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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8220#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 856 fasta sequence
[CCGGAAAATCGGAGGAGAAGCATTGCTCGCTTTTCTCGTCACGAAAGTTGGTGCGTGCGAACGGCTGAACCCCACAATCGATAGGGTAGTGTGAAGCGTGACACGGTGTAGTACGAAGAGAGACGCACAGTTAACGTAAAGTTTTGCGCGAAGCAACAGCATCCGGAACCGGATTTTCGACACTTTGCTCGCGGACACGTTCGGAGCACCAACGCAGTGCGCCTTCCCATCCCGCTCCACCGCACACACAGATACGCAACGGTGAAGGAGAAGACAGAACACCCCGAGGAGGAATAAAACATGGCTGCCAGTGCGAGCGGTGATAAAGCTGCGGATGATTCACTCTATCCGATTGCTGTTTTGATCGATGAGCTGAAAAATGAAGATATTCAGCTCCGCCTAAACTCGATCAAGAAGCTGTCGACGATTGCCCTAGCACTCGGCGAAGAGCGGACGCGCAACGAGCTGATCCCGTTCCTGACCGAGTCCATCTACGACGAGGATGAGGTGCTGCTGGCACTGGCCGAGCAGCTCGGCAACTTTATCCCGCTGGTCGGCGGGCCCGAGTACGCGATGTATCTGATACCGCCGCTCGAATCGCTCGCCA-CGGTCGAGGAGACGGTGGTGCGCGAGAAGGCGGTCGAGTCGCTCCGTACCGTGGCCGGCCAGCACAGCGCACAGGATCTGGAGGTGCACCTGGTGCCGACGCTGCAGCGCCTGGTGTCGGGCGACTGGTTCACATCGCGCACGTCCGCCTGCGGCCTGTTCTCCGTGTGCTATCCGCGCGTGTCTGCCGCGGTCAAGTCGGAGCTGCGCATCAACTTCCGCACGCTCTGCCAGGACGAGACGCCGATGG]
[+] EMBL BM585290 [CCGGAAAATCGGAGGAGAAGCATTGCTCGCTTTTCTCGTCACGAAAGTTGGTGCGTGCGAACGGCTGAACCCCACAATCGATAGGGTAGTGTGAAGCGTGACACGGTGTAGCACGAAGAGAGACGCACAGTTAACGTAAAGTTTTGCGCGAAGCAACAGCATCCGGAACCGGATTTTCGACACTTTGCTCGCGGACACGTTCGGAGCACCAACGCAGTGCGCCTTCCCATCCCGCTCCACCGCACACACAGATACGCAACGGTGAAGGAGAAGACAGAACACCCCGAGGAGGAATAAAACATGGCTGCCAGTGCGAGCGGTGATAAAGCTGCGGATGATTCACTCTATCCGATTGCTGTTTTGATCGATGAGCTGAAAAATGAAGATATTCAGCTCCGCCTAAACTCGATCAAGAAGCTGTCGACGATTGCCCTAGCACTCGGCGAAGAGCGGACGCGCAACGAGCTGATCCCGTTCCTGACCGAGTCCATCTACGACGAGGATGAGGTGCTGCTGGCACTGGCCGAGCAGCTCGGCAACTTTATCCCGCTGGTCGGCGGGCCCGAGTACGCGATGTATCTGATACCGCCGCTCGAATCGCTCGCCA CGGTCGAGGAGACGGTGGTGCGCGAGAAAGCGGTCGAGTCGCTCCGTACCGTGGCCGGCCAGCACAGCGCACAGGATCTGGAGGTGCA ]
[+] EMBL BM647697 [ ccGAAGCATTGCTCGCTTTTCTCGTCACGAAAGTTGGTGCGTGCGAACGGCTGAACCCCACAATCGATAGGGTAGTGTGAAGCGTGACACGGTGTAGTACGAAGAGAGACGCACAGTTAACGTAAAGTTTTGCGCGAAGCAACAGCATCCGGAACCGGATTTTCAACACTTTGCTCGCGGACACGTTCGGAGCACCAACGCAGTGCGCCTTCCCATCCCGCTCCACCGCACACACAGATACGCAACGGTGAAGGAGAAGACAGAACACCCCGAGGAGGAATAAAACATGGCTGCCAGTGCGAGCGGTGATAAAGCTGCGGATGATTCACTCTATCCGATTGCTGTTTTGATCGATGAGCTGAAAAATGAAGATATTCAGCTCCGCCTAAACTCGATCAAGAAGCTGTCGACGATTGCCCTAGCACTCGGCGAAGAGCGGACGCGCAACGAGCTGATCCCGTTCCTGACCGAGTCCATCTACGACGAGGATGAGGTGCTGCTGGCACTGGCCGAGCAGCTCGGCAACTTTATCCCGCTGGTCGGCGGGCCCGAGTACGCGATGTATCTGATACCGCCGCTCGAATCGCTCGCCA CGGTCGAGGAGACGGTGGTGCGCGAGAAGGCGGTCGAGTCGCTCCGTACCGTGGCCGGCCAGCACAGCGCCCAGGATCTGGAGGTGCA ]
[+] EMBL BM653416 [ ccgCGGTGTAGTACGAAGAGAGACGCACGGTTAACGTAAAGTTTTGCGCGAAGCAACAGCATCCGGAACCGGATTTTCAACACTTTGCTCGCGGACACGTTCGGAGCACCAACGCAGTGCGCCTTCCCATCCCGCTCCACCGCACACACAGATACGCAACGGTGAAGGAGAAGACAGAACACCCCGAGGAGGAATAAAACATGGCTGCCAGTGCGAGCGGTGATAAAGCTGCGGATGATTCACTCTATCCGATTGCTGTTTTGATCGATGAGCTGAAAAATGAAGATATTCAGCTCCGCCTAAACTCGATCAAGAAGCTGTCGACGATTGCCCTAGCACTCGGCGAAGAGCGGACGCGCAACGAGCTGATCCCGTTCCTGACCGAGTCCATCTACGACGAGGATGAGGTGCTGCTGGCACTGGCCGAGCAGCTCGGCAACTTTATCCCGCTGGTCGGCGGGCCCGAGTACGCGATGTATCTGATACCGCCGCTCG ]
[+] EMBL AGA284702 [ AGAGACGCACAGTTAACGTAAAGTTTTGCGCGAAGCAACAGCATCCGGAACCGGATTTTCGACACTTTGCTCGCGGACACGTTCGGAGCACCAACGCAGTGCGCCTTCCCATCCCGCTCCACCGCACACACAGATACGCAACGGTGAAGGAGAAGACAGAACACCCCGAGGAGGAATAAAACATGGCTGCCAGTGCGAGCGGTGATAAAGCTGCGGATGATTCACTCTATCCGATTGCTGTTTTGATCGATGAGCTGAAAAATGAAGATATTCAGCTCCGCCTAAACTTGATCAAGAAGCTGTCGACGATTGCCCTAGCACTCGGCGAAGAGCGGACGCGCAACGAGCTGATTCCGTTCCTGACCGA ]
[+] EMBL AGA285811 [ ACCGGATTTTCGACACTTTGCTCGCGGACACGTTCGGAGCACCAACGCAGTGCGCCTTCCCATCCCGCTCCACCGCACACACAGATACGCAACGGTGAAGGAGAAGACAGAACACCCCGAGGAGGAATAAAACATGGCTGCCAGTGCGAGCGGTGATAAAGCTGCGGATGATTCACTCTATCCGATTGCTGTTTTGATCGATGAGCTGAAAAATGAAGATATTCAGCTCCGCCTAAACTCGATCAAGAAGCTGTCGACGATTGCCCTAGCACTCGGCGAAGAGCGGACGCGCAACGAGCTGATCCCGTTCCTGACCGAGTCCATCTACGACGAGGATGAAGTGCTGCTGGCACTGGCCGAGCAGCTCGGCAACTTTATCCCGCTGGGCGGCGGGCCCGAGTACGCGATGTATCTGATACCGCCGCTCGAATCG ]
[-] EMBL AGA284529 [ CGATTGCCNTAGCACTCGGCGAAGAGCGGACGCGCAACGAGCTGATCCCGTTCCTGACCGAGTCCATCTACGACGAGGATGAGGTGCTGCTGGCACTGGCCGAGCAGCTCGGCAACTTTATCCCGCTGGTCGGCGGGCCCGAGTACGCGATGTATCTGATACCGCCGCTCGAATCGCTCGCCA CGGTCGAGGAGACGGTGGTGCGCGAGAAGGCGGTCGAGTCGCTCCGTACCGTGGCCGGCCAGCACAGCGCACAGGATCTGGAGGTGCACCTGGTGCCGACGCTGCAGCGCCTGGTGTCGGGCGACTGGTTCACATCGCGCACGTCCGCCTGCGGCCTGTTCTCCGTGTGCTATCCGCGCGTGTCTGCCGCGGTCAAGTCGGAGCTGCGCATCAACTTCCGCACGCTCTGCCAGGACGAGACGCCGATG ]
[-] EMBL AGA284507 [ AATTTTATCCCGCTGGTCGGCGGGCCCGAGTACGCGATGTATCTGATACCGCCGCTCGAATCGCTCGCCACCGGTCGAGGAGACGGTGGTGCGCGAGAAGGCGGTCGAGTCGCTCCGTACCGTGGCCGGCCGGCACGGCGCACAGGATCTGGAGGTGCACCTGGTGCCGACGCTGCAGCGCCTGGTGTCGGGCGACTGGTTCACATCGCGCACGTCCGCCTGCGGCCTGTTCTCCGTGTGCTATCCGCGCGTGTCTGCCGCGGTCAAGTCGGAGCTGCGCATCAACTTCCGCACGCTCTGCCAGGACGAGACGCCGATG ]
[-] EMBL AGA283408 [ ATACCCCCGCTCGAATCGCTCGCCA CGGTCGAGGAGACGGTGGTGCGCGAGAAGGCGGTCGAGTCGCTCCGTACCGTGGCCGGCCAGCACAGCGCACAGGATCTGGAGGTGCACCTGGTGCCGACGCTGCAGCGCCTGGTGTCGGGCGACTGGTTCACATCGCGCACGTCCGCCTGCGGCCTGTTCTCCGTGTGCTATCCGCGCGTGTCTGCCGCGGTCAAGTCGGAGCTGCGCATCAACTTCCGCACGCTCTGCCAGGACGAGACGCCGATGG]
consensusID : consensus_8220#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 660 fasta sequence
[CCGCCCACGCGTCCGCAGCATCCGGAACCGGATTTTCAACACTTTGCTCGCGGACACGTTCGGAGCACCAACGCAGTGCGCCTTCCCATCCCGCTCCACCGCACACACAGATACGCAACGGTGAAGGAGAAGACAGAACACCCCGAGGAGGAATAAAACATGGCTGCCAGTGCGAGCGGTGATAAAGCTGCGGATGATTCACTCTATCCGATTGCTGTTTTGATCGATGAGCTGAAAAATGAAGATATTCAGCTCCGCCTAAACTCGATCAAGAAGCTGTCGACGATTGCCCTAGCACTCGGCGAAGAGCGGACGCGCAACGAGCTGATCCCGTTCCTGACCGAGTCCATCTACGACGAGGATGAGGTGCTGCTGGCACTGGCCGAGCAGCTCGGCAACTTTATCCCGCTGGTCGGCGGGCCCGAGTACGCGATGTATCTGATACCGCCGCTCGAATCGCTCGCCACGGTCGAGGAGACGGTGGTGCGCGAGAAGGCGGTCGAGTCGCTCCGTACCGTGGCCGGCCAGCACAGCGCCCAGGATCTGGAGGTGCACCTGGTGCCGACGCTGCAGCGTCTGGTGTCGGGCGACTGGTTCACATCGCGCACGTCCGCCTGCGGCCTGTTCTCCGTGTGCTATCCGCGCGTGTCGGCCGCGGTC]
[+] EMBL BM655062 [CCGCCCACGCGTCCGCAGCATCCGGAACCGGATTTTCAACACTTTGCTCGCGGACACGTTCGGAGCACCAACGCAGTGCGCCTTCCCATCCCGCTCCACCGCACACACAGATACGCAACGGTGAAGGAGAAGACAGAACACCCCGAGGAGGAATAAAACATGGCTGCCAGTGCGAGCGGTGATAAAGCTGCGGATGATTCACTCTATCCGATTGCTGTTTTGATCGATGAGCTGAAAAATGAAGATATTCAGCTCCGCCTAAACTCGATCAAGAAGCTGTCGACGATTGCCCTAGCACTCGGCGAAGAGCGGACGCGCAACGAGCTGATCCCGTTCCTGACCGAGTCCATCTACGACGAGGATGAGGTGCTGCTGGCACTGGCCGAGCAGCTCGGCAACTTTATCCCGCTGGTCGGCGGGCCCGAGTACGCGATGTATCTGATACCGCCGCTCGAATCGCTCGCCACGGTCGAGGAGACGGTGGTGCGCGAGAAGGCGGTCGAGTCGCTCCGTACCGTGGCCGGCCAGCACAGCGCCCAGGATCTGGAGGTGCACCTGGTGCCGACGCTGCAGCGTCTGGTGTCGGGCGACTGGTTCACATCGCGCACGTCCGCCTGCGGCCTGTTCTCCGTGTGCTATCCGCGCGTGTCGGCCGCGGTC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8220#0 CCGGAAAATCGGAGGAGAAGCATTGCTCGCTTTTCTCGTCACGAAAGTTGGTGCGTGCGA 60
consensus_8220#1 ------------------------------------------------------------
consensus_8220#0 ACGGCTGAACCCCACAATCGATAGGGTAGTGTGAAGCGTGACACGGTGTAGTACGAAGAG 120
consensus_8220#1 ------------------------------------------------------------
consensus_8220#0 AGACGCACAGTTAACGTAAAGTTTTGCGCGAAGCAACAGCATCCGGAACCGGATTTTCGA 180
consensus_8220#1 ---------------------CCGCCCACGCGTCCGCAGCATCCGGAACCGGATTTTCAA 39
* ** * ********************** *
consensus_8220#0 CACTTTGCTCGCGGACACGTTCGGAGCACCAACGCAGTGCGCCTTCCCATCCCGCTCCAC 240
consensus_8220#1 CACTTTGCTCGCGGACACGTTCGGAGCACCAACGCAGTGCGCCTTCCCATCCCGCTCCAC 99
************************************************************
consensus_8220#0 CGCACACACAGATACGCAACGGTGAAGGAGAAGACAGAACACCCCGAGGAGGAATAAAAC 300
consensus_8220#1 CGCACACACAGATACGCAACGGTGAAGGAGAAGACAGAACACCCCGAGGAGGAATAAAAC 159
************************************************************
consensus_8220#0 ATGGCTGCCAGTGCGAGCGGTGATAAAGCTGCGGATGATTCACTCTATCCGATTGCTGTT 360
consensus_8220#1 ATGGCTGCCAGTGCGAGCGGTGATAAAGCTGCGGATGATTCACTCTATCCGATTGCTGTT 219
************************************************************
consensus_8220#0 TTGATCGATGAGCTGAAAAATGAAGATATTCAGCTCCGCCTAAACTCGATCAAGAAGCTG 420
consensus_8220#1 TTGATCGATGAGCTGAAAAATGAAGATATTCAGCTCCGCCTAAACTCGATCAAGAAGCTG 279
************************************************************
consensus_8220#0 TCGACGATTGCCCTAGCACTCGGCGAAGAGCGGACGCGCAACGAGCTGATCCCGTTCCTG 480
consensus_8220#1 TCGACGATTGCCCTAGCACTCGGCGAAGAGCGGACGCGCAACGAGCTGATCCCGTTCCTG 339
************************************************************
consensus_8220#0 ACCGAGTCCATCTACGACGAGGATGAGGTGCTGCTGGCACTGGCCGAGCAGCTCGGCAAC 540
consensus_8220#1 ACCGAGTCCATCTACGACGAGGATGAGGTGCTGCTGGCACTGGCCGAGCAGCTCGGCAAC 399
************************************************************
consensus_8220#0 TTTATCCCGCTGGTCGGCGGGCCCGAGTACGCGATGTATCTGATACCGCCGCTCGAATCG 600
consensus_8220#1 TTTATCCCGCTGGTCGGCGGGCCCGAGTACGCGATGTATCTGATACCGCCGCTCGAATCG 459
************************************************************
consensus_8220#0 CTCGCCACGGTCGAGGAGACGGTGGTGCGCGAGAAGGCGGTCGAGTCGCTCCGTACCGTG 660
consensus_8220#1 CTCGCCACGGTCGAGGAGACGGTGGTGCGCGAGAAGGCGGTCGAGTCGCTCCGTACCGTG 519
************************************************************
consensus_8220#0 GCCGGCCAGCACAGCGCACAGGATCTGGAGGTGCACCTGGTGCCGACGCTGCAGCGCCTG 720
consensus_8220#1 GCCGGCCAGCACAGCGCCCAGGATCTGGAGGTGCACCTGGTGCCGACGCTGCAGCGTCTG 579
***************** ************************************** ***
consensus_8220#0 GTGTCGGGCGACTGGTTCACATCGCGCACGTCCGCCTGCGGCCTGTTCTCCGTGTGCTAT 780
consensus_8220#1 GTGTCGGGCGACTGGTTCACATCGCGCACGTCCGCCTGCGGCCTGTTCTCCGTGTGCTAT 639
************************************************************
consensus_8220#0 CCGCGCGTGTCTGCCGCGGTCAAGTCGGAGCTGCGCATCAACTTCCGCACGCTCTGCCAG 840
consensus_8220#1 CCGCGCGTGTCGGCCGCGGTC--------------------------------------- 660
*********** *********
consensus_8220#0 GACGAGACGCCGATGG 856
consensus_8220#1 ----------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||