These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8208#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 1333 fasta sequence [AAGTAAAGAT-AAAAAAATGTGCGACGGTACAGATGAAAAATGGGGATTTAAAAC-AAAAAAAAAACAACGGGGAAACAAGTTTAAGTGATACAAAATTGGGTACAAATTATTATAACACGATTGGAAACAACAAGTAACCAAAAAAGGAGGAAAAACTCACCTTAAAGAAAAACAAAACACAAAAATTAAGAAACTAAAACCCCTTTTTGTCATTGCAACAGAAGCGAAAGCAAATGTGTTTGCGCCGGGCGTATATATTCGTAGCGCTTGTATTTGATGTCTTAAAAAGGTGAGCGTCCTAATAATTGTGCATGAACAAAATCGAAATTAGGATGATTATACTGTTGCGCTTCTTATTGCTTTTGCTTTATTGCCGTTGTTCGGTTAAAACACACACAGACACATGTCGTTGTGTTGCGTAAAAATTAAGTAAAGTAAGCGATTTTCCCGTGTGCGTGATGGCTTCACGTGTTTAGCGCGAGTTAACCTGCCCAAGGCATGGGGTGTGCGTAGTGGGGGGTTTGCAGGTGGAAACAAAGGGAAGAGAGAAGTGATAATAAGGACTCGCTGCATCCTTTCCCGATCCTTTCCTCACTGCTCCCCCTCCTCCTGTTTGTATCTGTGCTCTTGCGTGTTATTAACTTGATGCAAATTCGAAAGCAAAACGATTCTATATATATATACACACACATATATAAAAGACACAAAACAAATTCAAAACA-CCGTATTTACATTTCTACAATGCAAAAGTTTTATTTAAAAAAATATTAGGTGATAAGGCAAATTCTTATTTGTTTTAAGTAACTATGCGCCTGCTAGGGGCGTGGTACAGCCGGCAGTACAAGATCATGAACAATGAGTAATAGAGCAGTTAGTTCGGTGTACGTACGATCCAATAAAACAAAACAACAAACACATGGAACATGGAATGAAATCTCCCAACAAAAACAAATAGACAAGTGGCTACAGCTGCCGATATGATGATGCTACTACTACTACTGCTAGTGCTACTGTTGCCACTACTACTTCTACTACTGCCCCTTTAATACACGTGTGGAGGAAGGCATTATTCGCTCTGGTATAAACAGCTTGGCGTTAAAGAGGCAGTGAGGAACAGGCATTTGTCCCCCACGTGTTCAAAGGGCGCGCCCTCACGTGCTCATAGCAAAACAATAGCAAATACAAACAAAAATGCTACACTCTAACCCCTCACAAAACAAACACACATACAATTCTATATATGTATGGATGCATACTGCAAAACACAAACGTTATGCTGGCTGAAAGTGATCGATTAGTGAATAAAGGTATTAACAAAGTGTCTCATAAAAAA] [+] EMBL AGA285099 [AAGTAAAGAT AAAAAAATGTGCGACGGTACAGATGAAAAATGGGGATTTAAAAC AAAAAAAAAACAACGGGGAAACAAGTTTAAGTGATACAAAATTGGGTACAAATTATTATAACACGATTGGAAACAACAAGTAACCAAAAAAGGAGGAAAAACTCACCTTAAAGAAAAACAAAACACAAAAATTAAGAAACTAAAACCCCTTTTTGTCATTGCAACAGAAGCGAAAGCAAATGTGTTTGCGCCGGGCGTATATATTCGTAGCGCTTGTATTTGATGTCTTAAAAAGGTGAGCGTCCTAATAATTGTGCATGAACAAAATCGAAATTAGGATGATTAT ] [+] EMBL BM608609 [ ccgAAGATAAAAAAAATGTGCGACGGTACAGATGAAAAATGGGGATTTAAAAC AAAAAAACAACGGGGAAACAAGTTTAAGTGATACAAAATTGGGTACAAATTATTATAACACGATTGGAAACAACAAGTAACCAAAAAAGGAGGAAAAACTCTACTTAAAGAAAAACAAAACACAAAAATTAAGAAACTAAAACCCCTTTTTGTCATTGCAACAGAAGCGAAAGCAAAAGTGTTTGCGCCGGGCGTATATATTCGTAGCGCTTGTATTTGATGTCTTAAAAGGGTGAGCGTCCTAATTATTGTGCATGGAAAATCCCGAAATTGGGATGTTTAAACTGTTGCGCTTCTTATTGCTTTTGCTTTATTGCCGTTGTTCGGTTAAAACACACACCGACACATGTCGTTGTGTTGCGTAAAAATTAAGTAAAGTAAGCGATTTTCCCGTGTGCGCGATGGCTTCACGTGTTTAGCGCGAGTTAACCTGCCCAAGGCATGGGGTGTGCGTAGTGGGGGGTTTGCAGGTGGAAACAAAGGGAAGAGAGAAGTGATAATAAGGACACGCTGCATCCATTCCCGATCCTTTCCTCACTGCTCCCCCTCCTCCTGTTTGTATCTGTGCTCTTGCGTGTTATTAACTTGATGCAAATTCG ] [+] EMBL BX617529 [ AAACAAAAAAAAAAACAACGGGGAAACAAGTTTAAGTGATACAAAATTGGGTACAAATTATTATAACACGATTGGAAACAACAAGTAACCAAAAAAGGAGGAAAAACTCACCTTAAAGAAAAACAAAACACAAAAATTAAGAAACTAAAACCCCTTTTTGTCATTGCAACAGAAGCGAAAGCAAATGTGTTTGCGCCGGGCGTATATATTCGTAGCGCTTGTATTTGATGTCTTAAAAAGGTGAGCGTCCTAATAATTGTGCATGAACAAAATCGAAATTAGGATGATTATACTGTTGCGCTTCTTATTGCTTTTGCTTTATTGCCGTTGTTCGGTTAAAACACACACAGACACATGTCGTTGTGTTGCGTAAAAATTAAGTAAAGTAAGCGATTTTCCCGTGTGCGTGATGGCTTCACGTGTTTAGCGCGAGTTAACCTGCCCAAGGCATGGGGTGTGCGTAGTGGGGGGTTTGCAGGTGGAAACAAAGGGAAGAGAGAAGTGATAATAAGGACTCGCTGCATCCTTTCCCGATCCTTTCCTCACTGCTCCCCCTCCTCCTGTTTGTATCTGTGCTCTTGCGTGTTATTAACTTGATGCAAATTCGAAAGCAAAACGATTCTATATATATATACACACACTTATATAAAAGACACAAAAACAATTCCAAACACCCGTATTTACATTTCTACAATGCAAAAGTT ] [+] EMBL BX621932 [ CCTTAAAGAAAAACAAAACACAAAAATTAAGAAACTAAAACCCCTTTTTGTCATTGCAACAGAAGCGAAAGCAAATGTGTTTGCGCCGGGCGTATATATTCGTAGCGCTTGTATTTGATGTCTTAAAAAGGTGAGCGTCCTAATAATTGTGCATGAACAAAATCGAAATTAGGATGATTATACTGTTGCGCTTCTTATTGCTTTTGCTTTATTGCCGTTGTTCGGTTAAAACACACACAGACACATGTCGTTGTGTTGCGTAAAAATTAAGTAAAGTAAGCGATTTTCCCGTGTGCGTGATGGCTTCACGTGTTTAGCGCGAGTTAACCTGCCCAAGGCATGGGGTGTGCGTAGTGGGGGGTTTGCAGGTGGAAACAAAGGGAAGAGAGAAGTGATAATAAGGACTCGCTGCATCCTTTCCCGATCCTTTCCTCACTGCTCCCCCTCCTCCTGTTTGTATCTGTGCTCTTGCGTGTTATTAACTTGATGCAAATTCGAAAGCAAAACGATTCTATATATATATACACACACATATATAAAAGACACAAAACAAATTCAAAACA CCGTATTTACATTTCTACAATGCAAAAGTTTTATTTAAAAAAATATTAGGTGATAAGGCAAATTCTTATTTGTTTTAAGTAACTATGCGCCTGCTAGGGGCGTGGTACAGCCGGCAGTACAAGATCATGAACNATGAGTAATAGAGCAGTTAGTTCGGTGTACGTACGA ] [+] EMBL BX609425 [ ACAGAAGCGAAAGCAAATGTGTTTGCGCCGGGCGTATATATTCGTAGCGCTTGTATTTGATGTCTTAAAAAGGTGAGCGTCCTAATAATTGTGCATGAACAAAATCGAAATTAGGATGATTATACTGTTGCGCTTCTTATTGCTTTTGCTTTATTGCCGTTGTTCGGTTAAAACACACACAGACACATGTCGTTGTGTTGCGTAAAAATTAAGTAAAGTAAGCGATTTTCCCGTGTGCGTGATGGCTTCACGTGTTTAGCGCGAGTTAACCTGCCCAAGGCATGGGGTGTGCGTAGTGGGGGGTTTGCAGGTGGAAACAAAGGGAAGAGAGAAGTGATAATAAGGACTCGCTGCATCCTTTCCCGATCCTTTCCTCACTGCTCCCCCTCCTCCTGTTTGTATCTGTGCTCTTGCGTGTTATTAACTTGATGCAAATTCGAAAGCAAAACGATTCTATATATATATACACACACATATATAAAAGACACAAAACAAATTCAAAACA CCGTATTTACATTTCTACAATGCAAAAGTTTTATTTAAAAAAATATTAGGTGATAAGGCAAATTCTTATTTGTTTTAAGTAACTATGCGCCTGCTAGGGGCGTGGTACAGCCGGCAGTACAAGATCATGAACAATGAGTAATAG ] [+] EMBL BX614179 [ ACAGAAGCGAAAGCAAATGTGTTTGCGCCGGGCGTATATATTCGTAGCGCTTGTATTTGATGTCTTAAAAAGGTGAGCGTCCTAATAATTGTGCATGAACAAAATCGAAATTAGGATGATTATACTGTTGCGCTTCTTATTGCTTTTGCTTTATTGCCGTTGTTCGGTTAAAACACACACAGACACATGTCGTTGTGTTGCGTAAAAATTAAGTAAAGTAAGCGATTTTCCCGTGTGCGTGATGGCTTCACGTGTTTAGCGCGAGTTAACCTGCCCAAAGCATGGGG ] [+] EMBL BM585100 [ ccgCTTGATGCAAATTCGAAAGCAAAACGATTCTATATATATATACACACACATATATAAAAGACACAAAACTAATTCAAAACA CCGTATTTACATTTCTACAATGCAAAAGTTTTATTTAAAAAAATATTACGTGATAAGGCAAATTCTTATTTGTTTTAAGTAACTATGCGCCTGCTAGGGGCGTGGTACAGCCGGCAGTACAAGATCATGAACAATGAGTAATAGAGCAGTTAGTTCGGTGTACGTACGATCCAATAAAACAAAACAACAAACACATGGAACATGGAATGAAATCTCCCAACAAAAACAAATAGACAAGTGGCTACAGCTGCCGATATGATGATGCTACTACTACTACTGCTAGTGCTACTGTTGCCACTACTACTTCTACTACTGCCCCTTTAATACACGTGTGGAGGAAGGCATTATTCGCTCTGGTATAAACAGCTTGGCGTTAAAGAGGCAGTGAGGAACAGGCATTTGTCCCCCA ] [-] EMBL AGA283808 [ ATATGATGATGCTACTACTACTACTGCTAGTGCTACTGTTGCCACTACTACTTCTACTACTGCCCCTTTAATACACGTGTGGAGGAAGGCATTATGCGCTCTGGTATAAACAGCTTGGCGTTAAAGAGGCAGTAAGGAACAGGCATTTGTCCCCCACGTGTTCAAAGGGCGCGCCCTCACGTGCTCATAGCAAAACAATAGCAAATACAAACAAAAATGCTACACTCTAACCCCTCACAAAACAAACACACATACAATTCTATATATGTATGGATGCATACTGCAAAACACAAACGTTATGCTGGCTGAAAGTGATCGATTAGTGAATAAAGGTATTAACAAAGTGTCTCATAAAAAA] consensusID : consensus_8208#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 884 fasta sequence [TCAGCAGACTCCCCCGACGGTTAACAAATCGAAATTAGGATGACTTAAACTGTTGCGCTTCTTATAGCTTTTGCTTTATTGCCGTTGTTCGGTTAAAACACACACAGGACACATGTCGTATGTGTTGCGTAAAAATTANGTANCAGTAAGCGATNTTTCCCGTGTGCGCGATAGGCTATCAGCGCGAGTTAACCTGNACCAAGGCATGGGGTGTGTAGTACTAGGGGGGTAANGCAGGTGGAAACAANAGGGAAGAGAGCAAGTGATAATAAGGACACCGCTGACATCACTATATCCCGCATCCTATATCCTCACTGGATACCACCCTACCTCCTAGTATCGTATACTGTGCCTCTNTGGCGTAGTNNATCNAAACTATGATGCAAATTCGAAAGCAAACACGATNCTCATATATATACACACACATATACTCAAACGAAACAAACACCANNNTTCCCCAAAAACCGTAATANANCACTNTTCTACNCACTCGGCACCACGTCTCCCNTCCNCACACACNACTCNTTCCCCGCTGATCAACGGGCACACTTCCTCTNNTCACGTACACAGTACACTANACTGCCGCCCTGNAANCAGGGCGCNCCGTCGCGCTCACACCGCCCCGCGCANACGCNACCAANAAGNCANTTCCATTAGAAACCACAACATNTGGAACGGTCANACTTTAAGGCAANAACCAAGGACAAAGCNACACCAGGGGATGTTNACCCAGGTAACNCGCAGTTCCCACNANTCAAAACACAACAANACAACAACCAACCTCACACAACCCACCACTGGCACAANCCACATTNGGGACNCTCNGGCACNCATGCCCACCNCAACACANAAACNAACAACACGCACCTCACGACACCCCCCCG] [+] EMBL AL929933 [TCAGCAGACTCCCCCGACGGTTAACAAATCGAAATTAGGATGACTTAAACTGTTGCGCTTCTTATAGCTTTTGCTTTATTGCCGTTGTTCGGTTAAAACACACACAGGACACATGTCGTATGTGTTGCGTAAAAATTANGTANCAGTAAGCGATNTTTCCCGTGTGCGCGATAGGCTATCAGCGCGAGTTAACCTGNACCAAGGCATGGGGTGTGTAGTACTAGGGGGGTAANGCAGGTGGAAACAANAGGGAAGAGAGCAAGTGATAATAAGGACACCGCTGACATCACTATATCCCGCATCCTATATCCTCACTGGATACCACCCTACCTCCTAGTATCGTATACTGTGCCTCTNTGGCGTAGTNNATCNAAACTATGATGCAAATTCGAAAGCAAACACGATNCTCATATATATACACACACATATACTCAAACGAAACAAACACCANNNTTCCCCAAAAACCGTAATANANCACTNTTCTACNCACTCGGCACCACGTCTCCCNTCCNCACACACNACTCNTTCCCCGCTGATCAACGGGCACACTTCCTCTNNTCACGTACACAGTACACTANACTGCCGCCCTGNAANCAGGGCGCNCCGTCGCGCTCACACCGCCCCGCGCANACGCNACCAANAAGNCANTTCCATTAGAAACCACAACATNTGGAACGGTCANACTTTAAGGCAANAACCAAGGACAAAGCNACACCAGGGGATGTTNACCCAGGTAACNCGCAGTTCCCACNANTCAAAACACAACAANACAACAACCAACCTCACACAACCCACCACTGGCACAANCCACATTNGGGACNCTCNGGCACNCATGCCCACCNCAACACANAAACNAACAACACGCACCTCACGACACCCCCCCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8208#0 AAGTAAAGATAAAAAAATGTGCGACGGTACAGATGAAAAATGGGGATTTAAAACAAAAAA 60 consensus_8208#1 ------------------------------------------------------------ consensus_8208#0 AAAACAACGGGGAAACAAGTTTAAGTGATACAAAATTGGGTACAAATTATTATAACACGA 120 consensus_8208#1 ------------------------------------------------------------ consensus_8208#0 TTGGAAACAACAAGTAACCAAAAAAGGAGGAAAAACTCACCTTAAAGAAAAACAAAACAC 180 consensus_8208#1 ------------------------------------------------------------ consensus_8208#0 AAAAATTAAGAAACTAAAACCCCTTTTTGTCATTGCAACAGAAGCGAAAGCAAATGTGTT 240 consensus_8208#1 ------------------------------------------------------------ consensus_8208#0 TGCGCCGGGCGTATATATTCGTAGCGCTTGTATTTGATGTCTTAAAAAGGTGAGCGTCCT 300 consensus_8208#1 ---------------------------------------------TCAGCAGACTCCCCC 15 ** ** ** consensus_8208#0 AATAATTGTGCATGAACAAAATCGAAATTAGGATGA-TTATACTGTTGCGCTTCTTATTG 359 consensus_8208#1 GACGGTT-------AACAAA-TCGAAATTAGGATGACTTAAACTGTTGCGCTTCTTATAG 67 * ** ****** *************** *** ***************** * consensus_8208#0 CTTTTGCTTTATTGCCGTTGTTCGGTTAAAACACACACAG-ACACATGTCGT-TGTGTTG 417 consensus_8208#1 CTTTTGCTTTATTGCCGTTGTTCGGTTAAAACACACACAGGACACATGTCGTATGTGTTG 127 **************************************** *********** ******* consensus_8208#0 CGTAAAAATTAAGTAA-AGTAAGCGATTTT-CCCGTGTGCGTGATGGCTTCACGTGTTTA 475 consensus_8208#1 CGTAAAAATTANGTANCAGTAAGCGATNTTTCCCGTGTGCGCGATAGGCTA------TCA 181 *********** *** ********** ** ********** *** * * * * consensus_8208#0 GCGCGAGTTAACCTGC-CCAAGGCATGGGGTGTGC-GTAGTGGGGGGTT--TGCAGGTGG 531 consensus_8208#1 GCGCGAGTTAACCTGNACCAAGGCATGGGGTGTGTAGTACTAGGGGGGTAANGCAGGTGG 241 *************** ***************** *** * ***** * ******** consensus_8208#0 AAACAAA-GGGAAGAGAG-AAGTGATAATAAGGAC-TCGCTG----CATCCTTTCCCG-A 583 consensus_8208#1 AAACAANAGGGAAGAGAGCAAGTGATAATAAGGACACCGCTGACATCACTATATCCCGCA 301 ****** ********** **************** ***** ** * ***** * consensus_8208#0 TCCTTT--CCTCACTG----CTCCCCCTCCTCCTGTT--TGTAT-CTGTGCTCTTGCG-T 633 consensus_8208#1 TCCTATATCCTCACTGGATACCACCCTACCTCCTAGTATCGTATACTGTGCCTCTNTGGC 361 **** * ******** * *** ****** * **** ****** * * consensus_8208#0 GTTATTAACTT-------GATGCAAATTCGAAAGCAAA-ACGATTCTATATATATATACA 685 consensus_8208#1 GTAGTNNATCNAAACTATGATGCAAATTCGAAAGCAAACACGATNCT-CATATATATACA 420 ** * * ******************** ***** ** *********** consensus_8208#0 CACACATATATAAAAGACACAAAACAAATTCAAAACACCGTATTTACATTTCTACAATGC 745 consensus_8208#1 CACACATATACTCAA---ACGAAACAAACAC----CANNNTTCCCCAAAAACCGTAATAN 473 ********** ** ** ******* * ** * * * *** consensus_8208#0 AAAAGTTTTATTTAAAAAAATATTAGGTGATAAGGCAAATTCTTATTTGTTTTAAGTAAC 805 consensus_8208#1 ANCACTNTTCT------ACNCACTCGGCACCACG-----TCTCCCNTCCNCACACACNAC 522 * * * ** * * * * ** * * * * * ** consensus_8208#0 TATGCGCCTGCTAGGGGCGTGGTACAGCCGGCAGTACAAGATCATGAACAATGAGTAATA 865 consensus_8208#1 TCNTTCCCCGCTGATCAACGGGCACACTT-----CCTCTNNTCACGTACACAGTACACTA 577 * ** *** ** *** *** * *** * * ** consensus_8208#0 GAGCAGTTAGTTCGGTGTACGTACGATCCAATAAAACAAAACAACAAACACATGGAACAT 925 consensus_8208#1 NA----CTGCCGCCCTGNA----------ANCAGGGCGCNCCGTCGCGCTCACACCGCCC 623 * * * ** * * * * * * * ** * consensus_8208#0 GGAATGAAATCTCCCAACAAAAACAAATAGACAAGTGGCTACAGCTGCCGATATGATGAT 985 consensus_8208#1 CGCGCANACGCNACCAANAAGN-CANTTCCATTAGAAACCACAACATNTGGAACGGTCAN 682 * * * **** ** ** * * ** * *** * * * * * * consensus_8208#0 GCTACTACTACTACTGCTAGTGCTACTGTTGCCACTACTACTTCTACTACTGCCCCTTTA 1045 consensus_8208#1 ACT-TTAAGGCAANAACCAAGGACAAAGCNAC-ACCAGGGGATGT----TNACCCAGGTA 736 ** ** * * * * * * * * ** * * * *** ** consensus_8208#0 ATACACGTGTGGAGGAAGGCATTATTCGCTCTGGTATAAACAGCTTGGCGTTAAAGAGGC 1105 consensus_8208#1 ACNC--------------GCAGTTCCCACNANTCAAAACACAACAANACAACAACCAACC 782 * * *** * * * * * *** * * ** * * consensus_8208#0 AGTGAGGAACAGGCATTTGTCCCCCACGTGTTCAAAGGGCGCGCCCTCACGTGCTCATAG 1165 consensus_8208#1 TCACACAACCCACCACTGGCACAANCCACATTNGGGACNCTCNGGCACNCATGCCCACCN 842 * * * ** * * * * ** * * * * * *** ** consensus_8208#0 CAAAACAATAGCAAATACAAACAAAAATGCTACACTCTAACCCCTCACAAAACAAACACA 1225 consensus_8208#1 CAACACANAAACNAACA-----ACACGCACCTCACGACACCCCCCCG------------- 884 *** *** * * ** * * * * *** * **** * consensus_8208#0 CATACAATTCTATATATGTATGGATGCATACTGCAAAACACAAACGTTATGCTGGCTGAA 1285 consensus_8208#1 ------------------------------------------------------------ consensus_8208#0 AGTGATCGATTAGTGAATAAAGGTATTAACAAAGTGTCTCATAAAAAA 1333 consensus_8208#1 ------------------------------------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||