These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8193#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1273 fasta sequence [CCGCCCACGCGTCCGTCGTCTTGCCGAGTGTCCACGACCAATCGGGCACGGTAGTTGGATGGGGACTTTCGGAAGAGAATCGGCTAGGCGCGGTCCTGAACGAGGCACTCATGCCGGTAGTCGATTCGCTGACGTGTTTGGCGAGCGATCGGGCATTTTTCGGAAGATTGCTGTACTCCAAAGCATTCTGCGCCGGATACAAAAATGGGACTGGAGTGTGCAATGGAGACAGTGGGGGTGGAATGTTTTTCCAGTTTCAAAACCGGTGGTATCTGAAGGGCGTGGTTTCGTTTAGCAATACTATTGATGCTACCGGAGTGTGCAATCTAAAACAATACATCGGGTTTACGGACGCTTCGCAATACATCGACTGGTTGTACGAAAATACACCAAACAGTGGAATCGACGATCCGATACTGGGACATCCCAACATCCGCCTCATCAACCAGGGGAACTGTGGACGGAACGAGCATATATACGAGTTCGGTGAGGATCGTAAACCCATCTTTAAGCAATATCCTTGGATGGTGACACTGCGCCACCCGTTCGTTGATTCCGAGTACGTCCCCCTGTAACGGAGTCTTGCTGAATCGAAACTACGTTCTCACGACCAATTGTGTCGATTTACAGGGATGAAATCAGTGTGACACTAGGCGATTACGATACGAGCAAGACAAAGGACTGCGGCACCATAGACGGACGAGAGCAATGTGTATCCGGCGTGCAGACGGTGTCCGTGGGGCAACTATTTCGCAAAGATAATCTAGTACTAGCCCGGCTAACCGTTCCCGCTGTGATCGGTCGGCGAGATCATATTGAGTCGATCTGTCTGCCGGTGACTCCTCAGCAGCGTGAACGTCTGTACAACCGGTACATCATGACGGGCTGGAAGGAGAGTGGATCTGACGCGCGCATACTGCAACGAGCACTGCTGGAAGCAATCGACTTGAACAAGTGTCGGGCCGAATTTCAAGCATCTAGCTATGCATCCGAAGCGTCGAAGCAGATCGATAGCAGAACCATTTGCGCTCGCAATATAAACGATCCTTCCCGATCGCCGCAATGCAATGATTATCAGCCAGGATCGGCGATATAGGCCATAGAGAAGAAATCTAACCGATACTTGCTCTACGGGTTGCAGACGGGCATTAGCTACTGTTCAGTTCCAGAACAGTACATTGCTATCAGCAAGTATTTGCAATGGATCTTGGATAATATACGTGGGTAGGAAAAGCGTACCGGCTTCAGCTGGACGTAAATACTCAAAATGTAA] [+] EMBL BM581206 [CCGCCCACGCGTCCGTCGTCTTGCCGAGTGTCCACGACCAATCGGGCACGGTAGTTGGATGGGGACTTTCGGAAGAGAATCGGCTAGGCGCGGTCCTGAACGAGGCACTCATGCCGGTAGTCGATTCGCTGACGTGTTTGGCGAGCGATCGGGCATTTTTCGGAAGATTGCTGTACTCCAAAGCATTCTGCGCCGGATACAAAAATGGGACTGGAGTGTGCAATGGAGACAGTGGGGGTGGAATGTTTTTCCAGTTTCAAAACCGGTGGTATCTGAAGGGCGTGGTTTCGTTTAGCAATACTATTGATGCTACCGGAGTGTGCAATCTAAAACAATACATCGGGTTTACGGACGCTTCGCAATACATCGACTGGTTGTACGAAAATACACCAAACAGTGGAATCGACGATCCGATACTGGGACATCCCAACATCCGCCTCATCAACCAGGGGAACTGTGGACGGAACGAGCATATATACGAGTTCGGTGAGGATCGTAAACCCATCTTTAAGCAATATCCTTGGATGGTGACACTGCGCCACCCGTTCGTTGATTCCGAGTACGTCCCCCTGTAACGGAGTCTTGCTGAATCGAAACTACGTTCTCACGACCAATTGTGTCGATTTACAGGGATGAAATCAGTGTGACACTAGG ] [+] EMBL BM621868 [ ccggtTCGTCTTGCCGAGTGTCCACGACCAATCGGGCACGGTAGTTGGATGGGGACTTTCGGAAGAGAATCGGCTAGGCGCGGTCCTGAACGAAGCACTCATGCCGGTAGTCGATTCCCTGACGTGTTT ] [+] EMBL BX608813 [ CGGAGTGTGCAATCTAAAACAATACCTTGGGTTTACGGACGCTTCGCAATACATCGACTGGTTGTACGAAAATACACCAAACAGTGGAATCGACGATCCGATACTGGGACATCCCAACATCCGCCTCATCAACCAGGGGAACTGTGGACGGAACGAGCATATATACGAGTTCGGTGAGGATCGTAAACCCATCTTTAAGCAATATCCTTGGATGGTGACACTGCGCCACCCGTTCGTTGATTCCGAGTACGT CCCCTGTAACGGAGTCTTGCTGAATCGAAACTACGTTCTCACGACCAATTGTGTCGATTTACA GGATGAAATCAGTGTGACACTAGGCGATTACGATACGAGCAAGACAAAGGACTGCGGCACCATAGACGGACGAGAGCAATGTGTATCCGGCGTGCAGACTGTGTCCGTGGGGCAACTATTTCGCAAAGATAATCTAGTACTAGCCCGGCTAACCGTTCCCGCTGTGATCGGTCGGCGAGATCATATTGAGTCGATCTGTCTGCCGGTCACTCCTCAGCAGCGTGAACGTCTGTACAACCGGTACATCATGACGGGCTGGAAGGAGAGTGGATCTGACGCGCGCATACTGCAACGAGCACTGCTGGAAGCAATCGACTTGAACAAGTGTCGGGCCGAATTTCAAGCATCTAGCTATGCATCCGAAGCGTCGAAGCAGATCGATAGC ] [+] EMBL BX615946 [ GCACCATAGACGGACGAGAGCAATGTGTATCCGGCGTGCAGACGGTGTCCGTGGGGCAACTATTTCGCAAAGATAATCTAGTACT GCCCGGCTAACCGTTCCCGCTGTGATCGGTCGGCGAGATCATATTGAGTCGATCTGTCTGCCGGTGACTCCTCAGCAGCGTGAACGTCTGTACAACCGGTACATCATGACGGGCTGGAAGGAGAGTGGATCTGACGCGCGCATACTGCACCGAGCACTGCTGGAAGCAATCGACTTGAACAAGTGTCGGGCCGAATTTCAAGCATCTAGCTATGCATCCGAAGCGTCGAAGCAGATCGATAGCAGAACCATTTGCGCTCGCAATATAAACG ] [+] EMBL BX617393 [ CAGACGGTGTCCGTGGGGCAACTATTTCGCAAAGATAATCTAGTACTAGCCCGGCTAACCGTTCCCGCTGTGATCGGTCGGCGAGATCATATTGAGTCGATCTGTCTGCCGGTGACTCCTCAGCAGCGTGAACGTCTGCACAACCGGTACATCATGACGGGCTGGAAGGAGAGTGGATCTGACGCGCGCATACTGCAACGAGCACTGCTGGAAGCAATCGACTTGAACAAGTGTCGGGCCGAATTTCAAGCATCTAGCTATGCATCCGAAGCGTCGAAGCAGATCGATAGCAGAACCATTTGCGCTCGCAATATAAACGATCCTTCCCGATCGCCGCAATGCAATGATTATCAGCCAGGATCGGCGATATAGGCCATAGAGAAGAAATCTAACCGATACTTGCTCTACGGGTTGCAGACGGGCATTAGCTACTGTTCAGTTCCAGAACAGTACATTGCTATCAGCAAGTATTTGCAATGGATCTTGGATAATATACGTGGGTAGGAAAAGCGTACCGGCTTCAGCTGGACGTAAATACTCAAAATGTAA] consensusID : consensus_8193#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 673 fasta sequence [CCACGCGTCCGGGAGAAGATCCTACCATGGTTCGTGAAACGGTGCCGTGGCAAGTGGATGGTATATTTGCGATACTGTTACTGCACAATGTTTGCTACAGTTTCGCACAGGACGAGCTGCAAATCAAAGACTTTAATGATAACGAGTGTGGAAAACGATTGGCCCAGCGCGAAGGGCTAGTGAAGGGTGGATATTCCACGCGCCCCGGTGACTGGCCGTGGCATGTAGCGCTCTATCAGCGGGGCATCAATAGCGATGGTTTCGAGTATGCGTGTGGTGGCAGCATTGTGCATCGGTATCTGGTGCTAACGGCGGCACACTGCGTCACGTTTGCGGCAAGCCGACGGAAAATTCCAACTGAAAATTTGCAGCTAAAGATGGGCCGGTTCAATCTGTCGAACGATGCGGAGGAGCATGCGGAAGAGTTTAGCGTGATCGAAACGATAGTGCACGTGGGCTTTCGGCCGACCACGTTCGAGAACGACATCGCCATCCTGCGGGTGGAAATTCCCATCATTTTCAATGATTACATTCAACCGGTGTGTCTTTGGAAGCGGGACGATGGGTTCGTCTTGCCGAGTGTCCACGACCAATCGGGCACGGTAGTTGGATGGGGACTTTCGGAAGAGAATCGGCTAGGCGCGGTCCTGAACGAGGCACTCATGCCGGTAGT] [+] EMBL BM634880 [CCACGCGTCCGGGAGAAGATCCTACCATGGTTCGTGAAACGGTGCCGTGGCAAGTGGATGGTATATTTGCGATACTGTTACTGCACAATGTTTGCTACAGTTTCGCACAGGACGAGCTGCAAATCAAAGACTTTAATGATAACGAGTGTGGAAAACGATTGGCCCAGCGCGAAGGGCTAGTGAAG ] [+] EMBL BM584405 [ ccgCATGGTTCGTGAAATGGTGGCGTGGCAAGTGGCTGGTATATTTGCGATACTGTTACTGCACAATGTTTGCTACAGTTTCGCACAGGACGAGCTACAAATCAAAGACTTTAATGATAACGAGTGTGGAAAACGTTTGGCCCAGCGCGAAGGGCTAGTGAAGGGTGGATATTCCACGCGCCCCGGTGACTGGCCGTGGCATGTAGCGCTCTATCAGCGGGGCATCAATAGCGATGGTTTCGAGTATGCGTGTGGTGGCAGCATTGTGCATCGGTATCTGGTGCTAACGGCGGCACACTGCGTCACGTTTGCGGCAAGCCGACGGAAAATTCCAACTGAAAATTTGCAGCTAAAGATGGGCCGGTTCAATCTGTCGAACGATGCGGAGGAGCATGCGGAAGAGTTTAGCGTGATCGAAACGATAGTGCACGTGGGCTTTCGGCCGACCACGTTCGAGAACGACATCGCCATCCTGCGGGTGGAAATTCCCATCATTTTCAATGATTACATTCAACCGGTGTGTCTTTGGAAGCGGGACGATGGG ] [+] EMBL BM619533 [ ccGGGCTAGTGAAGGGTGGATATTCCACGCGCCCCGGTGACTGGCCGTGGCATGTAGCGCTCTATCAGCGGGGCATCAATAGCGATGGTTTCGAGTATGCGTGTGGTGGCAGCATTGTGCATCGGTATCTGGTGCTAACGGCGGCACACTGCGTCACGTTTGCGGCAAGCCGACGGAAAATTCCAACTGAAAATTTGCAGCTAAAGATGGGCCGGTTCAATCTGTCGAACGATGCGGAGGAGCATGCGGAAGAGTTTAGCGTGATCGAAACGATAGTGCACGTGGGCTTTCGGCCGACCACGTTCGAGAACGACATCGCCATCCTGCGGGTGGAAATTCCCATCATTTTCAATGATTACATTCAACCGGTGTGTCTTTGGAAGCGGGACGATGGGTTCGTCTTGCCGAGTGTCCACGACCAATCGGGCACGGTAGTTGGATGGGGACTTTCGGAAGAGAATCGGCTAGGCGCGGTCCTGAACGAGGCACTCATGCCGGTAGT] [+] EMBL BX605913 [ ATGCGTGTGGTGGCAGCATTGTGCGTCGGTATCTGGTGCTAACGGCGGCACACTGCGTCACGTTTGCGGCAAGCCGACGGAAAATTCCAACTGAAAATTTGCAGCTAAAGATGGGCCGGTTCAATCTGTCGAACGATGCGGAGGAGCATGCGGAAGAGTTTAACGTGGTCGAAACGATAGTGCACGTGGGCTTTCGGCCGACCACGTTCGAGAACGACATCGCCATCCTGCGGGTGGAAATTCCCATCATTTTCAATGATTACATTCAACCGGTGT ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8193#0 CCGCCCACGCGTCCGTCGTCTTGCCGAGTGTCCACGACCAATCGGGCACGGTAGTTGGAT 60 consensus_8193#1 ------------------------------------------------------------ consensus_8193#0 GGGGACTTTCGGAAGAGAATCGGCTAGGCGCGGTCCTGAACGAGGCACTCATGCCGGTAG 120 consensus_8193#1 ------------------------------------------------------------ consensus_8193#0 TCGATTCGCTGACGTGTTTGGCGAGCGATCGGGCATTTTTCGGAAGATTGCTGTACTCCA 180 consensus_8193#1 ------------------------------------------------------------ consensus_8193#0 AAGCATTCTGCGCCGGATACAAAAATGGGACTGGAGTGTGCAATGGAGACAGTGGGGGTG 240 consensus_8193#1 --------------------------------------------CCACGCGTCCGGGAGA 16 * * *** consensus_8193#0 GAATGTTTTTCCAGTTTCAAAACCGGTGGTATCTGAAGGGCGTGGTTTCGTTTAGCAATA 300 consensus_8193#1 AGATCCTACCATGGTTCGTGAAACGGTGCCGTGGCAAGTGGATGGTAT--ATTTGCGATA 74 ** * *** ** ***** * *** * **** * ** ** *** consensus_8193#0 CTATTGATGCTACCGGAGTG-TGCAATCTAAAACAATACATCGGGTTTACGGACGCTTCG 359 consensus_8193#1 CTGTTACTGCACAATGTTTGCTACAGTTTCGCACAGGACGAGCTGCAAATCAAAGACTTT 134 ** ** *** * ** * ** * * *** ** * * * * * consensus_8193#0 CAATACATCGACTGGTTGTACGAAAATACACCAAACAGTGGAATCGACGATCCGATACTG 419 consensus_8193#1 AATGATAACGAGTG--TGGAAAACGATTGGCC---CAGCGCGAAGGGCTAGTGAAGGGTG 189 * * * *** ** ** * * ** ** *** * * * * * * ** consensus_8193#0 GGACATCCCAACATCCGCCTCATCAACCAGGGGAACTGTGG-ACGGAACGAGCATATATA 478 consensus_8193#1 G-ATATTCCA---CGCGCCCCGGTGACTGG-----CCGTGGCATGTAGCGCTC-----TA 235 * * ** *** **** * ** * * **** * * * ** * ** consensus_8193#0 CGAGTTCGGTGAGGATCGTAAACCCATCTTTAAGCAATATCCTTGGATGGTGACACTGCG 538 consensus_8193#1 TCAGCGGGGCATCAATAGCGA---TGGTTTCGAGTA-TGCGTGTGG-TGGCAGCATTGTG 290 ** ** ** * * ** ** * * *** *** ** ** * consensus_8193#0 CCACCCGTTCGTTGATTCCGAGTACGTCCCCCTGTAACGGAGTCTTGCTGAATCGAAACT 598 consensus_8193#1 C--ATCGGTATCTGGTGCTAACGGCGGCACACTGCGTCACGTTTGCGGCAAGCCGACGGA 348 * ** * ** * * * ** * * *** * * * * *** consensus_8193#0 ACGTTCTCACGACCAATTGTGTCGATTTACAGGGATGAAATCAGTGTGACACTAGGCGAT 658 consensus_8193#1 AAATTCCAACTGAAAATT-TGCAGCTAAAGATGGGCCGGTTCAATCTG---TCGAACGAT 404 * *** ** **** ** * * * * ** *** * ** **** consensus_8193#0 TACGATACGAGCAAGACAAAGGACTGCGGCACCATAGACGGACGAGAGCA-ATGTGTATC 717 consensus_8193#1 -GCGG-AGGAGCATG-CGGAAGAGTTTAGCGTGATCGAAACGATAGTGCACGTGGGCTTT 461 ** * ***** * * * ** * ** ** ** ** *** ** * * consensus_8193#0 CGGCGTGCAGACGGTGTCCGTGGGGCAACTATTTCGCAAAGATAATCTAGTACTAGCCCG 777 consensus_8193#1 CGGCCGACCACGTTCGAGAACGACATCGCCATCCTGCGGGTGGAAATTCCCATCATTTTC 521 **** * * * * ** ** ** * * * consensus_8193#0 GCTAACCGTTCCCGCTGTGATCGGTCGGCGAGATCATATTGAGTCGATCTGTCTGCCGGT 837 consensus_8193#1 AATGATTACATTCAAC-CGGTGTGTCTTTGGAAGCGGGACGA-TGGGTTCGTCTTGCCGA 579 * * * * * *** * * * ** * * * **** * * consensus_8193#0 GACTCCTCAGCAGCGTGAACGTCTGTACAACCGGTACATCATGACGGGCTGGAAGGAGAG 897 consensus_8193#1 GTGTCCACGACCAATCGGGC------ACGGTAGTTGGATGGGGAC--TTTCGGAAGAGAA 631 * *** * * * * ** * * ** *** * * * **** consensus_8193#0 TGGATCTGACGCGCGCATACTGCAACGAGCACTGCTGGAAGCAATCGACTTGAACAAGTG 957 consensus_8193#1 TCGGCTAGGCGCG---GTCCTGAACGAGGCACTCATGCCGGTAGT--------------- 673 * * * **** * *** * ***** ** * * * consensus_8193#0 TCGGGCCGAATTTCAAGCATCTAGCTATGCATCCGAAGCGTCGAAGCAGATCGATAGCAG 1017 consensus_8193#1 ------------------------------------------------------------ consensus_8193#0 AACCATTTGCGCTCGCAATATAAACGATCCTTCCCGATCGCCGCAATGCAATGATTATCA 1077 consensus_8193#1 ------------------------------------------------------------ consensus_8193#0 GCCAGGATCGGCGATATAGGCCATAGAGAAGAAATCTAACCGATACTTGCTCTACGGGTT 1137 consensus_8193#1 ------------------------------------------------------------ consensus_8193#0 GCAGACGGGCATTAGCTACTGTTCAGTTCCAGAACAGTACATTGCTATCAGCAAGTATTT 1197 consensus_8193#1 ------------------------------------------------------------ consensus_8193#0 GCAATGGATCTTGGATAATATACGTGGGTAGGAAAAGCGTACCGGCTTCAGCTGGACGTA 1257 consensus_8193#1 ------------------------------------------------------------ consensus_8193#0 AATACTCAAAATGTAA 1273 consensus_8193#1 ---------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||