|
These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8221#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 2068 fasta sequence
[GAATTTAGCGAAAGCAAACGGAACCGATCAGCAAAATCGGTTGAATGTTTACGCATTTAGTAAGAGATACACAGATACAGAGATAAATACACATTTTAACATGTTTGCGGGGATGAATACGTAGCTCGTAAGCAGTGTACATTTCAGAACCGTACGTAAGCCGATAGAGATCCTGGGTTTGTCCAGGCAATGCTCCTGGAGGAACTGATTTTAGTTTTTACCTTATTGTGTATCCCCAACCGTGTATTGGTGGCGTTTATTGTTAAACGAAATAAGCGCACAGATACACATCCTTGCTTTTCTTGCATACTTAAAGGACGTTCGTGTGAAGCAACTGTTTAACAAATTGTTTCGAAACGCCGGAATGCAGAAAGCAAGCGAGCGTTAAGAAAAATGGCGAATGGAAGGCATACAAGAATAGCTAGCAAAAGGTTCAACTTTTTTTTAATACATAAGTAAATCGAAACAAATTTAAAGTAAAACACACAAGTAATGATAAAATGGAATGCAAAAAAAATGAAAAAGAAAGAGACGAAACATAAAAGAAAAGCAAATTAAGAATACGTAAAAGTGAGCAGGTGAAAGTAGTTGAAGAGGACGAGAAAAAAGGGTAACGAAATGCAATATTATGAGCGAACGGGAAAACCCATTGGAAGGAAACAATAATTTTATGCAAACAACAAAACAGCAAACAACAAAATGTGAAAAGCTGATCAAAACAGCACAAAAACAAATGCCCCCCTCATTGTAGTATGTAAAGTAGAAAAGCAAGCACATTTTGTTAACTTATTGTCCGTAAGTCTTCTATTGATTAGTTCTTAGGGTGAACAAAGCAGAATCTTTTGCACAACAACAACGACGACAACAAGTCCCTTCCAATAAGACAGCCCCTTCCCGGCTTTGCAGGACTCGCGACGAAAGCAGGGAGCAAGGACGACAGGTTGTTGTTTTCGTTTTAATCGGTTAGGTTTCGTTTCGTTTCCGGTTGAATTTTTGTTGGGTAGGGGGTACTTTAACCGTTTTGGGGCGCGATCGATCTGCTGCATGTGACGGATCGTGTACATAAGAACGTTGGCGGTGAGTTTTGGTTTGTGTTTCAAATCAGCGCATATACACACAGCGATAAGGTGATCGTGGTGTTTGTTTCACAAAATTAACCAGATCGAGTATTTAGAAACGTCTCAAGCCAACCAGCAAATCATAAAGATTCCTTTATGGAACACAAAAAGGGAAAATAACACAAAAAACACGAAAATTGTGCAGTAACATTGTTTACAGTAATTTAAACTTGCCCAAGGTATAGTCAAGAGTCGGAAGCAAATGAAGGATAAAACTAATGTATTATTAAGTACGCTTAACCAGCGTGTTTCGAGGGTAGCGTAGTAATTTATCGAGATTCATTCGGCTTCAGGAAGGGAAAATAAATGAAACAAAAGCCGCTGGAATGTAGGAATGCAAAACACTTTTCGTTTCGTAATTCAGTCGAGTCGGTTAGGGTTAGTTGCTGTTCAGCTGAAGAAGTTGAAACTCCGATTCCACGGTACAACACACAACACGCACATCCACATCAACAGCACACACACATGCACAGACAACTCAAGCGACAGCAGCAAACAAAAAAAGAAACAAAGCTACAGCAAACAAGCAAACATAAATAAAAGCGAAACAATAAACAAATGTCTAGGGAAGAGAACGAGATGAGGGAACACGGGAAGGCAAACAAGGTAATGCAAATTGTAAATACTTATTATCATATCATTATATTATATTGTATTGATTAATATTATTAAAACAAAACACACAAAACACACAAGTAATGGTAATACATTATTGCATTGAAGATAAAAGGAAAAAACAAACGCGGTAGACAAACGGGTGGATAACGCCCGCAAATGCGTGCAAAAACGCGGAAAAAGCGCATAAATACACACAAGTTGTAGCGAAAGACGAAGAAGAAGAAGAAGCAGACCGACGTACAGCGTACAGTAATGGAAGTATAAATTATATTGTCTTCTTTATGAATTTCTATCCAATAAAAGGAAAAATAAAATATTATCTGTAATGAATA]
[-] EMBL AGA283312 [GAATTTAGCGAAAGCAAACGGAACCGATCAGCAAAATCGGTTGAATGTTTACGCATTTAGTAAGAGATACACAGATACAGAGATAAATACACATTTTAACATGTTTGCGGGGATGAATACGTAGCTCGTAAGCAGTGTACATTTCAGAACCGTACGTAAGCCGATAGAGATCCTGGGTTTGTCCAGGCAATGCTCCTGGAGGAACTGATTTTAGTTTTTACCTTATTGTGTATCCCCAACCGTGTATTGGTGGCGTTTATTGTTAAACGAAATAAGCGCACAGATACACATCCTTGCTTTTCTTGCATACTTAAAGGACGTTCGTGTGAAGCAACTGTTTAACAAATTGTTTCGAAACGCCGGAATGCAGAAAGCAAGCGAGCGTTAAGAAAAATGGCGAATGGAAGGCATACAAGAATAGCTAGCAAAAGGTTCAACTTTTTTTTAATACATAAGTAAATCGAAACAAATTTAAAGTAAAACACACAAGTAATGATAAAATGGAATGCAAAAAAAA ]
[+] EMBL BX610338 [ AAGGACGTTCGTGTGAAGCAACTGTTTAACAAATTGTTTCTTAACGCCGGAATGCAGAAAGCAAGCGAGCGTTAAGAAAAATGGCGAATGGAAGGCATACAAGAATAGCTAGCAAAAGGTTCAACTTTTTTTTAATACATAAGTAAATCGAAACAAATTTAAAGTAAAACACACAAGTAATGATAAAATGGAATGCAAAAAAAATGAAAAAGAAAGAGACGAAACATAAAAGAAAAGCAAATTAAGAATACGTAAAAGTGAGCAGGTGAAAGTAGTTGAAGAGGACGAGAAAAAAGGGTAACGAAATGCAATATTATGAGCGAACGGGAAAACCCATTGGAAGGAAACAATAATTTTATGCAAACAACAAAACAGCAAACAACAAAATGTGAAAAGCTGATCAAAACAGCACAAAAACAAATGCCCCCCTCATTGTAGTATGTAAAGTAGAAAAGCAAGCACATTTTGTTAACTTATTGTCCGTAAGTCTTCTATTGATTAGTTCTTAGGGTGAACAAAGCAGAATCTTTTGCACAACAACAACGACGACAACAAGTCCCTTCCAATAAGACAGCCCCTTCCCGGCTTTGCAGGACTCGCGACGAAAGCAGGGAGCAAGGACGACAGGTTGTTGTTTTCGTTTTAATCGGTTAGGTTTCGTTTCGTTTCCGGTTGAATTTTTGTTGGGTAGGGGGTACTTTAACCGTTTTGGGGC ]
[+] EMBL BX625734 [ GTCCCTTCCAATAAGACAGCCCCTTCCCGGCTTTGCAGGACTCGCGACGAAAGCAGGGAGCAAGGACGACAGGTTGTTGTTTTCGTTTTAATCGGTTAGGTTTCGTTTCGTTTCCGGTTGAATTTTTGTTGGGTAGGGGGTACTTTAACCGTTTTGGGGCGCGATCGATCTGCTGCATGTGACGGATCGTGTACATAAGAACGTTGGCGGTGAGTTTTGGTTTGTGTTTCAAATCAGCGCATATACACACAGCGATAAGGTGATCGTGGTGTTTGTTTCACAAAATTAACCAGATCGAGTATTTAGAAACGTCTCAAGCCAACCAGCAAATCATAAAGATTCCTTTATGGAACACAAAAAGGGAAAATAACACAAAAAACACGAAAATTGTGCAGTAACATTGTTTACAGTAATTTAAACTTGCCCAAGGTATAGTCAAGAGTCGGAAGCAAATGAAGGATAAAACTAATGTATTATTAAGTACGCTTAACCAGCGTGTTTCGAGGGTAGCGTAGTAATTTATCGAGATTCATTCGGCTTCAGGAAGGGAAAATAAATGAAACAAAAGCCGCTGGAATGTAGGAATGCAAAACACTTTTCGTTTCGTAATTCAGTCGAGTCGGTTAGGGTTAGTTGCTGTTCAGCTGAAGAAGTTGAAACTCCGATTCCACGGTACAACACACAACACGCACATCCACATCAACAGCACACACACATGCACAGACAACTCAAGCGAC ]
[+] EMBL BX615022 [ CCAACCAGCAAATCATAAAGATTCCTTTATGGAACACAAAAAGGGAAAATAACACAAAAAACACGAAAATTGTGCAGTAACATTGTTTACAGTAATTTAAACTTGCCCAAGGTATAGTCAAGAGTCGGAAGCAAATGAAGGATAAAACTAATGTATTATTAAGTACGCTTAACCAGCGTGTTTCGAGGGTAGCGTAGTAATTTATCGAGATTCATTCGGCTTCAGGAAGGGAAAATAAATGAAACAAAAGCCGCTGGAATGTAGGAATGCAAAACACTTTTCGTTTCGTAATTCAGTCGAGTCGGTTAGGGTTAGTTGCTGTTCAGCTGAAGAAGTTGAAACTCCGATTCCACGGTACAACACACAACACGCACATCCACATCAACAGCACACACACATGCACAGACAACTCAAGCGACAGCAGCAAACAAAAAAAGAAACAAAGCTACAGCAAACAAGCAAACATAAATAAAAGCGAAACAATAAACAAATGTCTAGGGAAGAGAACGAGATGAGGGAACACGGGAAGGCAAACAAGGTAATGCAAATTGTAAATACTTATTATCATATCATTATATTATATTGTATTGATTAATATTATTAAAACAAAACACACAAAACACACAAGTA ]
[+] EMBL BX611702 [ AGGTATAGTCAAGAGTCGGAAGCAAATGAAGGATAAAACTAATGTATTATTAAGTACGCTTAACCAGCGTGTTTCGAGGGTAGCGTAGTAATTTATCGAGATTCATTCGGCTTCAGGAAGGGAAAATAAATGAAACAAAAGCCGCTGGAATGTAGGAATGCAAAACACTTTTCGTTTCGTAATTCAGTCGAGTCGGTTAGGGTTAGTTGCTGTTCAGCTGAAGAAGTTGAAACTCCGATTCCACGGTACAACACACAACACGCACATCCACATCAACAGCACACACACATGCACAGACAACTCAAGCGACAGCA ]
[+] EMBL BX611968 [ TTAAGTACGCTTAACCAGCGTGTTTCGAGGGTAGCGTAGTAATTTATCGAGATTCATTCGGCTTCAGGAAGGGAAAATAAATGAAACAAAAGCCGCTGGAATGTAGGAATGCAAAACACTTTTCGTTTCGTAATTCAGTCGAGTCGGTTAGGGTTAGTTGCTGTTCAGCTGAAGAAGTTGAAACTCCGATTCCACGGTACAACACACAACACGCACATCCACATCAACAGCACACACACATGCACAGACAACTCAAGCGACAGCAGCAAACAAAAAAAGAAACAAAGCTACAGCAAACAAGCAAACATAAATAAAAGCGAAACAATAAACAAATGTCTAGGGAAGAGAACGAGATGAGGGAACACGGGAAGGCAAACAAGGTAATGCAAATTGTAAATACTTATTATCATATCATTATATTATATTGTATTGATTAATATTATTAAAACAAAACACACAAAACACACAAGTAATGGTAATACATTATTGCATTGAAGATAAAAGGAAAAAACAAACGCGGTAGACAAACGGGTGGATAACGCCCGCAAATGCGTGCAAAAACGCGGAAAAAGCGCATAAATACACACAAGTTGTAGCGAAAGACGAAGAAGAAGAAGAAGCAGACCGACGTACAGCGTACAGTAATGGAAGTATAAATTATATTGTCTTCTTTAT ]
[+] EMBL BX615774 [ AAAATAAATGAAACAAAAGCCGCTGGAATGTAGGAATGCAAAACACTTTTCGTTTCGTAATTCAGTCGAGTCGGTTAGGGTTAGTTGCTGTTCAGCTGAAGAAGTTGAAACTCCGATTCCACGGTACAACACACAACACGCACATCCACATCAACAGCACACACACATGCACAGACAACTCAAGCGACAGCAGCAAACAAAAAAAGAAACAAAGCTACAGCAAACAAGCAAACATAAATAAAAGCGAAACAATAAACAAATGTCTAGGGAAGAGAACGAGATGAGGGAACACGGGAAGGCAAACAAGGTAATGCAAATTGTAAATACTTATTATCATATCATTATATTATATTGTATTGATTAATATTATTAAAACAAAACACACAAAACACACAAGTAATGGTAATACATTATTGCATTGAAGATAAAAGGAAAAAACAAACGCGGTAGACAAACGGGTGGATAACGCCCGCAAATGCGTGC ]
[-] EMBL BX611701 [ AACATAAATAAAAGCGAACCAATAAACAAATGTCTAGGGAAGAGAACGAGATGAGGGAACACGGGAAGGCAAACAAGGTAATGCAAATTGTAAATACTTATTATCATATCATTATATTATATTGTATTGATTAATATTATTAAAACAAACCACCCAAAACACCCAAGTAATGGTAATACATTATTGCATTGAAGATAAAAGGAAAAAACAAACGCGGTAGACAAACGGGTGGATAACGCCCGCAAATGCGTGCAAAAACGCGGAAAAAGCGCATAAATACACACAAGTTGTAGCGAAAGACGAAGAAGAAGAAGAAGCAGCCCGACGTACAGCGTACAGTAATGGAAGTATAAATTATATTGTCTTCTTTATGAATTTCTATCCAATAAAAGGAAAAATAAAATATTATCTGTAATGAATA]
consensusID : consensus_8221#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 362 fasta sequence
[GCAGATTCCNGCACGAGGCGCACATGCTGTTTTTTTTNCTTTTTTTTTCAATGCAAATGTAAATACTTATTATCATATCATTATATTATATTGTATTGATTAATATTATTAAAACAAAACACACAAAACACACAAGTAATGGTAATACATTATTGCATTGAAGATAAAAGGAAAAAACAAACGCGGTAGACAAACGGGTGGATAAACGCCCGCAAATGCGTGCAAAAACGCGGAAAAAGCGCATAAATACACACAAGTTGTAGCGAAAGACGAAGAAGAAGAAGAAGCAGACCGACGTACAGCGTACAGTAATGGAAGTATAACATTATATTGTCTTCTCTTATGAATTTCTATACAATAAA]
[+] EMBL BX468531 [GCAGATTCCNGCACGAGGCGCACATGCTGTTTTTTTTNCTTTTTTTTTCAATGCAAATGTAAATACTTATTATCATATCATTATATTATATTGTATTGATTAATATTATTAAAACAAAACACACAAAACACACAAGTAATGGTAATACATTATTGCATTGAAGATAAAAGGAAAAAACAAACGCGGTAGACAAACGGGTGGATAAACGCCCGCAAATGCGTGCAAAAACGCGGAAAAAGCGCATAAATACACACAAGTTGTAGCGAAAGACGAAGAAGAAGAAGAAGCAGACCGACGTACAGCGTACAGTAATGGAAGTATAACATTATATTGTCTTCTCTTATGAATTTCTATACAATAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8221#0 GAATTTAGCGAAAGCAAACGGAACCGATCAGCAAAATCGGTTGAATGTTTACGCATTTAG 60
consensus_8221#1 ------------------------------------------------------------
consensus_8221#0 TAAGAGATACACAGATACAGAGATAAATACACATTTTAACATGTTTGCGGGGATGAATAC 120
consensus_8221#1 ------------------------------------------------------------
consensus_8221#0 GTAGCTCGTAAGCAGTGTACATTTCAGAACCGTACGTAAGCCGATAGAGATCCTGGGTTT 180
consensus_8221#1 ------------------------------------------------------------
consensus_8221#0 GTCCAGGCAATGCTCCTGGAGGAACTGATTTTAGTTTTTACCTTATTGTGTATCCCCAAC 240
consensus_8221#1 ------------------------------------------------------------
consensus_8221#0 CGTGTATTGGTGGCGTTTATTGTTAAACGAAATAAGCGCACAGATACACATCCTTGCTTT 300
consensus_8221#1 ------------------------------------------------------------
consensus_8221#0 TCTTGCATACTTAAAGGACGTTCGTGTGAAGCAACTGTTTAACAAATTGTTTCGAAACGC 360
consensus_8221#1 ------------------------------------------------------------
consensus_8221#0 CGGAATGCAGAAAGCAAGCGAGCGTTAAGAAAAATGGCGAATGGAAGGCATACAAGAATA 420
consensus_8221#1 ------------------------------------------------------------
consensus_8221#0 GCTAGCAAAAGGTTCAACTTTTTTTTAATACATAAGTAAATCGAAACAAATTTAAAGTAA 480
consensus_8221#1 ------------------------------------------------------------
consensus_8221#0 AACACACAAGTAATGATAAAATGGAATGCAAAAAAAATGAAAAAGAAAGAGACGAAACAT 540
consensus_8221#1 ------------------------------------------------------------
consensus_8221#0 AAAAGAAAAGCAAATTAAGAATACGTAAAAGTGAGCAGGTGAAAGTAGTTGAAGAGGACG 600
consensus_8221#1 ------------------------------------------------------------
consensus_8221#0 AGAAAAAAGGGTAACGAAATGCAATATTATGAGCGAACGGGAAAACCCATTGGAAGGAAA 660
consensus_8221#1 ------------------------------------------------------------
consensus_8221#0 CAATAATTTTATGCAAACAACAAAACAGCAAACAACAAAATGTGAAAAGCTGATCAAAAC 720
consensus_8221#1 ------------------------------------------------------------
consensus_8221#0 AGCACAAAAACAAATGCCCCCCTCATTGTAGTATGTAAAGTAGAAAAGCAAGCACATTTT 780
consensus_8221#1 ------------------------------------------------------------
consensus_8221#0 GTTAACTTATTGTCCGTAAGTCTTCTATTGATTAGTTCTTAGGGTGAACAAAGCAGAATC 840
consensus_8221#1 ------------------------------------------------------------
consensus_8221#0 TTTTGCACAACAACAACGACGACAACAAGTCCCTTCCAATAAGACAGCCCCTTCCCGGCT 900
consensus_8221#1 ------------------------------------------------------------
consensus_8221#0 TTGCAGGACTCGCGACGAAAGCAGGGAGCAAGGACGACAGGTTGTTGTTTTCGTTTTAAT 960
consensus_8221#1 ------------------------------------------------------------
consensus_8221#0 CGGTTAGGTTTCGTTTCGTTTCCGGTTGAATTTTTGTTGGGTAGGGGGTACTTTAACCGT 1020
consensus_8221#1 ------------------------------------------------------------
consensus_8221#0 TTTGGGGCGCGATCGATCTGCTGCATGTGACGGATCGTGTACATAAGAACGTTGGCGGTG 1080
consensus_8221#1 ------------------------------------------------------------
consensus_8221#0 AGTTTTGGTTTGTGTTTCAAATCAGCGCATATACACACAGCGATAAGGTGATCGTGGTGT 1140
consensus_8221#1 ------------------------------------------------------------
consensus_8221#0 TTGTTTCACAAAATTAACCAGATCGAGTATTTAGAAACGTCTCAAGCCAACCAGCAAATC 1200
consensus_8221#1 ------------------------------------------------------------
consensus_8221#0 ATAAAGATTCCTTTATGGAACACAAAAAGGGAAAATAACACAAAAAACACGAAAATTGTG 1260
consensus_8221#1 ------------------------------------------------------------
consensus_8221#0 CAGTAACATTGTTTACAGTAATTTAAACTTGCCCAAGGTATAGTCAAGAGTCGGAAGCAA 1320
consensus_8221#1 ------------------------------------------------------------
consensus_8221#0 ATGAAGGATAAAACTAATGTATTATTAAGTACGCTTAACCAGCGTGTTTCGAGGGTAGCG 1380
consensus_8221#1 ------------------------------------------------------------
consensus_8221#0 TAGTAATTTATCGAGATTCATTCGGCTTCAGGAAGGGAAAATAAATGAAACAAAAGCCGC 1440
consensus_8221#1 ------------------------------------------------------------
consensus_8221#0 TGGAATGTAGGAATGCAAAACACTTTTCGTTTCGTAATTCAGTCGAGTCGGTTAGGGTTA 1500
consensus_8221#1 ------------------------------------------------------------
consensus_8221#0 GTTGCTGTTCAGCTGAAGAAGTTGAAACTCCGATTCCACGGTACAACACACAACACGCAC 1560
consensus_8221#1 ------------------------------------------------------------
consensus_8221#0 ATCCACATCAACAGCACACACACATGCACAGACAACTCAAGCGACAGCAGCAAACAAAAA 1620
consensus_8221#1 ------------------------------------------------------------
consensus_8221#0 AAGAAACAAAGCTACAGCAAACAAGCAAACATAAATAAAAGCGAAACAATAAACAAATGT 1680
consensus_8221#1 ----------------------------------------------------GCAGATTC 8
** **
consensus_8221#0 CTAGGGAAGAGAACGAGATGAGGGAACACGGGAAGGCAAACAAGGTAATGCAAATTGTAA 1740
consensus_8221#1 CN--GCACGAGGCGCACATGCTGTTTTTTTTNC---TTTTTTTTTCAATGCAAAT-GTAA 62
* * * *** * *** * ********* ****
consensus_8221#0 ATACTTATTATCATATCATTATATTATATTGTATTGATTAATATTATTAAAACAAAACAC 1800
consensus_8221#1 ATACTTATTATCATATCATTATATTATATTGTATTGATTAATATTATTAAAACAAAACAC 122
************************************************************
consensus_8221#0 ACAAAACACACAAGTAATGGTAATACATTATTGCATTGAAGATAAAAGGAAAAAACAAAC 1860
consensus_8221#1 ACAAAACACACAAGTAATGGTAATACATTATTGCATTGAAGATAAAAGGAAAAAACAAAC 182
************************************************************
consensus_8221#0 GCGGTAGACAAACGGGTGGATAA-CGCCCGCAAATGCGTGCAAAAACGCGGAAAAAGCGC 1919
consensus_8221#1 GCGGTAGACAAACGGGTGGATAAACGCCCGCAAATGCGTGCAAAAACGCGGAAAAAGCGC 242
*********************** ************************************
consensus_8221#0 ATAAATACACACAAGTTGTAGCGAAAGACGAAGAAGAAGAAGAAGCAGACCGACGTACAG 1979
consensus_8221#1 ATAAATACACACAAGTTGTAGCGAAAGACGAAGAAGAAGAAGAAGCAGACCGACGTACAG 302
************************************************************
consensus_8221#0 CGTACAGTAATGGAAGTATAA-ATTATATTGTCTTCT-TTATGAATTTCTATCCAATAAA 2037
consensus_8221#1 CGTACAGTAATGGAAGTATAACATTATATTGTCTTCTCTTATGAATTTCTATACAATAAA 362
********************* *************** ************** *******
consensus_8221#0 AGGAAAAATAAAATATTATCTGTAATGAATA 2068
consensus_8221#1 -------------------------------
|
| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||