGCCCAGGTTTAAACGAAGAA 26
** * * * ** **
consensus_8158#0 ATGAGATAGACGCAAACATTGAAACTAAGAGCACTACTGTTGATATATTTCTATTACGCA 480
consensus_8158#1 AAAAAAAACAAGAAAAAAAAAGAACTAAGTACAACTCAAATTGCATCTCTCC-CCCCANT 85
* * * * * * *** * ******* ** * * ** * ** *
consensus_8158#0 GAACCAGAACCCCCCCCCCCTCCACCCCCCAAATCACACACACAT-CTCCCCATATCCCC 539
consensus_8158#1 TGTCTGTCTGTCCACCTGGATTCATGTTTAAGAGCGTGTGTCCAAGCAAGCCGTGCGCGT 145
* ** ** * ** * * * ** * ** * *
consensus_8158#0 GCGCTCCAACATAGAGTATGTTGCCCTCAACTAGTTATT--GCGGGTGAAAATATAGGCG 597
consensus_8158#1 GCGGTCGTAGTGAAAAAGAGGCGGCGTTAGCAGGCGGTTTAAAGGGCTACAAAATTAAGT 205
*** ** * * * * * * * * * * ** *** * ** **
consensus_8158#0 CAAAATACGTCAGA-ATGCTAAAACGA-AACATGTTTAAATGGATAAGCGAATGGAACAA 655
consensus_8158#1 CATAATAGAGAGCATGTGTGATGTTGATGGGATGTTTTATTCCGTTTTTTTCGATATTTA 265
** **** * ** * ** ****** * * * * *
consensus_8158#0 AGAAACAAAAGAAAAGAACATTAAAATCTAAACTCTACATATGCACTCACGTACGAACGC 715
consensus_8158#1 AATAATAATA-ATTATAATAATAATATAAGAACAGAGCAT-TACGTGGAGACAGGTACAC 323
* ** ** * * * ** * *** ** *** *** * * * * * ** *
consensus_8158#0 AACAAAGAAACAAACAAAAAATACTAGATGTCAAATTCGAGAGCAAACTCATACTAATAA 775
consensus_8158#1 AGCAAGAACAGCAACAACAA----CACACAANAAA--CAACAACAAACN-------ACGA 370
* *** * * ***** ** * * *** * * * ***** * *
consensus_8158#0 ATACAACAAAAGAAGAAAAAAGAAACACACAAACACACATAAAGAAGAGAAAATAATCAT 835
consensus_8158#1 ACACAANAACTTCACAGCATATTCGTANACCAAAGCANNACGAAGAAACACAAAATATAT 430
* **** ** * * * * * ** ** ** * * * * ** * **
consensus_8158#0 TCTTGCACAAGTTTAACTGGTGTCTACTAGCACAAACATAATAAGCGTGTGGCAGCAATC 895
consensus_8158#1 TCTTCCGCTGGTTG---TANATTCCTCTATCGGATNCAGGA-ATACGTACGTCAA-GATC 485
**** * * *** * ** *** * * ** * * *** * ** ***
consensus_8158#0 GCAAACTGCAACCATTCCTCACATGTTCGCATCCATTTGCGAACATGCTGAACATACCAT 955
consensus_8158#1 GGAAGCT-CAACC--TCCGAACCTNCGTATGTGCCCTGCCGANCT--CTGGGTTTANCA- 539
* ** ** ***** *** ** * * * * *** * *** ** **
consensus_8158#0 TTAACAAAAGGAAACCATCTCCCCATTCACCCCGTTAAGGATAGGTTTGGAACAGCAGGG 1015
consensus_8158#1 --AGGAATCGGACACGTTTACACCCTTCCCGGNACTATGATAACGNTCTCGCCCGCAAGC 597
* ** *** ** * * ** *** * ** * * * * * *** *
consensus_8158#0 CAACGTCATTCGGCAGCAACACGCGATTGTTCAAGGGAGAGAGAAAACAAACAAACAATT 1075
consensus_8158#1 GGTCAC--TCTAACNTAAGGTCCCCTCCCTCCNNTGGAGCNAGACCCCACCCATACA--- 652
* * * * * * * * **** *** ** ** ***
consensus_8158#0 GGGTGACCAAGTCGCGAAATTATGCAAACAATTTAATCGAAGCACAGACACACATAAACA 1135
consensus_8158#1 ---TCACTAA-CCCCGCCACCCCGCACAGGTCTNGGACACCTCCGAGTCTCGCGGCAACG 708
* ** ** * ** * *** * * * * ** * * * ***
consensus_8158#0 AAACAAAAAGGAATAAAAAAAATAACAACCACACACTCTTCACTACTCTAAATGTGTAAA 1195
consensus_8158#1 CGCCGCCCAC-AGCA--------------------------------------------- 722
* * * *
consensus_8158#0 AGCTCCGCGAGATTCGAGATTGTACTGTGTGAAACTTTGGAACGATGTGACAGAAAAGGG 1255
consensus_8158#1 ------------------------------------------------------------
consensus_8158#0 GAAAGCAAAAGAAGAAAACGTGCGTTTTCGGTAGTGCTCCAATGCTAATGGTGTGGCTAA 1315
consensus_8158#1 ------------------------------------------------------------
consensus_8158#0 AGAAAGATTATTGTGCACACGTATAACTATATTTAAACGCTATCTCGTAAAACTGAAATC 1375
consensus_8158#1 ------------------------------------------------------------
consensus_8158#0 CCGCTGAACTCTCCTAAACAGAACAACCAAAAAGAAGACGAAGAAAAAAGAAACAAGAAA 1435
consensus_8158#1 ------------------------------------------------------------
consensus_8158#0 AACANAGGAACTAAGACAATCCAAATTGCATCTCTCCCCCCACTTGTCTGTCTGTCCACC 1495
consensus_8158#1 ------------------------------------------------------------
consensus_8158#0 TGATTCATGTTTAAGAGCGTGTGTCCAAGCAAGCCGTGCGCGTGCGGCTCGTAGTGAAAA 1555
consensus_8158#1 ------------------------------------------------------------
consensus_8158#0 AGAGGCGGCGTTAGCAGGCGGTTTAAAGGGCTACAAAATTAAGTCATAATAGAGAGCATG 1615
consensus_8158#1 ------------------------------------------------------------
consensus_8158#0 TGTGATGTTGATGGGATGTTTTTTCCGTTTTTTTCGATATTTAAATAATAATAATTATAA 1675
consensus_8158#1 ------------------------------------------------------------
consensus_8158#0 TAATAATATAAAACAGAGCATTACTGGAGACAGGTACACAGCAAG 1720
consensus_8158#1 ---------------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||