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Anopheles gambiae
cluster # 8220 cluster # 8220       Sequences # 9       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8220#0 length = 856 sequences # 8  
consensus_8220#1 length = 660 sequences # 1  

consensusID : consensus_8220#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 8
consensus length = 856
fasta sequence
                              [CCGGAAAATCGGAGGAGAAGCATTGCTCGCTTTTCTCGTCACGAAAGTTGGTGCGTGCGAACGGCTGAACCCCACAATCGATAGGGTAGTGTGAAGCGTGACACGGTGTAGTACGAAGAGAGACGCACAGTTAACGTAAAGTTTTGCGCGAAGCAACAGCATCCGGAACCGGATTTTCGACACTTTGCTCGCGGACACGTTCGGAGCACCAACGCAGTGCGCCTTCCCATCCCGCTCCACCGCACACACAGATACGCAACGGTGAAGGAGAAGACAGAACACCCCGAGGAGGAATAAAACATGGCTGCCAGTGCGAGCGGTGATAAAGCTGCGGATGATTCACTCTATCCGATTGCTGTTTTGATCGATGAGCTGAAAAATGAAGATATTCAGCTCCGCCTAAACTCGATCAAGAAGCTGTCGACGATTGCCCTAGCACTCGGCGAAGAGCGGACGCGCAACGAGCTGATCCCGTTCCTGACCGAGTCCATCTACGACGAGGATGAGGTGCTGCTGGCACTGGCCGAGCAGCTCGGCAACTTTATCCCGCTGGTCGGCGGGCCCGAGTACGCGATGTATCTGATACCGCCGCTCGAATCGCTCGCCA-CGGTCGAGGAGACGGTGGTGCGCGAGAAGGCGGTCGAGTCGCTCCGTACCGTGGCCGGCCAGCACAGCGCACAGGATCTGGAGGTGCACCTGGTGCCGACGCTGCAGCGCCTGGTGTCGGGCGACTGGTTCACATCGCGCACGTCCGCCTGCGGCCTGTTCTCCGTGTGCTATCCGCGCGTGTCTGCCGCGGTCAAGTCGGAGCTGCGCATCAACTTCCGCACGCTCTGCCAGGACGAGACGCCGATGG]

[+] EMBL BM585290             [CCGGAAAATCGGAGGAGAAGCATTGCTCGCTTTTCTCGTCACGAAAGTTGGTGCGTGCGAACGGCTGAACCCCACAATCGATAGGGTAGTGTGAAGCGTGACACGGTGTAGCACGAAGAGAGACGCACAGTTAACGTAAAGTTTTGCGCGAAGCAACAGCATCCGGAACCGGATTTTCGACACTTTGCTCGCGGACACGTTCGGAGCACCAACGCAGTGCGCCTTCCCATCCCGCTCCACCGCACACACAGATACGCAACGGTGAAGGAGAAGACAGAACACCCCGAGGAGGAATAAAACATGGCTGCCAGTGCGAGCGGTGATAAAGCTGCGGATGATTCACTCTATCCGATTGCTGTTTTGATCGATGAGCTGAAAAATGAAGATATTCAGCTCCGCCTAAACTCGATCAAGAAGCTGTCGACGATTGCCCTAGCACTCGGCGAAGAGCGGACGCGCAACGAGCTGATCCCGTTCCTGACCGAGTCCATCTACGACGAGGATGAGGTGCTGCTGGCACTGGCCGAGCAGCTCGGCAACTTTATCCCGCTGGTCGGCGGGCCCGAGTACGCGATGTATCTGATACCGCCGCTCGAATCGCTCGCCA CGGTCGAGGAGACGGTGGTGCGCGAGAAAGCGGTCGAGTCGCTCCGTACCGTGGCCGGCCAGCACAGCGCACAGGATCTGGAGGTGCA                                                                                                                                                                 ]
[+] EMBL BM647697             [              ccGAAGCATTGCTCGCTTTTCTCGTCACGAAAGTTGGTGCGTGCGAACGGCTGAACCCCACAATCGATAGGGTAGTGTGAAGCGTGACACGGTGTAGTACGAAGAGAGACGCACAGTTAACGTAAAGTTTTGCGCGAAGCAACAGCATCCGGAACCGGATTTTCAACACTTTGCTCGCGGACACGTTCGGAGCACCAACGCAGTGCGCCTTCCCATCCCGCTCCACCGCACACACAGATACGCAACGGTGAAGGAGAAGACAGAACACCCCGAGGAGGAATAAAACATGGCTGCCAGTGCGAGCGGTGATAAAGCTGCGGATGATTCACTCTATCCGATTGCTGTTTTGATCGATGAGCTGAAAAATGAAGATATTCAGCTCCGCCTAAACTCGATCAAGAAGCTGTCGACGATTGCCCTAGCACTCGGCGAAGAGCGGACGCGCAACGAGCTGATCCCGTTCCTGACCGAGTCCATCTACGACGAGGATGAGGTGCTGCTGGCACTGGCCGAGCAGCTCGGCAACTTTATCCCGCTGGTCGGCGGGCCCGAGTACGCGATGTATCTGATACCGCCGCTCGAATCGCTCGCCA CGGTCGAGGAGACGGTGGTGCGCGAGAAGGCGGTCGAGTCGCTCCGTACCGTGGCCGGCCAGCACAGCGCCCAGGATCTGGAGGTGCA                                                                                                                                                                 ]
[+] EMBL BM653416             [                                                                                                    ccgCGGTGTAGTACGAAGAGAGACGCACGGTTAACGTAAAGTTTTGCGCGAAGCAACAGCATCCGGAACCGGATTTTCAACACTTTGCTCGCGGACACGTTCGGAGCACCAACGCAGTGCGCCTTCCCATCCCGCTCCACCGCACACACAGATACGCAACGGTGAAGGAGAAGACAGAACACCCCGAGGAGGAATAAAACATGGCTGCCAGTGCGAGCGGTGATAAAGCTGCGGATGATTCACTCTATCCGATTGCTGTTTTGATCGATGAGCTGAAAAATGAAGATATTCAGCTCCGCCTAAACTCGATCAAGAAGCTGTCGACGATTGCCCTAGCACTCGGCGAAGAGCGGACGCGCAACGAGCTGATCCCGTTCCTGACCGAGTCCATCTACGACGAGGATGAGGTGCTGCTGGCACTGGCCGAGCAGCTCGGCAACTTTATCCCGCTGGTCGGCGGGCCCGAGTACGCGATGTATCTGATACCGCCGCTCG                                                                                                                                                                                                                                                                      ]
[+] EMBL AGA284702            [                                                                                                                      AGAGACGCACAGTTAACGTAAAGTTTTGCGCGAAGCAACAGCATCCGGAACCGGATTTTCGACACTTTGCTCGCGGACACGTTCGGAGCACCAACGCAGTGCGCCTTCCCATCCCGCTCCACCGCACACACAGATACGCAACGGTGAAGGAGAAGACAGAACACCCCGAGGAGGAATAAAACATGGCTGCCAGTGCGAGCGGTGATAAAGCTGCGGATGATTCACTCTATCCGATTGCTGTTTTGATCGATGAGCTGAAAAATGAAGATATTCAGCTCCGCCTAAACTTGATCAAGAAGCTGTCGACGATTGCCCTAGCACTCGGCGAAGAGCGGACGCGCAACGAGCTGATTCCGTTCCTGACCGA                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL AGA285811            [                                                                                                                                                                       ACCGGATTTTCGACACTTTGCTCGCGGACACGTTCGGAGCACCAACGCAGTGCGCCTTCCCATCCCGCTCCACCGCACACACAGATACGCAACGGTGAAGGAGAAGACAGAACACCCCGAGGAGGAATAAAACATGGCTGCCAGTGCGAGCGGTGATAAAGCTGCGGATGATTCACTCTATCCGATTGCTGTTTTGATCGATGAGCTGAAAAATGAAGATATTCAGCTCCGCCTAAACTCGATCAAGAAGCTGTCGACGATTGCCCTAGCACTCGGCGAAGAGCGGACGCGCAACGAGCTGATCCCGTTCCTGACCGAGTCCATCTACGACGAGGATGAAGTGCTGCTGGCACTGGCCGAGCAGCTCGGCAACTTTATCCCGCTGGGCGGCGGGCCCGAGTACGCGATGTATCTGATACCGCCGCTCGAATCG                                                                                                                                                                                                                                                                 ]
[-] EMBL AGA284529            [                                                                                                                                                                                                                                                                                                                                                                                                                                        CGATTGCCNTAGCACTCGGCGAAGAGCGGACGCGCAACGAGCTGATCCCGTTCCTGACCGAGTCCATCTACGACGAGGATGAGGTGCTGCTGGCACTGGCCGAGCAGCTCGGCAACTTTATCCCGCTGGTCGGCGGGCCCGAGTACGCGATGTATCTGATACCGCCGCTCGAATCGCTCGCCA CGGTCGAGGAGACGGTGGTGCGCGAGAAGGCGGTCGAGTCGCTCCGTACCGTGGCCGGCCAGCACAGCGCACAGGATCTGGAGGTGCACCTGGTGCCGACGCTGCAGCGCCTGGTGTCGGGCGACTGGTTCACATCGCGCACGTCCGCCTGCGGCCTGTTCTCCGTGTGCTATCCGCGCGTGTCTGCCGCGGTCAAGTCGGAGCTGCGCATCAACTTCCGCACGCTCTGCCAGGACGAGACGCCGATG ]
[-] EMBL AGA284507            [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         AATTTTATCCCGCTGGTCGGCGGGCCCGAGTACGCGATGTATCTGATACCGCCGCTCGAATCGCTCGCCACCGGTCGAGGAGACGGTGGTGCGCGAGAAGGCGGTCGAGTCGCTCCGTACCGTGGCCGGCCGGCACGGCGCACAGGATCTGGAGGTGCACCTGGTGCCGACGCTGCAGCGCCTGGTGTCGGGCGACTGGTTCACATCGCGCACGTCCGCCTGCGGCCTGTTCTCCGTGTGCTATCCGCGCGTGTCTGCCGCGGTCAAGTCGGAGCTGCGCATCAACTTCCGCACGCTCTGCCAGGACGAGACGCCGATG ]
[-] EMBL AGA283408            [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ATACCCCCGCTCGAATCGCTCGCCA CGGTCGAGGAGACGGTGGTGCGCGAGAAGGCGGTCGAGTCGCTCCGTACCGTGGCCGGCCAGCACAGCGCACAGGATCTGGAGGTGCACCTGGTGCCGACGCTGCAGCGCCTGGTGTCGGGCGACTGGTTCACATCGCGCACGTCCGCCTGCGGCCTGTTCTCCGTGTGCTATCCGCGCGTGTCTGCCGCGGTCAAGTCGGAGCTGCGCATCAACTTCCGCACGCTCTGCCAGGACGAGACGCCGATGG]


>consensus_8220#0 CCGGAAAATCGGAGGAGAAGCATTGCTCGCTTTTCTCGTCACGAAAGTTGGTGCGTGCGA ACGGCTGAACCCCACAATCGATAGGGTAGTGTGAAGCGTGACACGGTGTAGTACGAAGAG AGACGCACAGTTAACGTAAAGTTTTGCGCGAAGCAACAGCATCCGGAACCGGATTTTCGA CACTTTGCTCGCGGACACGTTCGGAGCACCAACGCAGTGCGCCTTCCCATCCCGCTCCAC CGCACACACAGATACGCAACGGTGAAGGAGAAGACAGAACACCCCGAGGAGGAATAAAAC ATGGCTGCCAGTGCGAGCGGTGATAAAGCTGCGGATGATTCACTCTATCCGATTGCTGTT TTGATCGATGAGCTGAAAAATGAAGATATTCAGCTCCGCCTAAACTCGATCAAGAAGCTG TCGACGATTGCCCTAGCACTCGGCGAAGAGCGGACGCGCAACGAGCTGATCCCGTTCCTG ACCGAGTCCATCTACGACGAGGATGAGGTGCTGCTGGCACTGGCCGAGCAGCTCGGCAAC TTTATCCCGCTGGTCGGCGGGCCCGAGTACGCGATGTATCTGATACCGCCGCTCGAATCG CTCGCCACGGTCGAGGAGACGGTGGTGCGCGAGAAGGCGGTCGAGTCGCTCCGTACCGTG GCCGGCCAGCACAGCGCACAGGATCTGGAGGTGCACCTGGTGCCGACGCTGCAGCGCCTG GTGTCGGGCGACTGGTTCACATCGCGCACGTCCGCCTGCGGCCTGTTCTCCGTGTGCTAT CCGCGCGTGTCTGCCGCGGTCAAGTCGGAGCTGCGCATCAACTTCCGCACGCTCTGCCAG GACGAGACGCCGATGG



consensusID : consensus_8220#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 660
fasta sequence
                              [CCGCCCACGCGTCCGCAGCATCCGGAACCGGATTTTCAACACTTTGCTCGCGGACACGTTCGGAGCACCAACGCAGTGCGCCTTCCCATCCCGCTCCACCGCACACACAGATACGCAACGGTGAAGGAGAAGACAGAACACCCCGAGGAGGAATAAAACATGGCTGCCAGTGCGAGCGGTGATAAAGCTGCGGATGATTCACTCTATCCGATTGCTGTTTTGATCGATGAGCTGAAAAATGAAGATATTCAGCTCCGCCTAAACTCGATCAAGAAGCTGTCGACGATTGCCCTAGCACTCGGCGAAGAGCGGACGCGCAACGAGCTGATCCCGTTCCTGACCGAGTCCATCTACGACGAGGATGAGGTGCTGCTGGCACTGGCCGAGCAGCTCGGCAACTTTATCCCGCTGGTCGGCGGGCCCGAGTACGCGATGTATCTGATACCGCCGCTCGAATCGCTCGCCACGGTCGAGGAGACGGTGGTGCGCGAGAAGGCGGTCGAGTCGCTCCGTACCGTGGCCGGCCAGCACAGCGCCCAGGATCTGGAGGTGCACCTGGTGCCGACGCTGCAGCGTCTGGTGTCGGGCGACTGGTTCACATCGCGCACGTCCGCCTGCGGCCTGTTCTCCGTGTGCTATCCGCGCGTGTCGGCCGCGGTC]

[+] EMBL BM655062             [CCGCCCACGCGTCCGCAGCATCCGGAACCGGATTTTCAACACTTTGCTCGCGGACACGTTCGGAGCACCAACGCAGTGCGCCTTCCCATCCCGCTCCACCGCACACACAGATACGCAACGGTGAAGGAGAAGACAGAACACCCCGAGGAGGAATAAAACATGGCTGCCAGTGCGAGCGGTGATAAAGCTGCGGATGATTCACTCTATCCGATTGCTGTTTTGATCGATGAGCTGAAAAATGAAGATATTCAGCTCCGCCTAAACTCGATCAAGAAGCTGTCGACGATTGCCCTAGCACTCGGCGAAGAGCGGACGCGCAACGAGCTGATCCCGTTCCTGACCGAGTCCATCTACGACGAGGATGAGGTGCTGCTGGCACTGGCCGAGCAGCTCGGCAACTTTATCCCGCTGGTCGGCGGGCCCGAGTACGCGATGTATCTGATACCGCCGCTCGAATCGCTCGCCACGGTCGAGGAGACGGTGGTGCGCGAGAAGGCGGTCGAGTCGCTCCGTACCGTGGCCGGCCAGCACAGCGCCCAGGATCTGGAGGTGCACCTGGTGCCGACGCTGCAGCGTCTGGTGTCGGGCGACTGGTTCACATCGCGCACGTCCGCCTGCGGCCTGTTCTCCGTGTGCTATCCGCGCGTGTCGGCCGCGGTC]


>consensus_8220#1 CCGCCCACGCGTCCGCAGCATCCGGAACCGGATTTTCAACACTTTGCTCGCGGACACGTT CGGAGCACCAACGCAGTGCGCCTTCCCATCCCGCTCCACCGCACACACAGATACGCAACG GTGAAGGAGAAGACAGAACACCCCGAGGAGGAATAAAACATGGCTGCCAGTGCGAGCGGT GATAAAGCTGCGGATGATTCACTCTATCCGATTGCTGTTTTGATCGATGAGCTGAAAAAT GAAGATATTCAGCTCCGCCTAAACTCGATCAAGAAGCTGTCGACGATTGCCCTAGCACTC GGCGAAGAGCGGACGCGCAACGAGCTGATCCCGTTCCTGACCGAGTCCATCTACGACGAG GATGAGGTGCTGCTGGCACTGGCCGAGCAGCTCGGCAACTTTATCCCGCTGGTCGGCGGG CCCGAGTACGCGATGTATCTGATACCGCCGCTCGAATCGCTCGCCACGGTCGAGGAGACG GTGGTGCGCGAGAAGGCGGTCGAGTCGCTCCGTACCGTGGCCGGCCAGCACAGCGCCCAG GATCTGGAGGTGCACCTGGTGCCGACGCTGCAGCGTCTGGTGTCGGGCGACTGGTTCACA TCGCGCACGTCCGCCTGCGGCCTGTTCTCCGTGTGCTATCCGCGCGTGTCGGCCGCGGTC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8220#0      CCGGAAAATCGGAGGAGAAGCATTGCTCGCTTTTCTCGTCACGAAAGTTGGTGCGTGCGA 60
consensus_8220#1      ------------------------------------------------------------
                                                                                  

consensus_8220#0      ACGGCTGAACCCCACAATCGATAGGGTAGTGTGAAGCGTGACACGGTGTAGTACGAAGAG 120
consensus_8220#1      ------------------------------------------------------------
                                                                                  

consensus_8220#0      AGACGCACAGTTAACGTAAAGTTTTGCGCGAAGCAACAGCATCCGGAACCGGATTTTCGA 180
consensus_8220#1      ---------------------CCGCCCACGCGTCCGCAGCATCCGGAACCGGATTTTCAA 39
                                                * **   *  ********************** *

consensus_8220#0      CACTTTGCTCGCGGACACGTTCGGAGCACCAACGCAGTGCGCCTTCCCATCCCGCTCCAC 240
consensus_8220#1      CACTTTGCTCGCGGACACGTTCGGAGCACCAACGCAGTGCGCCTTCCCATCCCGCTCCAC 99
                      ************************************************************

consensus_8220#0      CGCACACACAGATACGCAACGGTGAAGGAGAAGACAGAACACCCCGAGGAGGAATAAAAC 300
consensus_8220#1      CGCACACACAGATACGCAACGGTGAAGGAGAAGACAGAACACCCCGAGGAGGAATAAAAC 159
                      ************************************************************

consensus_8220#0      ATGGCTGCCAGTGCGAGCGGTGATAAAGCTGCGGATGATTCACTCTATCCGATTGCTGTT 360
consensus_8220#1      ATGGCTGCCAGTGCGAGCGGTGATAAAGCTGCGGATGATTCACTCTATCCGATTGCTGTT 219
                      ************************************************************

consensus_8220#0      TTGATCGATGAGCTGAAAAATGAAGATATTCAGCTCCGCCTAAACTCGATCAAGAAGCTG 420
consensus_8220#1      TTGATCGATGAGCTGAAAAATGAAGATATTCAGCTCCGCCTAAACTCGATCAAGAAGCTG 279
                      ************************************************************

consensus_8220#0      TCGACGATTGCCCTAGCACTCGGCGAAGAGCGGACGCGCAACGAGCTGATCCCGTTCCTG 480
consensus_8220#1      TCGACGATTGCCCTAGCACTCGGCGAAGAGCGGACGCGCAACGAGCTGATCCCGTTCCTG 339
                      ************************************************************

consensus_8220#0      ACCGAGTCCATCTACGACGAGGATGAGGTGCTGCTGGCACTGGCCGAGCAGCTCGGCAAC 540
consensus_8220#1      ACCGAGTCCATCTACGACGAGGATGAGGTGCTGCTGGCACTGGCCGAGCAGCTCGGCAAC 399
                      ************************************************************

consensus_8220#0      TTTATCCCGCTGGTCGGCGGGCCCGAGTACGCGATGTATCTGATACCGCCGCTCGAATCG 600
consensus_8220#1      TTTATCCCGCTGGTCGGCGGGCCCGAGTACGCGATGTATCTGATACCGCCGCTCGAATCG 459
                      ************************************************************

consensus_8220#0      CTCGCCACGGTCGAGGAGACGGTGGTGCGCGAGAAGGCGGTCGAGTCGCTCCGTACCGTG 660
consensus_8220#1      CTCGCCACGGTCGAGGAGACGGTGGTGCGCGAGAAGGCGGTCGAGTCGCTCCGTACCGTG 519
                      ************************************************************

consensus_8220#0      GCCGGCCAGCACAGCGCACAGGATCTGGAGGTGCACCTGGTGCCGACGCTGCAGCGCCTG 720
consensus_8220#1      GCCGGCCAGCACAGCGCCCAGGATCTGGAGGTGCACCTGGTGCCGACGCTGCAGCGTCTG 579
                      ***************** ************************************** ***

consensus_8220#0      GTGTCGGGCGACTGGTTCACATCGCGCACGTCCGCCTGCGGCCTGTTCTCCGTGTGCTAT 780
consensus_8220#1      GTGTCGGGCGACTGGTTCACATCGCGCACGTCCGCCTGCGGCCTGTTCTCCGTGTGCTAT 639
                      ************************************************************

consensus_8220#0      CCGCGCGTGTCTGCCGCGGTCAAGTCGGAGCTGCGCATCAACTTCCGCACGCTCTGCCAG 840
consensus_8220#1      CCGCGCGTGTCGGCCGCGGTC--------------------------------------- 660
                      *********** *********                                       

consensus_8220#0      GACGAGACGCCGATGG 856
consensus_8220#1      ----------------
                                      




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)