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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8173#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 902 fasta sequence
[CTCAAACGCTGCGGAATTCCTCGAGAACTGTTGGCCCACTGGAAAAAACAACGTTGTTTACGAATACCGACTGCACGCCGTCGAAACTGGTGATCGTGATTGGAAGGTGAATTAAATTGAAACAATAACTAT----CAGTTCTTTCCAGTAATTTACCCCCCAAGCCTTCAGTATGGTGCGCCGGTTAAGAAAAACCAAGAAAAACCAGAAATATAACTACAACTGCAATAGAAAGCGTTTGGGCAAGAAAAATCGTCGAAATGGACACATCAACGATCCCGAAATTCGTGCGGCCTACGACGAGAAGAAGAAACCAGCTAACAACATTCGCGAAATGGGCCTGGCGTACGATGTGAACCGTGCCATACCAATCCCGAACGTGAAGCAGCAAATCAAAGCGATGGAGTTGGAGCTATCCGGACAGAAAGCACGCCCGTCCAGGGGGAATTCGAGCAAGGAACAGCCGAAACAATACGTGGCCGCACGTCTGGAGGAGGATGCGAATGAATACGCCGGTTCGCGGTTCCGCATGGCTCGGTCGATGGTGCGCGTCATCACGGATATGATCGATCGGCACGGATTCAACTACAAAGCGATGTCACTCGATTGGCGCAACTACGAGCAGGTAACGTGGCGCCAGTTTCGCACCAAGGTTCGCAAGTTTCTGCGCATTCCGGAGCAGTGTACGCCGTACCTGGAGCAGAAAGGTTGGCTCGACTGCGACATGAACGATCCGAACGATCCACGATGGAAGGAATATAGTACCGATGATGAATCGTAGTGCGTGCGATGGTAGCTTATAAGGTTGGAACAGTTGTCAATAAAAAATTTACAATGCATCGT--AATATACAGCAGTTGATCAGAAAAAAAAAAAAAAAAGGCCACATG-TGCCCGGGCGGGGGGGG]
[-] EMBL CNS09PLR [CTCAAACGCTGCGGAATTCCTCGAGAACTGTTGGCCCACTGGAAAAAACAACGTTGTTTACGAATACCCACTGCACGCCGTCGAAACTGGTGATCGTGATTGGAAGGTGAATTAAATTGAAACAATAACTAT CAGTTCTTTCCAGTAATTTACCCCCCAAGCCTTCAGTATGGTGCGCCGGTTAAGAAAAACCAAGAAAAACCAGAAATATAACTACAACTGCAATAGAAAGCGTTTGGGCAAGAAAAATCGTCGAAATGGAAACATCAACGATCCCGAAATTCGTGCGGCCTACGACGAGAAGAAGAAACCAGCTAACAAAATTCGCGAAATGGGCCTGGCGTACGATGTGAACCGTGCCATACCAATCCCGAACGTGAAGCAGCAAATCAAAGCGATGGAGTTGGAGCTATCCGGACAGAAAGAACGCCCGTCCAGGGGGAATTCGAGCAAGGGACAGCCGAAACAATACGTGGCCGCACGTCTGGAGGAGGATGCGAATGAATACGCCGGTTCGCGGTTCCGCATTGCTCGGTCGATGGTGCGCGTCATCACGGATATGATCGATCGGCACGGATTCAACTACAAAGCGGTGTTACTCAATTGGCGCAACTACGAGCAGGTAACGTGGCGCCAGTTTCGCACCAAGGTTCGCAAGTTTCTGCGCATTCCGGAGCAGTGTACGCCGTACCTGGAGCAGAAAGGTTGGCTCCACTGCAACATGAACGATCCGAACGATCCACGATGGAAGGAATATAGTACCGATGATGAATCGTAGTGCGTGCGATGGTAGCTTATAAGGTTGGGACAGTTGTCAATAAAAAATTTACAATGCATCGT AATATACAGCAGTTGATCAGAA ]
[+] EMBL CNS09PLQ [ tACTGG AAAAACAACGTTGTTTACGAATACCGACTGCACGCCGTCGAAACTGGTGATCGTGATTGGAAGGTGAATTAAATTGAAACAATAACTAT CAGTTCTTTCCAGTAATTTACCCCCCAAGCCTTCAGTATGGTGCGCCGGTTAAGAAAAACCAAGAAAAACCAGAAATATAACTACAACTGCAATAGAAAGCGTTTGGGCAAGAAAAATCGTCGAAATGGACACATCAACGATCCCGAAATTCGTGCGGCCTACGACGAGAAGAAGAAACCAGCTAACAACATTCGCGAAATGGGCCTGGCGTACGATGTGAACCGTGCCATACCAATCCCGAACGTGAAGCAGCAAATCAAAGCGATGGAGTTGGAGCTATCCGGACAGAAAGCACGCCCGTCCAGGGGGAATTCGAGCAAGGAACAGCCGAAACAATACGTGGCCGCACGTCTGGAGGAGGATGCGAATGAATACGCCGGTTCGCGGTTCCGCATGGCTCGGTCGATGGTGCGCGTCATCACGGATATGATCGATCGGCACGGATTCAACTACAAAGCGATGTCACTCGATTGGCGCAACTACGAGCAGGTAACGTGGCGCCAGTCTCGCACCAAGGTTCGCAAGTTTCTGCGCATTCCGGAGCAGTGTACGCCGTACCTGGAGCAGAAAGGTTGGCTCGACTGCGACATGAACGATCCGAACGATCCACGATGGAAGGAATATAGTACCGATGATGAATCGTAGTGCGTGCGATGGTAGCTTATAAGGTTGGAACAGTTGTCAATAAAAAATTTACAATGCATCGT AATATACAGCAGTTGATCAGAAAAAAAAAAAAAAAAGGCCACATG TGCCCGGGGGGGGGGGG]
[+] EMBL CNS09LOS [ CGAATACCGACTGCACGCCGTCGAAACTGGTGATCGTGATTGGAAGGTGAATTGAATTGAAACAATAACTAT CGGTTCTTGGCAGTAATTTACCACGAAAGCCTTCAGTATGGTGCGCCGGTTAAGAAAAACCAAGAAAAACCAGAAATATAACTACAACTGCAATAGAAAGCGTTTGGGCAAGAAAAATCGTCGAAATGGACACATCAACGATCCCGAAATTCGTGCGGCCTACGACGAGAAGAAGAAACCAGCTAACAACATTCGCGAAATGGGCCTGGCGTACGATGTGAACCACGCCATACCAATCCCGAACGTGAAGCAGCAAATCAAAGCGATGGAGTTGGAGCTATCCGGACAGAAAGCACGCCCGTCCAGGGGGAATTCGAGCAAGGAACAGCCGAAACAATACGTGGCCGCACGTCTGGAGGAGGATGCGAATGAATACGCCGGTTCGCGGTTCCGCATGGCTCGGTCGATGGTGCGCGTCATCACGGATATGATCGATCGGCACGGATTCAACTACAAAGCGATGTCACTCGATTGGCGCAACTACGAGCAGGTAACGTGGCGCCAGTATCGCACCAAGATTCGTAAGTTTCTGCGCATTCCGGAGCAGTGTACTCCGTACCTGGAGCAGAAAGGTTGGCTCGACTGCGACATGAACGATCCGAACGATCCACGATGGAAGGAATATAGTACCGATGATGAATCGTAGTGCGTGCGATGGTAGCTTATAAGGTTGAAACAATTGTCAATAAAACATTTACAATGCATCGT AA AAA A A AAAAAAAAAAAAAAAAAAGGCCACATGTTGCTCGGGC ]
[+] EMBL CNS097RB [ TGCACGCCGTCGAAACTGGTGATCGTGATTGGAAGGTGAATTAAATTGAAACAATAACTAT CAGTTCTTTCCAGTAATTTACCCCCCAAGCCTTCAGTATGGTGCGCCGGTTAAGAAAAACCAAGAAAAACCAGAAATATAACTACAACTGCAATAGAAAGCGTTTGGGCAAGAAAAATCGTCGAAATGGACACATCAACGATCCCGAAATTCGTGCGGCCTACGACGAGAAGAAGAAACCAGCTAACAACATTCGCGAAATGGGCCTGGCGTACGATGTGAACCGTGCCATACCAATCCCGAACGTGAAGCAGCAAATCAAAGCGATGGAGTTGGAGCTATCCGGACAGAAAGCACGCCCGTCCAGGGGGAATTCGAGCAAGGAACAGCCGAAACAATACGTGGCCGCACGTCTGGAGGAGGATGCGAATGAATACGCCGGTTCGCGGTTCCGCATGGCTCGGTCGATGGTGCGCGTCATCACGGATATGATCGATCGGCACGGATTCAACTACAAAGCGATGTCACTCGATTGGCGCAACTACGAGCAGGTAACGTGGCGCCAGTTTCGCACCAAGGTTCGCAAGTTTCTGCGCATTCCGGAGCAGTGTACGCCGTACCTGGAGCAGAAAGGTTGGCTCGACTGCGACATGAACGATCCGAACGATCCACGATGGAAGGAATATAGTACCGATGATGAATCGTAGTGCGTGCGATGGTAGCTTATAAGGTTGGAACAGTTGTCAATAAAAAATTTACAATGCATCGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGCCCCATG TGCCCGGGCGGG ]
[+] EMBL BX620764 [ TTGAAACAATAACTATCGGACAGTTCTTGGCAGTAATTTACCCCGAAAGCCATCAGTATGGTGCGCCGGTTAAGAAAAACCAAGAAAAACCAGAAATATAACTACAACTGCAATAGAAAGCGTTTGGGCAAGAAAAATCGTCGAAATGGACACATCAACGATCCCGAAATTCGTGCGGCCTACGACGAGAAGAAGAAACCAGCTAACAACATTCGCGAAATGGGCCTGGCGTACGATGTGAACCGCGCCATACCAATCCCGAACGTGAAGCAGCAAATCAAAGCGATGGAGTTGGAGCTATCCGGACAGAAAGCACGCCCGTCCAGGGGTAATTCGAGCAAGGAACAGCCGAAACAATACGTGGCCGCACGTCTGGAGGAGGATGCGAATGAATACGCCGGTTCGCGGTTCCGCATGGCTCGGTCGATGGTGCGCGTCATCACGGATATGATCGATCGGCACGGATTCAACTACAAAGCGATGTCACTCGATTGGCGCAACTACGAGCAGGTAACGTGGCGCCAGTTTCGCACCAAGGTTCGCAAGTTTCTGCGCATTCCGGAGCAGTGTACGCCGTACCTGGAGCAGAAAGGTTGGCTCGACTGCGACATGAACGATCCGAACGATCCACGATGGAAGGAATATAGTACCGATGATGAATCGTAGTGCGTGCGATGGTAGCTTATAAGGTTGGAACNATTGTCAATAAAACATTTACAATGCATCGT Ac ]
[+] EMBL BX608449 [ CCCAAGCCTTCAGTATGGTGCGCCGGTTAAGAAAAACCAAGAAAAACCAGAAATATAACTACAACTGCAATAGAAAGCGTTTGGGCAAGAAAAATCGTCGAAATGGACACATCAACGATCCCGAAATTCGTGCGGCCTACGACGAGAAGAAGAAACCAGCTAACAACATTCGCGAAATGGGCCTGGCGTACGATGTGAACCGTGCCATACCAATCCCGAACGTGAAGCAGCAAATCAAAGCGATGGAGTTGGAGCTATCCGGACAGAAAGCACGCCCGTCCAGGGGGAATTCGAGCAAGGAACAGCCGAAACAATACGTGGCCGCACGTCTGGAGGAGGATGCGAATGAATACGCCGGTTCGCGGTTCCGCATGGCTCGGTCGATGGTGCGCGTCATCACGGATATGATCGATCGGCACGGATTCAACTACAAAGCGATGTCACTCGATTGGCGCAACTACGAGCAGGTAACGTGGCGCCAGTTTCGCACCAAGGTTCGCAAGTTTCTGCGCATTCCGGAGCAGTGTACGCCGTACCTGGAGCAGAAAGGTTGGCTCGACTGCGACATGAACGATCCGAACGATCCACGATGGAAGGAATATAGTACCGATGATGAATCGTAGTGCGTGCGATGGTAGCTTATAAGGTTGGAACAGTTGTCAATAAAAAATTTAC ]
consensusID : consensus_8173#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 521 fasta sequence
[CGAGCAGATGCCCGCAGGTTGATGGAGGTGAATGAATTGAACATACTATCTGGACAGTTCTTGGCAGTATTTACCCGAAAGCATCAGTATGGTGCGCCGGTTAAGAAAAACAAGAAAAACCAGAAATATAACTACAACTGCANTAGAAAGCGTTTGGGCAAGAAAAATCGTCGAAATGGACACATCAACGATCCCGAAATTCGTGCGGCTACGACGAGAAGAAGAAACCAGCTAACAACATTCGCGAAATGGGCCTGGCGTACGATGTGAACCGGCCATACCAATCCCGAACGTGAAGCAGCAAATCAAAGCGATGGAGTTGGAGGCTATCCGGACCAGAAAAGCACGCCCGTCCAGGGGTAAATTCGAGCAAGGAACAGCCGCAACAATACGTGGCCGCACCGTCTGGAGGAGGATGCCAATGAATACGCCGGTTTCGCGGTTCCGCATGGCTCGGTCGATGGTGCGCGTCATCACCGGATATGATCGATCGGCACGGATTCACACTACAAAGCGATTGT]
[+] EMBL AL696876 [CGAGCAGATGCCCGCAGGTTGATGGAGGTGAATGAATTGAACATACTATCTGGACAGTTCTTGGCAGTATTTACCCGAAAGCATCAGTATGGTGCGCCGGTTAAGAAAAACAAGAAAAACCAGAAATATAACTACAACTGCANTAGAAAGCGTTTGGGCAAGAAAAATCGTCGAAATGGACACATCAACGATCCCGAAATTCGTGCGGCTACGACGAGAAGAAGAAACCAGCTAACAACATTCGCGAAATGGGCCTGGCGTACGATGTGAACCGGCCATACCAATCCCGAACGTGAAGCAGCAAATCAAAGCGATGGAGTTGGAGGCTATCCGGACCAGAAAAGCACGCCCGTCCAGGGGTAAATTCGAGCAAGGAACAGCCGCAACAATACGTGGCCGCACCGTCTGGAGGAGGATGCCAATGAATACGCCGGTTTCGCGGTTCCGCATGGCTCGGTCGATGGTGCGCGTCATCACCGGATATGATCGATCGGCACGGATTCACACTACAAAGCGATTGT]
consensusID : consensus_8173#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 482 fasta sequence
[CCNAGGTTNTGTCGAAACTGGTGATCGTGATTGGAGTGTGAATTGAATTGAAACAATAACTATCGGTTCTTGGCAGTAATTTACCCCGAAAGCCATCAGTATGGTGCGCCGGTTAAGAAAAACCAAGAAAAACCAGAAATATAACTACAACTGCAATAGAAAGCGTTTGGGCAAGAAAAATCGTCGAAATGGACACATCAACGATCCCGAAATTCGTGCGGCCTACGACGAGAAGAAGAAACCAGCTAACAACATTCGCGAAATGGGCCTGGCGTACGATGTGAACCGCGCCATACCAATCCCGAACGTGAAGCAGCAAATCAAAGCGATGGAGTTGGAGCTATCCGGACAGAAAGCACGCCCGTCCAGGGGTAATTCGAGCAAGGAACAGCCGAAACAATACGTGGCCGCACGTCTGGAGGAGGATGCGAATGAATACGCCGGTTCGCGGTTCCGCATGGCTCGGTCGATGGTGCGCGTCA]
[+] EMBL AL692976 [CCNAGGTTNTGTCGAAACTGGTGATCGTGATTGGAGTGTGAATTGAATTGAAACAATAACTATCGGTTCTTGGCAGTAATTTACCCCGAAAGCCATCAGTATGGTGCGCCGGTTAAGAAAAACCAAGAAAAACCAGAAATATAACTACAACTGCAATAGAAAGCGTTTGGGCAAGAAAAATCGTCGAAATGGACACATCAACGATCCCGAAATTCGTGCGGCCTACGACGAGAAGAAGAAACCAGCTAACAACATTCGCGAAATGGGCCTGGCGTACGATGTGAACCGCGCCATACCAATCCCGAACGTGAAGCAGCAAATCAAAGCGATGGAGTTGGAGCTATCCGGACAGAAAGCACGCCCGTCCAGGGGTAATTCGAGCAAGGAACAGCCGAAACAATACGTGGCCGCACGTCTGGAGGAGGATGCGAATGAATACGCCGGTTCGCGGTTCCGCATGGCTCGGTCGATGGTGCGCGTCA]
[-] EMBL CNS097RC [ GCAATAGAAAGCGTTTGGGCAAGAAAAATCGTCGAAATGGAAACATCAACGATCCCGAAATTCGTGCGGCCTACGACGAGAAGAAAAAACCAGCTAACAAAATTCGCGAAATGGGCCTGGCGT ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8173#0 CTCAAACGCTGCGGAATTCCTCGAGAACTGTTGGCCCACTGGAAAAAACAACGTTGTTTA 60
consensus_8173#2 ------------------------------------------------------------
consensus_8173#1 ------------------------------------------------------------
consensus_8173#0 CGAATACCGACTGCACGCCGTCGAAACTGGTGATCGT-GATTG--GAAGGTGAATTAAAT 117
consensus_8173#2 ---------CCNAGGTTNTGTCGAAACTGGTGATCGT-GATTG--GAGTGTGAATTGAAT 48
consensus_8173#1 ----------------------CGAGCAGATGCCCGCAGGTTGATGGAGGTGAATGAATT 38
* * * ** ** * *** * ****** * *
consensus_8173#0 TGAAACAATAACTAT-CAGTTCTTTCCAGTAATTTACCCCCCAAGCCTTCAGTATGGTGC 176
consensus_8173#2 TGAAACAATAACTAT-CGGTTCTTGGCAGTAATTTACCCCGAAAGCCATCAGTATGGTGC 107
consensus_8173#1 GAACATACTATCTGGACAGTTCTTGGCAGTA-TTTACCC--GAAAGCATCAGTATGGTGC 95
* * * ** ** * ****** ***** ******* ** * ************
consensus_8173#0 GCCGGTTAAGAAAAACCAAGAAAAACCAGAAATATAACTACAACTGCAATAGAAAGCGTT 236
consensus_8173#2 GCCGGTTAAGAAAAACCAAGAAAAACCAGAAATATAACTACAACTGCAATAGAAAGCGTT 167
consensus_8173#1 GCCGGTTAAGAAAAAC-AAGAAAAACCAGAAATATAACTACAACTGCANTAGAAAGCGTT 154
**************** ******************************* ***********
consensus_8173#0 TGGGCAAGAAAAATCGTCGAAATGGACACATCAACGATCCCGAAATTCGTGCGGCCTACG 296
consensus_8173#2 TGGGCAAGAAAAATCGTCGAAATGGACACATCAACGATCCCGAAATTCGTGCGGCCTACG 227
consensus_8173#1 TGGGCAAGAAAAATCGTCGAAATGGACACATCAACGATCCCGAAATTCGTGCGGC-TACG 213
******************************************************* ****
consensus_8173#0 ACGAGAAGAAGAAACCAGCTAACAACATTCGCGAAATGGGCCTGGCGTACGATGTGAACC 356
consensus_8173#2 ACGAGAAGAAGAAACCAGCTAACAACATTCGCGAAATGGGCCTGGCGTACGATGTGAACC 287
consensus_8173#1 ACGAGAAGAAGAAACCAGCTAACAACATTCGCGAAATGGGCCTGGCGTACGATGTGAACC 273
************************************************************
consensus_8173#0 GTGCCATACCAATCCCGAACGTGAAGCAGCAAATCAAAGCGATGGAGTTGGAG-CTATCC 415
consensus_8173#2 GCGCCATACCAATCCCGAACGTGAAGCAGCAAATCAAAGCGATGGAGTTGGAG-CTATCC 346
consensus_8173#1 G-GCCATACCAATCCCGAACGTGAAGCAGCAAATCAAAGCGATGGAGTTGGAGGCTATCC 332
* *************************************************** ******
consensus_8173#0 GGAC--AGAAAGCACGCCCGTCCAGGGGGAA-TTCGAGCAAGGAACAGCCGAAACAATAC 472
consensus_8173#2 GGAC--AGAAAGCACGCCCGTCCAGGGGTAA-TTCGAGCAAGGAACAGCCGAAACAATAC 403
consensus_8173#1 GGACCAGAAAAGCACGCCCGTCCAGGGGTAAATTCGAGCAAGGAACAGCCGCAACAATAC 392
**** ******************** ** ******************* ********
consensus_8173#0 GTGGCCGCAC-GTCTGGAGGAGGATGCGAATGAATACGCCGGTT-CGCGGTTCCGCATGG 530
consensus_8173#2 GTGGCCGCAC-GTCTGGAGGAGGATGCGAATGAATACGCCGGTT-CGCGGTTCCGCATGG 461
consensus_8173#1 GTGGCCGCACCGTCTGGAGGAGGATGCCAATGAATACGCCGGTTTCGCGGTTCCGCATGG 452
********** **************** **************** ***************
consensus_8173#0 CTCGGTCGATGGTGCGCGTCATCAC-GGATATGATCGATCGGCACGGATTCA-ACTACAA 588
consensus_8173#2 CTCGGTCGATGGTGCGCGTCA--------------------------------------- 482
consensus_8173#1 CTCGGTCGATGGTGCGCGTCATCACCGGATATGATCGATCGGCACGGATTCACACTACAA 512
*********************
consensus_8173#0 AGCGATGTCACTCGATTGGCGCAACTACGAGCAGGTAACGTGGCGCCAGTTTCGCACCAA 648
consensus_8173#2 ------------------------------------------------------------
consensus_8173#1 AGCGATTGT--------------------------------------------------- 521
consensus_8173#0 GGTTCGCAAGTTTCTGCGCATTCCGGAGCAGTGTACGCCGTACCTGGAGCAGAAAGGTTG 708
consensus_8173#2 ------------------------------------------------------------
consensus_8173#1 ------------------------------------------------------------
consensus_8173#0 GCTCGACTGCGACATGAACGATCCGAACGATCCACGATGGAAGGAATATAGTACCGATGA 768
consensus_8173#2 ------------------------------------------------------------
consensus_8173#1 ------------------------------------------------------------
consensus_8173#0 TGAATCGTAGTGCGTGCGATGGTAGCTTATAAGGTTGGAACAGTTGTCAATAAAAAATTT 828
consensus_8173#2 ------------------------------------------------------------
consensus_8173#1 ------------------------------------------------------------
consensus_8173#0 ACAATGCATCGTAATATACAGCAGTTGATCAGAAAAAAAAAAAAAAAAGGCCACATGTGC 888
consensus_8173#2 ------------------------------------------------------------
consensus_8173#1 ------------------------------------------------------------
consensus_8173#0 CCGGGCGGGGGGGG 902
consensus_8173#2 --------------
consensus_8173#1 --------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||