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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8177#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1482 fasta sequence
[CAGAATCCCCCGCAGGTTAATGCNAGCATGCAGCTCCTACTGGCAGTGTTGCTTTCCTGTCAGCTTTTCCAGCATTGTGTTTGCCTGATGTAGTTACTGTACATCAGTGTAATGCAANGACCTGCTACCAGTAGCGGTCGATGTGACCTGGATGTCTGGACAGCACCTGTGTGAACTACCCAATGGTGACATGTGATGCTGGCCTGTTCTCGTCGACTTTACTGTGCCTGATCTGACACCTGACTGGCCTGGTGCCCTGAAATGTGCACTGCTAGCTTTTGGGTTGCGNAGGTTGACTGTGTACCTGTTCCGAGCTTGCCCAGACTGCATCTGGACACAGATTGGCTTTGCCAGGTTGGCTTGTACGTGGGGTGCATTGTGCCCAGGTGTCACTGGGGCACGGAAGATTGTATAACGGTTACCTGACGGCTACCGTACTTAACCCATGGTTGCCTTAAGCCTTGGTGTTATTACCCTTCTCCGATTTGGAAGTTCTTCCAANCCTGTTGCGANACGCCTTGCAAACCTTTGGGGTCTTGGAATCCAAGAATTACATTCACCCACGGTTCTTNGGCCTTTAACCCCCTTTGGTTTTTGACCCCAANGGACTTTGGGGCACAANTGCCTGGACACAAACAGNGTTAAGGGTTCCGTTAAAATGAGCCCCTGGCAATGGAACAACGCAACCTGGTTATCCCTTTTTAAAAAGGTGGCACCTGTGAGGGNACTTAAGCCCAAGTCNCTGGGAAACNCCCCCCCGGGGGTTANNAACCCTTTNCCGCCCCATTTTGGGAAAAGNAGATTTTNGGGGTTTANACAAAAGTACTNCTGATCTGNACATAGAACNAATTATAACATCGACCNACAAAACGACTGATNAACATGGATNACNCACCGGACGANACCACCNAGTCAATTAAGGCAGANCCCAATCGNAGNACAGAAGCATCNAACCTCAACTGGGAGCCAACCTGCGANGNNCNNAACAGNACGACTGAACACNCAAATCAATCNTCAACGGGANGACACTANANACAACTTGNNANAGAAACAAGGTGGAAGNANAATACACCTTTNNNGNGNATACTACCCTAAGCCAATCTANNNCTNCAAACCCCAGGTAAGCCAAAAATTATACACTNATNCCACAAACNACACACCCTTTGTCACAAGGCAGNCAGTACNATANAATANANGGACCACACAATAATGTACTGATAGANTCAAAAATCANAAGNACAGGCTNACCAAGATCCTTAACGACAATCNANTNTGGCAAANCAATAGGNTCGNNAANGAAANGANCAAGCNACGCCGACANACATATTTTAGGAAAAACGNACGAGAANCNTAATAGAAANCAATAAAGGGGACACNANAACANCCAANAAAACAGGCGCACACNCATACANCGANTGAGAGAACCAAGAAACCNACAAACCACAGNTTCACNCCGAACGCACCCTAGACGAGACCCAANAN]
[+] EMBL AL692851 [CAGAATCCCCCGCAGGTTAATGCNAGCATGCAGCTCCTACTGGCAGTGTTGCTTTCCTGTCAGCTTTTCCAGCATTGTGTTTGCCTGATGTAGTTACTGTACATCAGTGTAATGCAANGACCTGCTACCAGTAGCGGTCGATGTGACCTGGATGTCTGGACAGCACCTGTGTGAACTACCCAATGGTGACATGTGATGCTGGCCTGTTCTCGTCGACTTTACTGTGCCTGATCTGACACCTGACTGGCCTGGTGCCCTGAAATGTGCACTGCTAGCTTTTGGGTTGCGNAGGTTGACTGTGTACCTGTTCCGAGCTTGCCCAGACTGCATCTGGACACAGATTGGCTTTGCCAGGTTGGCTTGTACGTGGGGTGCATTGTGCCCAGGTGTCACTGGGGCACGGAAGATTGTATAACGGTTACCTGACGGCTACCGTACTTAACCCATGGTTGCCTTAAGCCTTGGTGTTATTACCCTTCTCCGATTTGGAAGTTCTTCCAANCCTGTTGCGANACGCCTTGCAAACCTTTGGGGTCTTGGAATCCAAGAATTACATTCACCCACGGTTCTTNGGCCTTTAACCCCCTTTGGTTTTTGACCCCAANGGACTTTGGGGCACAANTGCCTGGACACAAACAGNGTTAAGGGTTCCGTTAAAATGAGCCCCTGGCAATGGAACAACGCAACCTGGTTATCCCTTTTTAAAAAGGTGGCACCTGTGAGGGNACTTAAGCCCAAGTCNCTGGGAAACNCCCCCCCGGGGGTTANNAACCCTTTNCCGCCCCATTTTGGGAAAAGNAGATTTTNGGGGTTTANACAAAAGTACTNCTGATCTGNACATAGAACNAATTATAACATCGACCNACAAAACGACTGATNAACATGGATNACNCACCGGACGANACCACCNAGTCAATTAAGGCAGANCCCAATCGNAGNACAGAAGCATCNAACCTCAACTGGGAGCCAACCTGCGANGNNCNNAACAGNACGACTGAACACNCAAATCAATCNTCAACGGGANGACACTANANACAACTTGNNANAGAAACAAGGTGGAAGNANAATACACCTTTNNNGNGNATACTACCCTAAGCCAATCTANNNCTNCAAACCCCAGGTAAGCCAAAAATTATACACTNATNCCACAAACNACACACCCTTTGTCACAAGGCAGNCAGTACNATANAATANANGGACCACACAATAATGTACTGATAGANTCAAAAATCANAAGNACAGGCTNACCAAGATCCTTAACGACAATCNANTNTGGCAAANCAATAGGNTCGNNAANGAAANGANCAAGCNACGCCGACANACATATTTTAGGAAAAACGNACGAGAANCNTAATAGAAANCAATAAAGGGGACACNANAACANCCAANAAAACAGGCGCACACNCATACANCGANTGAGAGAACCAAGAAACCNACAAACCACAGNTTCACNCCGAACGCACCCTAGACGAGACCCAANAN]
consensusID : consensus_8177#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 577 fasta sequence
[CCGCCCACGCGTCCGCCCACGCGTCCG-TTCACATTCTGACGCAAGATGCAGCTCCTAGTGGCAGTGTTGCTTTCCGTCAGCTTTTCCAGCATTGTGTTTGCCGATGTAGTTACTGTACATCAGTGTAAGCAAGGACCGCTACCAGTATCGGTCGATGTGACCGGATGTCGGACAGCACCGTGTGAACTACCCAAGGGACAGGATGCGGCCGTTCTCGTCGACTTTACGGCCGATCGACACCTGACGGCCCTGGTGCCGAAAGTGCACGCTAGCTTTGGTGGGGTGACGGTACCGTTCGAGCTGCCAGACGATCGAAAAGATGGCTGCCAGTGGCTTGTCGGTGGCGTGTGCCCAGTGTCACAGAACGAAGATGTTACGTACGAGCTACGTCTACCAGTGCTAGCTGTGTATCCTTCGATGAGTCTCACCGTGGAGCTGCAACTGGTTGATCAAGATAATACAGTTGCTACCTGTTTCCAGCTGGAAGCGAAAGTAGTCTAAGCCGCAGAACACGTTCTTACACTTTTCATTGGAGTTGAATCAAGAGTAACGAAAAGAAACATTTGCCACTTGAGAA]
[+] EMBL BM617060 [CCGCCCACGCGTCCGCCCACGCGTCCG ATCACATTCTGACGCAAGATGCAGCTCCTAGTGGCAGTGTTGCTTTCCGTCAGCTTTTCCAGCATTGTGTTTGCCGATGTAGTTACTGTACATCAGTGTAAGCAAGGACCGCTACCAGTAGCGGTCGATGTGACCGGATGTCGGACAGCACCGTGTGAACTACCCAAGGGACAGGATGCGGCCGTTCTCGTCGACTTTACGGCCGATCGACACCTGACGGCCCTGGTGCCGAAAGTGCACGCTAGCTTTGGTGGAGTGACGGTACCGTTCGAGCTGCCAGACGATCGGAAAGATGGCTGCCAGTGGCTTGTAGGGGGCATGTGCCCAGTGTCACGGGACGAAGATGTTACGTACGAGCTACGTCTACCAGTGCTAGCTGTGTATCCTTCGATGAGTCTCACCGTGGAGCTGCAACTGGTTGATCAAGATAATACAGTTGCTACC ]
[+] EMBL BM575735 [ CCGCCCACGCGTCCGTTTCACATTCCTACGCAAGATGCAGCTCCTAGTGGCAGTGTTGCTTTCCGTCAGCTTTTCCAGCATTGTGTTTGCCGATGTAGTTACTGTACATCAGTGTAAGCAAGGACCGCTACCAGTATCGGTCGATGTGACCGGATGTCGGACAGCACCGTGTGAACTACCCAAGGGGCAGGATGCGGCCGTTCTCGTCGACTTTACGGCCGATCGACACCTGACAGCCCTGGTGCCGAAAGTGCACGCTAGCTTTGGTGGGGTGACGGTACCGTTCGAGCTGCCAGACGATCGAAAAGATGGCTGCCAGTGGCTTGTCGGTGGCGTGTGCCCAGTGTCACAGAATGAAGATGTTACGTACGAGCTACGTCTACCAGTGCTAGCTGTGTATCCTTCGATGAGTCTCATCGTGGAGCTGCAACTGGTTGATCAAGATAATACAGTTGCTACCTGTTTCCAGCTGGAAGCGAAAGTAGTCTAAGCCGCAGAACACGTTCTTACACTTTTCATTGGAGTTGAATCAAGAGTAACGAAAAGAAACATTTGCCACTTGAG ]
[+] EMBL BM612174 [ CCGCCCACGCGTCCGTTTCACATTCCTACGCAAGATGCAGCTCCTAGTGGCAGTGTTGCTTTCCGTCAGCTTTTCCAGCATTGTGTTTGCCGATGTAGTTACTGTACATCAGTGTAAGCAAGGACCGCTACCAGTATCGGTCGATGTGACCGGATGTCGGACAGCACCGTGTGAACTACCCAAGGGGCAGGATGCGGCCGTTCTCGTCGACTTTACGGCCGATCGACACCTGACAGCCCTGGTGCCGAAAGTGCACGCTAGCTTTGGTGGGGTGACGGTACCGTTCGAGCTGCCAGACGATCGAAAAGATGGCTGCCAGTGGCTTGTCGGTGGCGTGTGCCCAGTGTCACAGAATGAAGATGTTACGTACGAGCTACGTCTACCAGTGCTAGCTGTGTATCCTTCGATGAGTCTCATCGTGGAGCTGCAACTGG ]
[+] EMBL BM592168 [ CCG TTCACATTCTGACGCAAGATGCAGCTCCTAGTGGCAGTGTTGGTTTCCGTCAGCTTTTCCAGCATTGTGTTTGCCGATGTAGTTACTGTACATCAGTGTAAGCAAGGACCGCTACCAGTATCGGTCGATGTGACCGGATGTCGGACAACACCGTGTGAACTACCCAAGGGACAGGATGCGGCCGTTCTCGTCGACTTTACGGCCGATCGACACCTGACGGCTTTGGTGCCGAAAGTGCACGCTAGCTTTGGTGGGGTGACGGTACCGTTCGAGCTGCCAGACGATCGAAAAGATGGCTGCCAGTGGCTTGTCGGTGGCGTGTGCCCAGTGTCACAGAACGAAGATGTTACGTACGAGCTACGTCTACCAGTGCTAGCTGTGTATCCATCGATGAGTCTCACCGTGGAGCTGCAACTGGTTGATCAAGATAATACAGTTGCTACCTGTTTCCAGCTGGAAGCGAAAGTAGTCTAAGCCGCAGAACACGTTCTTATACTTTTCATTGGAGTTGAATCAAGAGTATCGAAAA ]
[+] EMBL BM597338 [ CCG TCACATTCTGACGCAAGATGCAGCTCCTAGTGGCAGTGTTGGTTTCCGTCAGCTTTTCCAGCATTGTGTTTGCCGATGTAGTTACTGTACATCAGTGTAAGCAAGGACCGCTACCAGTATCGGTCGATGTGACCGGATGTCGGACAACACCGTGTGAACTACCCAAGGGACAGGATGCGGCCGTTCTCGTCGACTTTACGGCCGATCGACACCTGACGGCTTTGGTGCCGAAAGTGCACGCTAGCTTTGGTGGGGTGACGGTACCGTTCGAGCTGCCAGACGATCGAAAAGATGGCTGCCAGTGGCTTGTCGGTGGCGTGTGCCCAGTGTCACAGAACGAAGATGTTACGTACGAGCTACGTCTACCAGTGCTAGCTGTGTATCCATCGATGAGTCTCACCGTGGAGCTGCAACTGGTTGATCAAGATAATACAGTTGCTACCTGTTTCCAGCTGGAAGCGAAAGTAGTCTAAGCCGC ]
[+] EMBL BM597601 [ ccgATTCTGACGCAAGATGCAGCTCCTAGTGGCAGTGTTGGTTTCCGTCAGCTTTTCCAGCATTGTGTTTGCCGATGTAGTTACTGTACATCAGTGTAAGCAAGGACCGCTACCAGTATCGGTCGATGTGACCGGATGTCGGACAACACCGTGTGAACTACCCAAGGGACAGGATGCGGCCGTTCTCGTCGACTTTACGGCCGATCGACACCTGACGGCTTTGGTGCCGAAAGTGCACGCTAGCTTTGGTGGGGTGACGGTACCGTTCGAGCTGCCAGACGATCGAAAAGATGGCTGCCAGTGGCTTGTCGGTGGCGTGTGCCCAGTGTCACAGAACGAAGATGTTACGTACGAGCTACGTCTACCAGTGCTAGCTGTGTATCCATCGATGAGTCTCACCGTGGAGCTGCAACTGGTTGATCAAGATAATACAGTTGCTACCTGTTTCCAGCTGGAAGCGAAAGTAGTCTAAGCCGCAGAACACGTTCTTATACTTTTCATTGGAGTTGAATCAAGAGTATCGAAAAGAAACATTTGCCACTTGAGAA]
[+] EMBL BM602332 [ ccGACGCAAGATGCAGCTCCTAGTGGCAGTGTTGCTTTCCGTCAGCTTTTCCAGCATTGTGTTTGCCGATGTAGTTACTGTACATCAGTGTAAGCAAGGACCGCTACCAGTATCGGTCGATGTGACCGGATGTCGGACAGCACCGTGTGAACTACCCAAGGGGCAGGATGCGGCCGTTCTCGTCGACTTTACGGCCGATCGACACCTGACAGCCCTGGTGCCGAAAGTGCACGCTAGCTTTGGTGGGGTGACGGTACCGTTCGAGCTGCCAGACGATCGAAAAGATGGCTGCCAGTGGCTTGTCGGTGGCGTGTGCCCAGTGTCACAGAATGAAGATGTTACGTACGAGCTACGTCTACCAGTGCTAGCTGTGTATCCTTCGATGAGTCTCATCGTGGAGCTGCAACTGGTTGATCAAGATAATACAGTTGCTACCTGTTTCCAGCTGGAAGCGAAAGTAGTCTAAGCCGCAGAACACGTTCTTACACTTTTCATTGGAGTTGAATCAAGAGTAACGAAAAGAAACATTTGCCACTTG ]
[+] EMBL BX627878 [ ACGCAAGATGCAGCTCCTAGTGGCAGTGTTGCTTTCCGTCAGCTTTTCCAGCATTGTGTTTGCCGATGTAGTCACTGTACATCAGTGTAAGCAAGGACCGCTACCAGTAGCGGTCGATGTGACCGGATGTCGGACAGCACCGTGTGAACTACCCAAGGGACAGGATGCGGCCGTTCTCGTCGACTTTACGGCCGATCGACACCTGACGGCCCTGGTGCCGAAAGTGCACGCTAGCTTTGGTGGAGTGACGGTACCGTTCGAGCTGCCAGACGATCGGAAAGATGGCTGCCAGTGGCTTGTAGGGGGCATGTGCCCAGTGTCACGGGACGAAGATGTTACGTACGAGCTACGTCTACCAGTGCTAGCTGTGTATCCTTCGATGAGTCTCACCGTGGAGCTGCAACTGGTTGATCAAGATAATACAGTTGCTACCTGTTTCCAGCTGGAAGCGAAAGTAGTCTAAG ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8177#0 -------------------CAGAATCCCCCGCAGGTTAATGCNAGCATGCAGCTCCTACT 41
consensus_8177#1 CCGCCCACGCGTCCGCCCACGCGTCCGTTCACATTCTGACGCAAG-ATGCAGCTCCTAGT 59
* * * ** * * ** ** ************ *
consensus_8177#0 GGCAGTGTTGCTTTCCTGTCAGCTTTTCCAGCATTGTGTTTGCCTGATGTAGTTACTGTA 101
consensus_8177#1 GGCAGTGTTGCTTTCC-GTCAGCTTTTCCAGCATTGTGTTTGCC-GATGTAGTTACTGTA 117
**************** *************************** ***************
consensus_8177#0 CATCAGTGTAATGCAANGACCTGCTACCAGTAGCGGTCGATGTGACCTGGATGTCTGGAC 161
consensus_8177#1 CATCAGTGTAA-GCAAGGACC-GCTACCAGTATCGGTCGATGTGACC-GGATGTC-GGAC 173
*********** **** **** ********** ************** ******* ****
consensus_8177#0 AGCACCTGTGTGAACTACCCAATGGTGACATGTGATGCTGGCCTGTTCTCGTCGACTTTA 221
consensus_8177#1 AGCACC-GTGTGAACTACCCAAGGG----ACAGGATGC--GGCCGTTCTCGTCGACTTTA 226
****** *************** ** * ***** * * ****************
consensus_8177#0 CTGTGCCTGATCTGACACCTGACTGGCCTGGTGCCCTGAAATGTGCACTGCTAGCTTTTG 281
consensus_8177#1 C---GGCCGATC-GACACCTGACGGCCCTGGTGCC---GAAAGTGCAC-GCTAGCTTTGG 278
* * * **** ********** * ********* ** ****** ********* *
consensus_8177#0 GGTTGCGNAGGTTGACTGTGTACCTGTTCCGAGCTTGCCCAGACTGCATCTGGACACAGA 341
consensus_8177#1 -------TGGGGTGACGGTA---CCGTTC-GAGCTG--CCAGACG--ATCGAAA---AGA 320
** **** ** * **** ***** ****** *** * ***
consensus_8177#0 TTGGCTTTGCCAGGTTGGCTTGTACGTGGGGTGCATTGTGCCCAGGTGTCACTGGGGCAC 401
consensus_8177#1 TGG---CTGCCAG--TGGCTTGTCGGTGGCGTG-----TGCCCAG-TGTCAC-AGAACGA 368
* * ****** ******** **** *** ******* ****** * *
consensus_8177#0 GGAAGATTGTATAACGGTTACCTGACGGCTACCGTACTTAACCCATGGTTGCCTTAAGCC 461
consensus_8177#1 AGATG-TTACGTACGAGCTAC-----GTCTACCAGTGCTAGCT-GTGTATCCTTCGA--- 418
** * ** ** * *** * ***** ** * ** * * * *
consensus_8177#0 TTGGTGTTATTACCCTTCTCCGATTTGGAAGTTCTTCCAANCCTGTTGCGANACGCCTTG 521
consensus_8177#1 TGAGTCTCACCGTGGAGCTGCAACTGGTTGATCAAGATAATACAGTTGCTACCTGTTT-- 476
* ** * * ** * * * * * ** * ***** * * *
consensus_8177#0 CAAACCTTTGGGGTCTTGGAATCCAAGAATTACATTCACCCACGGTTCTTNGGCCTTTAA 581
consensus_8177#1 CCAGC-----------TGGAAGCGAAAG--TAGTCTAAGCCGCAGAACACGTTCTTACAC 523
* * * ***** * ** ** * * ** * * * * * *
consensus_8177#0 CCCCCTTTGGTTTTTGACCCCAANGGACTTTGGGGCACAANTGCCTGGACACAAACAGNG 641
consensus_8177#1 TTTTCATTGGAGTTGAATCAAGAGTAACGAAAAGAAACATTTGCCACTTGAGAA------ 577
* **** ** * * * ** * *** **** * **
consensus_8177#0 TTAAGGGTTCCGTTAAAATGAGCCCCTGGCAATGGAACAACGCAACCTGGTTATCCCTTT 701
consensus_8177#1 ------------------------------------------------------------
consensus_8177#0 TTAAAAAGGTGGCACCTGTGAGGGNACTTAAGCCCAAGTCNCTGGGAAACNCCCCCCCGG 761
consensus_8177#1 ------------------------------------------------------------
consensus_8177#0 GGGTTANNAACCCTTTNCCGCCCCATTTTGGGAAAAGNAGATTTTNGGGGTTTANACAAA 821
consensus_8177#1 ------------------------------------------------------------
consensus_8177#0 AGTACTNCTGATCTGNACATAGAACNAATTATAACATCGACCNACAAAACGACTGATNAA 881
consensus_8177#1 ------------------------------------------------------------
consensus_8177#0 CATGGATNACNCACCGGACGANACCACCNAGTCAATTAAGGCAGANCCCAATCGNAGNAC 941
consensus_8177#1 ------------------------------------------------------------
consensus_8177#0 AGAAGCATCNAACCTCAACTGGGAGCCAACCTGCGANGNNCNNAACAGNACGACTGAACA 1001
consensus_8177#1 ------------------------------------------------------------
consensus_8177#0 CNCAAATCAATCNTCAACGGGANGACACTANANACAACTTGNNANAGAAACAAGGTGGAA 1061
consensus_8177#1 ------------------------------------------------------------
consensus_8177#0 GNANAATACACCTTTNNNGNGNATACTACCCTAAGCCAATCTANNNCTNCAAACCCCAGG 1121
consensus_8177#1 ------------------------------------------------------------
consensus_8177#0 TAAGCCAAAAATTATACACTNATNCCACAAACNACACACCCTTTGTCACAAGGCAGNCAG 1181
consensus_8177#1 ------------------------------------------------------------
consensus_8177#0 TACNATANAATANANGGACCACACAATAATGTACTGATAGANTCAAAAATCANAAGNACA 1241
consensus_8177#1 ------------------------------------------------------------
consensus_8177#0 GGCTNACCAAGATCCTTAACGACAATCNANTNTGGCAAANCAATAGGNTCGNNAANGAAA 1301
consensus_8177#1 ------------------------------------------------------------
consensus_8177#0 NGANCAAGCNACGCCGACANACATATTTTAGGAAAAACGNACGAGAANCNTAATAGAAAN 1361
consensus_8177#1 ------------------------------------------------------------
consensus_8177#0 CAATAAAGGGGACACNANAACANCCAANAAAACAGGCGCACACNCATACANCGANTGAGA 1421
consensus_8177#1 ------------------------------------------------------------
consensus_8177#0 GAACCAAGAAACCNACAAACCACAGNTTCACNCCGAACGCACCCTAGACGAGACCCAANA 1481
consensus_8177#1 ------------------------------------------------------------
consensus_8177#0 N 1482
consensus_8177#1 -
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||