cluster # 817

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Anopheles gambiae
cluster # 817 cluster # 817 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_817#0 length = 649 sequences # 1

consensus_817#1 length = 454 sequences # 1

consensusID : consensus_817#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 649
fasta sequence

                              [CCGGCCACGCCCAGTGGGGGAGAGGTCGGAAAAGTGCCCGAAAGCGTACAGCAGGACCCATTCCTGGAGGCGGCAGAAAAATCAAACGATGCAAAGGATGCACAGGAAGTGAGTGACAGCAACGTGAATGGTAAAATTGTCGATAGCACACAAACAGTAGCCGATGTACCGACCGCTGTACCTTCCGAGAACGAAACCATGGCAGCCGCGGATAGTGCCGTCGAACGAAAGGAAGCTGGTGGTAGCACAGAGGAGAAAGCAGCTAGTCCAGCCACTTGCACCGACGTCGAAAAGTCCGAAGCGGCAAATGGAGATGAAAGCACTAACAGCAGCAGCAGCAGCATGACCCCGAAAGAGGAGGCAAGCAACAGTGCTGCAAGCTCCTCGACCGCAACGGCAGCAGCAGCGCCTGCACCAGCAACAGTGCCAGAATCCGCACCAGCATCGGTAGACGAGACTGCCGCCAGCACAGCAGCACCCACCGTTGAGGCGACAGCAGCTACCAGCGACAGCAGCTCCGCGGCCGATGCGAGCGATACAAGCGGCTCACCGGATAATTGAGGGTGTCCGCCGCCGTGTCGTTGCCAACGGGATCCCCCACCATCGCCACACCGACGCCAAAACGCACGCGCACCAGACCGAAACGGCC]

[+] EMBL BM617347             [CCGGCCACGCCCAGTGGGGGAGAGGTCGGAAAAGTGCCCGAAAGCGTACAGCAGGACCCATTCCTGGAGGCGGCAGAAAAATCAAACGATGCAAAGGATGCACAGGAAGTGAGTGACAGCAACGTGAATGGTAAAATTGTCGATAGCACACAAACAGTAGCCGATGTACCGACCGCTGTACCTTCCGAGAACGAAACCATGGCAGCCGCGGATAGTGCCGTCGAACGAAAGGAAGCTGGTGGTAGCACAGAGGAGAAAGCAGCTAGTCCAGCCACTTGCACCGACGTCGAAAAGTCCGAAGCGGCAAATGGAGATGAAAGCACTAACAGCAGCAGCAGCAGCATGACCCCGAAAGAGGAGGCAAGCAACAGTGCTGCAAGCTCCTCGACCGCAACGGCAGCAGCAGCGCCTGCACCAGCAACAGTGCCAGAATCCGCACCAGCATCGGTAGACGAGACTGCCGCCAGCACAGCAGCACCCACCGTTGAGGCGACAGCAGCTACCAGCGACAGCAGCTCCGCGGCCGATGCGAGCGATACAAGCGGCTCACCGGATAATTGAGGGTGTCCGCCGCCGTGTCGTTGCCAACGGGATCCCCCACCATCGCCACACCGACGCCAAAACGCACGCGCACCAGACCGAAACGGCC]




>consensus_817#0
CCGGCCACGCCCAGTGGGGGAGAGGTCGGAAAAGTGCCCGAAAGCGTACAGCAGGACCCA
TTCCTGGAGGCGGCAGAAAAATCAAACGATGCAAAGGATGCACAGGAAGTGAGTGACAGC
AACGTGAATGGTAAAATTGTCGATAGCACACAAACAGTAGCCGATGTACCGACCGCTGTA
CCTTCCGAGAACGAAACCATGGCAGCCGCGGATAGTGCCGTCGAACGAAAGGAAGCTGGT
GGTAGCACAGAGGAGAAAGCAGCTAGTCCAGCCACTTGCACCGACGTCGAAAAGTCCGAA
GCGGCAAATGGAGATGAAAGCACTAACAGCAGCAGCAGCAGCATGACCCCGAAAGAGGAG
GCAAGCAACAGTGCTGCAAGCTCCTCGACCGCAACGGCAGCAGCAGCGCCTGCACCAGCA
ACAGTGCCAGAATCCGCACCAGCATCGGTAGACGAGACTGCCGCCAGCACAGCAGCACCC
ACCGTTGAGGCGACAGCAGCTACCAGCGACAGCAGCTCCGCGGCCGATGCGAGCGATACA
AGCGGCTCACCGGATAATTGAGGGTGTCCGCCGCCGTGTCGTTGCCAACGGGATCCCCCA
CCATCGCCACACCGACGCCAAAACGCACGCGCACCAGACCGAAACGGCC

consensusID : consensus_817#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 454
fasta sequence

                              [CCGGAAAAATCGACCGAAGCAAAGGATGCACAGGAAGTGAGTGACAGCAATGTGAATGATAAAGTTGTCGATAGCACTCAAACAGTAGCCGATGTGCCGACCGCTGTACCTTCCGATAATGAAACCATGGCAGCCGCGGACAGTGCCGTCGAACGAAAGGAAGCTGTTGGTAGCACAGAGGAGAAAGCAGCTAGTCTAGCCACTTGCACCGACGTCGAAAAGTCCGAAGCGGTAAATGGAGATGAAAGCAATAGCAGCAGCAGCAGCATGACCCCGAAAGAGGAGGTAAGCAACAGTGCTGCAAGCTCCTTGTCCGTAACTGCAGCAGCAACGCCTGCACCAGCAACAGTGGCAGAATCCGCACCAGCATCGGTAGAAGAGACTGCCGCCAGCACAGCAGCACCCACCGTTGAGGCGACAGCAGCTACCAGCGACAGCAGCAGCAGCTCCGCAG]

[+] EMBL BM637182             [CCGGAAAAATCGACCGAAGCAAAGGATGCACAGGAAGTGAGTGACAGCAATGTGAATGATAAAGTTGTCGATAGCACTCAAACAGTAGCCGATGTGCCGACCGCTGTACCTTCCGATAATGAAACCATGGCAGCCGCGGACAGTGCCGTCGAACGAAAGGAAGCTGTTGGTAGCACAGAGGAGAAAGCAGCTAGTCTAGCCACTTGCACCGACGTCGAAAAGTCCGAAGCGGTAAATGGAGATGAAAGCAATAGCAGCAGCAGCAGCATGACCCCGAAAGAGGAGGTAAGCAACAGTGCTGCAAGCTCCTTGTCCGTAACTGCAGCAGCAACGCCTGCACCAGCAACAGTGGCAGAATCCGCACCAGCATCGGTAGAAGAGACTGCCGCCAGCACAGCAGCACCCACCGTTGAGGCGACAGCAGCTACCAGCGACAGCAGCAGCAGCTCCGCAG]




>consensus_817#1
CCGGAAAAATCGACCGAAGCAAAGGATGCACAGGAAGTGAGTGACAGCAATGTGAATGAT
AAAGTTGTCGATAGCACTCAAACAGTAGCCGATGTGCCGACCGCTGTACCTTCCGATAAT
GAAACCATGGCAGCCGCGGACAGTGCCGTCGAACGAAAGGAAGCTGTTGGTAGCACAGAG
GAGAAAGCAGCTAGTCTAGCCACTTGCACCGACGTCGAAAAGTCCGAAGCGGTAAATGGA
GATGAAAGCAATAGCAGCAGCAGCAGCATGACCCCGAAAGAGGAGGTAAGCAACAGTGCT
GCAAGCTCCTTGTCCGTAACTGCAGCAGCAACGCCTGCACCAGCAACAGTGGCAGAATCC
GCACCAGCATCGGTAGAAGAGACTGCCGCCAGCACAGCAGCACCCACCGTTGAGGCGACA
GCAGCTACCAGCGACAGCAGCAGCAGCTCCGCAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_817#0      CCGGCCACGCCCAGTGGGGGAGAGGTCGGAAAAGTGCCCGAAAGCGTACAGCAGGACCCA 60
consensus_817#1      ------------------------------------------------------------
                                                                                 

consensus_817#0      TTCCTGGAGGCGGCAGAAAAATCAAACGATGCAAAGGATGCACAGGAAGTGAGTGACAGC 120
consensus_817#1      ------------CCGGAAAAATCGACCGAAGCAAAGGATGCACAGGAAGTGAGTGACAGC 48
                                  * ******** * *** ******************************

consensus_817#0      AACGTGAATGGTAAAATTGTCGATAGCACACAAACAGTAGCCGATGTACCGACCGCTGTA 180
consensus_817#1      AATGTGAATGATAAAGTTGTCGATAGCACTCAAACAGTAGCCGATGTGCCGACCGCTGTA 108
                     ** ******* **** ************* ***************** ************

consensus_817#0      CCTTCCGAGAACGAAACCATGGCAGCCGCGGATAGTGCCGTCGAACGAAAGGAAGCTGGT 240
consensus_817#1      CCTTCCGATAATGAAACCATGGCAGCCGCGGACAGTGCCGTCGAACGAAAGGAAGCTGTT 168
                     ******** ** ******************** ************************* *

consensus_817#0      GGTAGCACAGAGGAGAAAGCAGCTAGTCCAGCCACTTGCACCGACGTCGAAAAGTCCGAA 300
consensus_817#1      GGTAGCACAGAGGAGAAAGCAGCTAGTCTAGCCACTTGCACCGACGTCGAAAAGTCCGAA 228
                     **************************** *******************************

consensus_817#0      GCGGCAAATGGAGATGAAAGCACTAACAGCAGCAGCAGCAGCATGACCCCGAAAGAGGAG 360
consensus_817#1      GCGGTAAATGGAGATGAAAGC---AATAGCAGCAGCAGCAGCATGACCCCGAAAGAGGAG 285
                     **** ****************   ** *********************************

consensus_817#0      GCAAGCAACAGTGCTGCAAGCTCCTCGACCGCAACGGCAGCAGCAGCGCCTGCACCAGCA 420
consensus_817#1      GTAAGCAACAGTGCTGCAAGCTCCTTGTCCGTAACTGCAGCAGCAACGCCTGCACCAGCA 345
                     * *********************** * *** *** ********* **************

consensus_817#0      ACAGTGCCAGAATCCGCACCAGCATCGGTAGACGAGACTGCCGCCAGCACAGCAGCACCC 480
consensus_817#1      ACAGTGGCAGAATCCGCACCAGCATCGGTAGAAGAGACTGCCGCCAGCACAGCAGCACCC 405
                     ****** ************************* ***************************

consensus_817#0      ACCGTTGAGGCGACAGCAGCTACCAGCGACAGCAGCTCCGCGGCCGATGCGAGCGATACA 540
consensus_817#1      ACCGTTGAGGCGACAGCAGCTACCAGCGACAGCAGCAGCAGCTCCGCAG----------- 454
                     ************************************  *    ***  *           

consensus_817#0      AGCGGCTCACCGGATAATTGAGGGTGTCCGCCGCCGTGTCGTTGCCAACGGGATCCCCCA 600
consensus_817#1      ------------------------------------------------------------
                                                                                 

consensus_817#0      CCATCGCCACACCGACGCCAAAACGCACGCGCACCAGACCGAAACGGCC 649
consensus_817#1      -------------------------------------------------