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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8166#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 647 fasta sequence
[CCGAAAAGATGTTGGCCACCACAACGCTGCTCCTG-TG-GGGCGTCGCGATCTCGCTGCTGCTGTACGCCCTGGTTCGGCCGCTAACTGCCCGGCCGGGCAAAAACTTCCCACCCGGGCCGCCCGGCCGGTTTCCCTTCCTGGGCGATTACGGGCTGCTGCTGCTGATCAACTATCGCCACCTGCACAAGGCGGCCCTCGTGCTGGGCGATTACTATCGCACCAAGATACTGGGCATCTCGCTGCGCGACTATCCCTCGATCGTGGTGAACGATCTGACCGTCGCGAAGGAGGTGCTGAACCGGAAGGTGTTCGATGGT-CGGCCGGATCTGTACTTGGCGCGCATCCGCGACCGGGACTACAACCGGCGCGGCATCTTCTTTACCGATGGGCCGAGCTGGAAGGAGCAGCGCTGGTTCATACTGCGCTACCTGCGCGATTACGGGTTCGGGCGTCGCTTTGCCCAGCACGAGGCGGAGGTGAACAGTGAGCTGCTGGTGCTGATCGATCTGCTGCGGTACGGGCCAAAGCACGGGCACGAGCGGGCAATCGTGCGGGACGACGGGTACGCCAAGTGTCCCAATGTGCTGTTCAGCTGCTTTGCCAACGCGTTNCTGCAGATCGTGTCCGGCGAGCGGCTGTCCCGGAGG]
[+] EMBL BM576344 [CCGAAAAGATGTTGGCCACCACAACGCTGCTCCTG TG GGGCGTCGCGATCTCGCTGCTGCTGTACGCCCTGGTTCGGCCGCTAACTGCCCGGCCGGGCAAAAACTTCCCACCCGGGCCGCCCGGCCGGTTTCCCTTCCTGGGCGATTACGGGCTGCTGCTGCTGATCAACTATCGCCACCTGCACAAGGCGGCCCTCGTGCTGGGCGATTACTATCGCACCAAGATACTGGGCATCTCGCTGCGCGACTATCCCTCGATCGTGGTGAACGATCTGACCGTCGCGAAGGAGGTGCTGAACCGGAAGGTGTTCGATGGT CGGCCGGATCTGTACTTGGCGCGCATCCGCGACCGGGACTACAACCGGCGCGGCATCTTCTTTACCGATGGGCCGAGCTGGAAGGAGCAGCGCTGGTTCATACTGCGCTACCTGCGCGATTACGGGTTCGGGCGTCGCTTTGCCCAGCACGAGGCGGAGGTGAACAGTGAGCTGCTGGTGCTGATCGATCTGCTGCGGTACGGGCCAAAGCACGGGCACGAGCGGGCAATCGTGCGGGACGACGGGTACGCCAAGTGTCCCAATGTGCTGTTCAGCTGCTTTGCCAACGCG ]
[+] EMBL BX628128 [ ATGTTGGCCACCACAACGCTGCTCCTG TG GGGCGTCGCGATCTCGCTGCTGCTGTACGCCCTGGTCCGGCCGCTAACTGCCCGGCCGGGCAAAAACTTCCCACCCGGGCCGCCCGGCCGGTTTCCCTTCCTGGGCGATTACGGGCTGCTGCTGCTGATCAACTATCGCCACCTGCACAAGGCGGCCCTCGTGCTGGGCGATTACTATCGCACCAAGATACTGGGCATCTCGCTCCGCGACTATCCCTCGATCGTGGTGAACGATCTGACCGTCGCGAAGGAGGTGCTGAACCGGAAGGTGTTCGATGGC CGGCCGGATCTGTACTTGGCGCGCATCCGCGACCGGGACTACAACCGGCGCGGCATCTTCTTTACCGATGGGCCGAGCTGGAAGGAGCAGCGCTGGTTCATACTGCGCTACCTGCGCGATTACGGGTTCGGGCGTCGCTTTGCCCAGCACGAGGCGGAGGTGAACAGTGAGCTGCTGGTGCTGATCGATCTGCTGCGGTACGGGCCGAAGTACGGACACGAGCGGGCAATCGTGCGGGACGACGGGTACGCCA ]
[+] EMBL BX622911 [ CACAACGCTGCTCCTG TG GGGCGTCGCGATCTCGCTGCTGCTGTACGCCCTGGTTCGGCCGCTAACTGCCCGGCCGGGCAAAAACTTCCCACCCGGGCCGCCCGGCCGGTTTCCCTTCCTGGGCGATTACGGGCTGCTGCTGCTGATCAACTATCGCCACCTGCACAAGGCGGCCCTCGTGCTGGGCGATTACTATCGCACCAAGATACTGGGCATCTCGCTGCGCGACTATCCCTCGATCGTGGTGAACGATCTGACCGTCGCGAAGGAGGTGCTGAACCGGAAGGTGTTCGATGGT CGGCCGGATCTGTACTTGGCGCGCATCCGCGACCGGGACTACAACCGGCGCGGCATCTTCTTTACCGATGGGCCGAGCTGGAAGGAGCAGCGCTGGTTCATACTGCGCTACCTGCGCGATTACGGGTTCGGGCGTCGCTTTGCCCAGCACGAGGCGGAGGTGAACAGTGAGCTGCTGGTGCTGATCGATCTGCTGCGGTACGGGCCAAAGCACGGGCACGAGCGGGCAATCGTGCGGGACGACGGGTACGCCAAGTGTCCCAATGTGCTGTTCAGCTGCTTTGCCAACGCGTTNCTGCAGATCGTGTCCGGCGAGCGGCTGTCCCGGAGG]
[+] EMBL BX622839 [ TCCTGATGAGGGCGTCGCGATCTCGCTGCTGCTGTACGCCCTGGTTCGGCCGCTAACTGCCCGGCCGGGCAAAAACTTCCCACCCGGGCCGCCCGGCCGGTTTCCCTTCCTGGGCGATTACGGGCTGCTGCTGCTGATCAACTATCGCCACCTGCACAAGGCGGCCCTCGTGCTGGGCGATTACTATCGCACCAAGATACTGGGCATCTCGCTGCGCGACTATCCCTCGATCGTGGTGAACGATCTGACCGTCGCGAAGGAGGTGCTGAACCGGAAGGTGTTCGATGGT CGGCCGGATCTGTACTTGGCGCGCATCCGCGACCGGGACTACAACCGGCGCGGCATCTTCTTTACCGATGGGCCGAGCTGGAAGGAGCAGCGCTGGTTCATACTGCGCTACCTGCGCGATTACGGGTTCGGGCGTCGCTTTGCCCAGCACGAGGCGGAGGTGAACAGTGAGCTGCTGGTGCTGATCGATCTGCTGCGGTACGGGCCAAAGCACGGGCACGAGCGG ]
[+] EMBL BM618115 [ CCGCTAACTGCCCGGTCGGGCAAAAACTTCCCACCCGGGCCGCCCGGCCGGTTTCCCTTCCTGGGCGATTACGGGCTGCTGCTGCTGATCAACTATCGCCACCTGCACAAGGCGGCCCTCGTGCTGGGCGATTACTATCGCACCAAGATACTGGGCATCTCGCTGCGCGACTATCCCTCGATCGTGGTGAACGATCTGACCGTCGCGAAGGAGGTGCTGAACCGGAAGGTGTTCGATGGC CGGCCGGATCTGTACTTGGCGCGCATCCGCGACCGGGAGTACAACCGGCGCGGCATCTTCTTTACCGATGGGCCGAGCTGGAAGGAGCAGCGCTGGTTCATACTGCGCTACCTGCGCGATTACGGGTTCGGGCGTCGCTTTGCCCAGCACGAGGCGGAGGTGAACAGTGAGCTGCTGGTGCTGA ]
[+] EMBL BX629175 [ AACCGGAAGGTGNTCGATGGTNTGGCCGGATCTGTACTTGGCGCGCATCCGCGACCGGGACTACAANCGGCGCGGNATCTTCTT ]
[+] EMBL BX629281 [ AACCGGAAGGTGNTCGATGGTNTGGCCGGATCTGTACTTGGCGCGCATCCGCGACCGGGACTACAANCGGCGCGGNATCTTCTT ]
consensusID : consensus_8166#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 510 fasta sequence
[AGATCCCGAGNTTAAAGATTTGGCACACAACGCTGCTCCTGTGGGGCGTGCGATCTCGCTGCTGCTGTACGCCCTGGTTCGGCCGCTAACTGCCCGGCGGGCAAAAACTTCCCACCCGGGCCGCCGGCGGTTTCCCTTCCTGGGCGATTACGGGCTGGTGGTGGTGATCCAACTATCCGGCACCTGGACAAGGGGGGCCCTCGTGCTTGGGGCGGAATTTAATAATCGAACCAAAGAATTAANTGGGGCAATTCTTCGGCTGGCGGCCGGAATAATTCCCTTCGGAATTCCGTGGGTGAAACGAATTCTTGGACCCGTCGCCGAAAGAGAGCGTTGCCTTGAACCCGGGAAGGTGTTTCGATGGTCGCGCCGGATCTTGTACCTTTGGCCGCGCATCCCGCCGACCGGGACTACAACCGGCGCGGCCATCTTTCTTTACCGATGGGCCGACGCTGGAAGGAGCCAGCGCTTGGGTTCATACCTTGCGCTACCTGCGCCGATTACGCGGGT]
[+] EMBL AL694377 [AGATCCCGAGNTTAAAGATTTGGCACACAACGCTGCTCCTGTGGGGCGTGCGATCTCGCTGCTGCTGTACGCCCTGGTTCGGCCGCTAACTGCCCGGCGGGCAAAAACTTCCCACCCGGGCCGCCGGCGGTTTCCCTTCCTGGGCGATTACGGGCTGGTGGTGGTGATCCAACTATCCGGCACCTGGACAAGGGGGGCCCTCGTGCTTGGGGCGGAATTTAATAATCGAACCAAAGAATTAANTGGGGCAATTCTTCGGCTGGCGGCCGGAATAATTCCCTTCGGAATTCCGTGGGTGAAACGAATTCTTGGACCCGTCGCCGAAAGAGAGCGTTGCCTTGAACCCGGGAAGGTGTTTCGATGGTCGCGCCGGATCTTGTACCTTTGGCCGCGCATCCCGCCGACCGGGACTACAACCGGCGCGGCCATCTTTCTTTACCGATGGGCCGACGCTGGAAGGAGCCAGCGCTTGGGTTCATACCTTGCGCTACCTGCGCCGATTACGCGGGT]
consensusID : consensus_8166#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 242 fasta sequence
[TCCCCGAGGTTACTGCTGGTGCTGATCGATCTGCTGCGGTACGGGCCAAGCACGGGCACGAGCGGGCAATCGTGCGGGACGACGGGTACGCCAAGTGTCCCAATGTGCTGTTCAGCTGCTTTGCCAACGCGTTCCTGCAGATCGTGTCCGGCGAGCGGCTGTCCCGGGAGGAGACCGGTGTGCTTTACGATACCGGCGCGAATGCGATGGTGTTCCACGGGAGGGCGATGACTACGGCACGA]
[+] EMBL AL932204 [TCCCCGAGGTTACTGCTGGTGCTGATCGATCTGCTGCGGTACGGGCCAAGCACGGGCACGAGCGGGCAATCGTGCGGGACGACGGGTACGCCAAGTGTCCCAATGTGCTGTTCAGCTGCTTTGCCAACGCGTTCCTGCAGATCGTGTCCGGCGAGCGGCTGTCCCGGGAGGAGACCGGTGTGCTTTACGATACCGGCGCGAATGCGATGGTGTTCCACGGGAGGGCGATGACTACGGCACGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8166#0 -----CCGAAA--AGATGTTGGCCACCACAACGCTGCTCCTGTGGGGCGTCGCGATCTCG 53
consensus_8166#1 AGATCCCGAGNTTAAAGATTTGGCAC-ACAACGCTGCTCCTGTGGGGCGT-GCGATCTCG 58
consensus_8166#2 --TCCCCGAGGTTACTG--CTGGTGC--TGATCGATCTGCTGCGGTACGGGCCAAGCACG 54
**** * * * * ** *** ** ** * * * **
consensus_8166#0 CTGCTGCTGTACGCCCTGGTTCGGCCGCTAACTGCCCGGCCGGGCAAAAACTTCCCACCC 113
consensus_8166#1 CTGCTGCTGTACGCCCTGGTTCGGCCGCTAACTGCCCGGC-GGGCAAAAACTTCCCACCC 117
consensus_8166#2 G-------GCACGAGCGGGCAATCGTGCGGGACGACGGGT-ACGCCAAGTGTCCCAA--T 104
* *** * ** ** * * ** ** ** * ** *
consensus_8166#0 GGGCCGCCCGGCCGGTTTCCCTTCCTGGGCGATTACGGGCTGCTGCTGCTGATC-AACTA 172
consensus_8166#1 GGGCCGCCGG--CGGTTTCCCTTCCTGGGCGATTACGGGCTGGTGGTGGTGATCCAACTA 175
consensus_8166#2 GTGCTGTTCAGCTGCTTTGCCAACGCGTTC--CTGCAGATCGTGTCCGGCGAGC-GGCTG 161
* ** * * *** ** * * * * * * * * ** * **
consensus_8166#0 TC-GCCACCTGCACAAGGCGG-CCCTCGTGCT--GGGCG-A----TTACTATCGCACCAA 223
consensus_8166#1 TCCGGCACCTGGACAAGGGGGGCCCTCGTGCTTGGGGCG-GAATTTAATAATCGAACCAA 234
consensus_8166#2 TCCCGGGAGGAGACCGGTGTG--CTTTACGATACCGGCGCGAATGCGATGGT-GTTCCAC 218
** ** * * * * * * **** * * * ***
consensus_8166#0 GATACT-----GGGCATCTC--------GCTGCGCGACTA---TCCCTCGA----TCGTG 263
consensus_8166#1 AGAATTAANTGGGGCAATTCTTCGGCTGGCGGCCGGAATAATTCCCTTCGGAATTCCGTG 294
consensus_8166#2 GGGA-------GGGCGATGACT------ACGGCACGA----------------------- 242
* **** * ** **
consensus_8166#0 GT--GAACGATCT-----GACCGTCGC-GAAGGAG------GTGCTGAACC--GGAAGGT 307
consensus_8166#1 GGTGAAACGAATTCTTGGACCCGTCGCCGAAAGAGAGCGTTGCCTTGAACCCGGGAAGGT 354
consensus_8166#2 ------------------------------------------------------------
consensus_8166#0 GTT-CGATGGTCG-GCCGGATCT-GTACTT---GGCGCGCATCCG--CGACCGGGACTAC 359
consensus_8166#1 GTTTCGATGGTCGCGCCGGATCTTGTACCTTTGGCCGCGCATCCCGCCGACCGGGACTAC 414
consensus_8166#2 ------------------------------------------------------------
consensus_8166#0 AACCGGCGCGGC-ATCTT-CTTTACCGATGGGCCGA-GCTGGAAGGAGC-AGCGCT--GG 413
consensus_8166#1 AACCGGCGCGGCCATCTTTCTTTACCGATGGGCCGACGCTGGAAGGAGCCAGCGCTTGGG 474
consensus_8166#2 ------------------------------------------------------------
consensus_8166#0 TTCATAC--TGCGCTACCTGCGC-GATTACGGGTTCGGGCGTCGCTTTGCCCAGCACGAG 470
consensus_8166#1 TTCATACCTTGCGCTACCTGCGCCGATTACG----CGGGT-------------------- 510
consensus_8166#2 ------------------------------------------------------------
consensus_8166#0 GCGGAGGTGAACAGTGAGCTGCTGGTGCTGATCGATCTGCTGCGGTACGGGCCAAAGCAC 530
consensus_8166#1 ------------------------------------------------------------
consensus_8166#2 ------------------------------------------------------------
consensus_8166#0 GGGCACGAGCGGGCAATCGTGCGGGACGACGGGTACGCCAAGTGTCCCAATGTGCTGTTC 590
consensus_8166#1 ------------------------------------------------------------
consensus_8166#2 ------------------------------------------------------------
consensus_8166#0 AGCTGCTTTGCCAACGCGTTNCTGCAGATCGTGTCCGGCGAGCGGCTGTCCCGGAGG 647
consensus_8166#1 ---------------------------------------------------------
consensus_8166#2 ---------------------------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||