These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8232#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 1582 fasta sequence [AATTNCAGAGCCAGTTTATGAGCANCTCGATCGTGCGGGACGCGGCCGCCGGTGCCGCCCGTGCCTCCGTCTCGAGCACCCTGAACAGGTACTAGA------GGAGTGGCGCATTAGATATGCGTACGCCAATTTCCTCTTCCTCCTCCTCACTACTTTCATTGCTACTTCTACTTCTGAATTGCCAACACA---CCCCCCCCCCCCCCTCACACACACACAAACGCAATACGAACTGTTACGTTATTATTACTATTACTACTTACATCCCTATTACTCCCCTACAAAACAACTCGACATCAAGATCTACCGTGTTTAATTATCAGCACTACCACCTTCCTTTACCTCTTTTGCGAAACTCGTATGCTTCGAATGCTTCCATCCCGAAGCTTGTGTTGGGACATTACTTTCCATTATTATTCCCTGTTTCCCTTTTGCCGATGGACAGGCGGTGCGGCATAGATCTATGATGTCTCTATGATGTCCCCAAGCATACGAAAAAGTAAAAAAATCGATCAAAAATAGAACGTTTCGCAATTCGTGCTGCTTTAGCAGAACAGTTCTAAGATTCCCGTTTGCTCCCTTATGGTATTAGATGTTTAGTAGTGACCTTATTTCCCCCCCCTTTTTGCTAGTAGTAATCTTTCACAACTTCCTGACGCGAATCCGTTATATTGTAGTGCCTTACATATTTTGTTTCGGGGGAAGCGCGACTTTCTTTTTCTTTGTTATGTTTAATCGTTGCTTTTTGATAGGGAAAAGGTAGTGCACGGTGGTGACCACCTATCCTTTTTTCATTCGATGTTTTGATTTACCGTTCTATTGTGACCTGTCTGTGGTGCGGTTCTCCAACACTTTTGTCTGGTGTTTGGTGTTACTACGGCCGTACGTAATATAACTAACAGGCAGATAAAAAATGGAGTAAAATGTAAATGGCAATGCACGATAATCATCGGTCTCATTCAATTCCGTCACTTAACCAAAGCGGAACGGAGTAAGGAAGTGGCGTTTAACGATGGGCATTGCTGTTGAGCAATGGAAATGAATTAACGTTTACACCACTGCGCCACGTGCTGTTAACACGTTTACGTTAACAGTTTTTTTTTCTTCTTTTTTTTCTACTAACTTTATGTGATCATGATTGGGAGGGTCGCGCCTTTTCTTTCTGCTATTAATGCAACACGTTTGAGTTGAATGTTAGCTCCCGAGCGCATTAAAGATTGATTCATTAGTTTAGGCAAAGCAGACAGAAAAACAAATCCATCAATAAATAAAGCGGTAGGGCTCGCGGCATTGCTGTTTCTCCGCAATTCACAGCAATTTATATGATGCAGTCGATGCAGTTAGGCGATGAGTCCATGAGTGTAGGAAAGTGACTGTTTAAGTATGTTTAAATTAAAAAAAAAACAACAACTATTTGAGCTAATAGTGTGCAAAATTGGGACGCCGCGGCACGGAATGACGGGTGCGGATGAGATAAAAGCCACGCTGCACGAATCATTATCATGGAAAACTTTACTTATGATTTATATTTATCTTAGATTTACGATGACGTGACCGAGAGATAAAACCGAAAACACTATTACACGAA] [+] EMBL BX627803 [AATTNCAGAGCCAGTTTATGAGCANCTCGATCGTGCGGGACGCGGCCGCCGGTGCCGCCCGTGCCTCCGTCTCGAGCACCCTGAACAGGTACTAGAGGAGTGGGAGTGGCGCATTAGATATGCGTACGCCAATTTCCTCTTCCTCCTCCTCACTACTTTCATTGCTACTTCTACTTCTGAATTGCCAACACA CCCCCCCCCCCCCCTCACACACACACAAACGCAATACGAACTGTTACGTTATTATTACTATTACTACTTACATCCCTATTACTCCCCTACAAAACAACTCGACATCAAGATCTACCGTGTTTAATTATCAGCACTACCACCTTCCTTTACCTCTTTTGCGAAACTCGTATGCTTCGAATGCTTCCATCCCGAAGCTTGTGTTGGGACATTACTTTCCATTATTATTCCCTGTTTCCCTTTTGCCGATGGACAGGCGGTGCGGCATAGATCTATGATGTCTCTATGATGTCCCCAAGCATACGAAAAAGTAAAAAAATCGATCAAAAATAGAACGTTTCGCAATTCGTGCTGCTTTAGCAGAACAGTTCTAAGATTCCCGTTTGCTCCCTTATGGTATTAGATGTTTAGTAGTGACCTTATTTCCCCCCCCTTTTTGCTAGTAGTAATCTTTCACAACTTCCTGACGCGAATC ] [+] EMBL BX607194 [ ATCGTGCGGGACGCGGCCGCCGGTGCCGCCCGTGCCTCCGTCTCGAGCACCCTGAACAGGTACTAGA GGAGTGGCGCATTAGATATGCGTACGCCAATTTCCTCTTCCTCCTCCTCACTACTTTCATTGCTACTTCTACTTCTGAATTGCCAACACACCCCCCCCCCCCCCCCCTCACACACACACAAACGCAATACGAACTGTTACGTTATTATTACTATTACTACTTACATCCCTATTACTCCCCTACAAAACAACTCGACATCAAGATCTACCGTGTTTAATTATCAGCACTACCACCTTCCTTTACCTCTTTTGCGAAACTCGTATGCTTCGAATGCTTCCATCCCGAAGCTTGTGTTGGGACATTACTTTCCATTATTATTCCCTGTTTCCCTTTTGCCGATGGACAGGCGGTGCGGCATAGATCTATGATGTCTCTATGATGTCCCCAAGCATACGAAAAAGTAAAAAAATCGATCAAAAATAGAACGTTTCGCAATTCGTGCTGCTTTAGCAAAACAGTTCTAAGATTCCCGTTTGCTCCCTTATGGTATTAGATGTTTAGTAGTGACCTTATTTTCCCCCCCTTTTTGCTAGTAGTAATCTTTCACAACTTCCTGACGCGAATCCGTTATATTGTAGTGCCTTACATATTTTGTTTCGGGGGAAGCGCGACT ] [+] EMBL BX626926 [ TTGCGAAACTCGTATGCTTCGAATGCTTCCATCCCGAAGCTTGTGTTGGGACATTACTTTCCATTATTATTCCCTGTTTCCCTTTTGCCGATGGACAGGCGGTGCGGCATAGATCTATGATGTCTCTATGATGTCCCCAAGCATACGAAAAAGTAAAAAAATCGATCAAAAATAGAACGTTTCGCAATTCGTGCTGCTTTAGCAAAACAGTTCTAAGATTCCCGTTTGCTCCCTTATGGTATTAGATGTTTAGTAGTGACCTTATTTTCCCCCCCTTTTTGCTAGTAGTAATCTTTCACAACTTCCTGACGCGAATCCGTTATATTGTAGTGCCTTACATATTTTGTTTCGGGGGAAGCGCGACTTTCTTTTTCTTTGTTATGTTTAATCGTTGCTTTTTGATAGGGAAAAGGTAGTGCACGGTGGTGACCACCTATCCTTTTTTCATTCGATGTTTTGATTTACCGTTCTATTGTGACCTGTCTGTGGTGCGGTTCTCCAACACTTTTGTCTGGTGTTTGGTGTTACTACGGCCGTACGTAATATAACTCACAGGCAAATAAAAAATGGAGTAAAATGTAAATGGCAATGCACGCTAATCATCGGTCTCATTCAATTCCGTCACTTAACCAAAGCGGAACGGAGTAAGGAAGTGGCGTTTAACGATGGGCATTGCTGTTGAGCAATGGAAATGAATTAACGTTTACACCACTGCGCCACGTGCTGTTAA ] [+] EMBL BM638646 [ ccgTCAAAAATAGAACGTTTCGCAATTCGTGCTGCTTTAGCAGAACAGTTCTAAGATTCCCGTTTGCTCCCTTATGGTATTAGATGTTTAGTAGTGACCTTATTTCCCCCCCCTTTTTGCTAGTAGTAATCTTTCACAACTTCCTGACGCGAATCCGTTATATTGTAGTGCCTTACATATTTTGTTTCGGGGGAAGCGCGACTTTCT TTTGTTATGTTTAATCGTT C GATAGGAAAAAGGTAGTGCACGGTGGTGACCACCTATCCTTTTTTCATTCGATGTTTTGATTTACCGTTCTATTGTGACCTGTCTGTGGTGCGGTTCTCCAACACTTTTGTCTGGTGTTTGGTGTTACTACGGCCGTACGTAATATAACTAACAGGCAGAT AAAAATGGAGTAAAATGTAAATGGCAATGCACGATAATCATCGGTCTCATTCAATTCCGTCACTTAACCAAAGCGGAACGGAGTAAGGAAGTGGCGTTTAACGATGGGCATTGCTGTTGAGCAATGGAAATGAATTAACGTTTACACCACTGCGCCACGTGCTGTTAACACGTTTACGTTAACAGTTTTTTTTTCTTCTTTTTTTTCTACTAACTTTATGTGATCATGATTGGGAGGGTCGCGCCTTTTCTTTCTGCTATTAATGCAACACGT ] [+] EMBL BX623979 [ GGTGTTACTACGGCCGTACGTAATATAACTAACAGGCAGATAAAAAATGGAGTAAAATGTAAATGGCAATGCACGATAATCATCGGTCTCATTCAATTCCGTCACTTAACCAAAGCGGAACGGAGTAAGGAAGTGGCGTTTAACGATGGGCATTGCTGTTGAGCAATGGAAATGAATTAACGTTTACACCACTGCGCCACGTGCTGTTAACACGTTTACGTTAACAG TTTTTTTTCTTCTTTTTTTTCTACTAACTTTATGTGATCATGATTGGGAGGGTCGCGCCTTTTCTTTCTGCTATTAATGCAACACGTTTGAGTTGAATGTTAGCTCCCGAGCGCATTAAAGATTGATTCATTAGTTTAGGCAAAGCAGACAGAAAAACAAATCCATCAATAAATAAAGCGGTAGGGCTCGCGGCATTGCTGTTTCTCCGCAATTCACAGCAATTTATATGATGCAGTCGATGCAGTTAGGCGATGAGTCCATGAGTGTAGGAAAGTGACTGTTTAAGTATGTTTAAATTAAAAAAAAAACAACAACTATTTGAGCTAATAGTGTGCAAAATTGGGACGCCGCGGCACGGAATGACGGGTGCGGATGAGATAAAAGCCACGCTGCACGAATCATTATCATGGAAAACTTTACTTATGATTTATATTTATCTTAGATTTACGATGACGTGACCGAGAGATAAAACCGAAAACACTATTACACGAA] [+] EMBL BX628043 [ ATGGAAATGAATTAACGTTTACACCACTGCGCCACGTGCTGTTAACACGTTTACGTTAACAGTTTTTTTTTCTTCTTTTTTTTCTACTAACTTTATGTGATCATGATTGGGAGGGTCGCGCCTTTTCTTTCTGCTATTAATGCAACACGTTTGAGTTGAATGTTAGCTCCCGAGCGCATTAAAGATTGATTCATTAGTTTAGGCAAAGCAGACAGAAAAACAAATCCATCAATAAATAAAGCGGTAGGGCTCGCGGCATTGCTGTTTCTCCGCAATTCACAGCAATTTATATGATGCAGTCGATGCAGTTAGGCGATGAGTCCATGAGTGTAGGAAAGTGACTGTTTAAGTATGTTTAAATTAAAAAAAAAACAACAACTATTTGAGCTAATAGTGTGCAAAATTGGGACGCCGCGGCACGGAATGACGGGTGCGGATGAGATAAAAGCCACGCTGCACGAATCATTATCATGGAAAACTTTACTTATGATTTATATTTATCTTAGATTTACGATGACGTGACCGAGAGATAAAACCGAAAACACTATTA ] [+] EMBL AGA281600 [ tTTTTTTTTTTTCTACTAACTTTATGTGATCATGATTGGGAGGGTCGCGCCTTTTCTTTCTGCTATTAATGCAACACGTTTGAGTTGAATGTTAGCTCCCGAGCGCATTAAAGATTGATTCATTAGTTTAGGCAAAGCAGACAGAAAAACAAATCCATCAATAAATAAAGCGGCAGGGCTCGCGGCATTGCTGTTTCTCCGCAATTCACAGCAATTTATATGATGCAGTCGATGCAGTTAGGCGATGAGTCCATGAGTGTAGGAAAGTGACTGTTTAAGTATGTTTAAATTAAAAAAAAAACAACAACTATTTGAGCTAATAGTGTGCAAAATTGGGACGCCGCGGCACGGAATGACGGGTGCGGATGAGATAAAAGCCACGCTGCACGAATCATTATCATGGAAAACTTTACTTATGATTTATATTTATCTTAGATTTACGAT ] [-] EMBL AGA283192 [ TTATNATTTATATTTATWTTAGATTTACGATGACGTGACCGAGAGATAAAAaaaaaa ] consensusID : consensus_8232#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 643 fasta sequence [ATCGTTGCTTTTCGATAGGGAAAAGGTAGTGCACGGTGGTGACCACCTATCCTTTTTTCATTCGATGTTTTGATTTACCGTTCTATTATGACCTGTCTGTGGTGCGGTTCTCCAACACTTTTGTCTGGTGTTTGGCGTTACTACGGCCGTACGTAATATAACTAACAGGCAGATAAAAAAGGAGTAAAATGTAGATGTCAATGCACGCTAATCATCGGTCTCATTCAATTCCGTCACTTAACCAAAGGCATTGGGCATTGCTGTTGAGCAATGGAAATGAATTAACGTTTACACCACTGCGCCACGTGCTGTTAACACGTTTACGTTAACAGTTTTTTTTCTTCTTTTTTTTCTACTAACTTTATGTGATCATGATTGGGAGGGTCGCGCCTTTCCTTTCTGCTATTAATGCAACACGTTTGAGTTGAATGTTTGCTCCCGAGCGCATAAAAGATTGATTCATTCGTTTAGGCAAAGCAGACAGAAATACAAATCCATCAGTAAATAGCGTTTTAAAGCGGTAGGGCTCGCGGCATTGCTGTTTCTCCGCAATTCACAGCAATTTATATGATGCAGTCGATGCAGTTAGGCGATGAGTCCATGAGTGTAGTAGAGTGACTGTTTAAGTATGTTTAAAAAAAAA] [-] EMBL BX622335 [ATCGTTGCTTTTCGATAGGGAAAAGGTAGTGCACGGTGGTGACCACCTATCCTTTTTTCATTCGATGTTTTGATTTACCGTTCTATTATGACCTGTCTGTGGTGCGGTTCTCCAACACTTTTGTCTGGTGTTTGGCGTTACTACGGCCGTACGTAATATAACTAACAGGCAGATAAAAAAGGAGTAAAATGTAGATGTCAATGCACGCTAATCATCGGTCTCATTCAATTCCGTCACTTAACCAAAGGCATTGGGCATTGCTGTTGAGCAATGGAAATGAATTAACGTTTACACCACTGCGCCACGTGCTGTTAACACGTTTACGTTAACAGTTTTTTTTCTTCTTTTTTTTCTACTAACTTTATGTGATCATGATTGGGAGGGTCGCGCCTTTCCTTTCTGCTATTAATGCAACACGTTTGAGTTGAATGTTTGCTCCCGAGCGCATAAAAGATTGATTCATTCGTTTAGGCAAAGCAGACAGAAATACAAATCCATCAGTAAATAGCGTTTTAAAGCGGTAGGGCTCGCGGCATTGCTGTTTCTCCGCAATTCACAGCAATTTATATGATGCAGTCGATGCAGTTAGGCGATGAGTCCATGAGTGTAGTAGAGTGACTGTTTAAGTATGTTTAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8232#0 AATTNCAGAGCCAGTTTATGAGCANCTCGATCGTGCGGGACGCGGCCGCCGGTGCCGCCC 60 consensus_8232#1 ------------------------------------------------------------ consensus_8232#0 GTGCCTCCGTCTCGAGCACCCTGAACAGGTACTAGAGGAGTGGCGCATTAGATATGCGTA 120 consensus_8232#1 ------------------------------------------------------------ consensus_8232#0 CGCCAATTTCCTCTTCCTCCTCCTCACTACTTTCATTGCTACTTCTACTTCTGAATTGCC 180 consensus_8232#1 ------------------------------------------------------------ consensus_8232#0 AACACACCCCCCCCCCCCCCTCACACACACACAAACGCAATACGAACTGTTACGTTATTA 240 consensus_8232#1 ------------------------------------------------------------ consensus_8232#0 TTACTATTACTACTTACATCCCTATTACTCCCCTACAAAACAACTCGACATCAAGATCTA 300 consensus_8232#1 ------------------------------------------------------------ consensus_8232#0 CCGTGTTTAATTATCAGCACTACCACCTTCCTTTACCTCTTTTGCGAAACTCGTATGCTT 360 consensus_8232#1 ------------------------------------------------------------ consensus_8232#0 CGAATGCTTCCATCCCGAAGCTTGTGTTGGGACATTACTTTCCATTATTATTCCCTGTTT 420 consensus_8232#1 ------------------------------------------------------------ consensus_8232#0 CCCTTTTGCCGATGGACAGGCGGTGCGGCATAGATCTATGATGTCTCTATGATGTCCCCA 480 consensus_8232#1 ------------------------------------------------------------ consensus_8232#0 AGCATACGAAAAAGTAAAAAAATCGATCAAAAATAGAACGTTTCGCAATTCGTGCTGCTT 540 consensus_8232#1 ------------------------------------------------------------ consensus_8232#0 TAGCAGAACAGTTCTAAGATTCCCGTTTGCTCCCTTATGGTATTAGATGTTTAGTAGTGA 600 consensus_8232#1 ------------------------------------------------------------ consensus_8232#0 CCTTATTTCCCCCCCCTTTTTGCTAGTAGTAATCTTTCACAACTTCCTGACGCGAATCCG 660 consensus_8232#1 ------------------------------------------------------------ consensus_8232#0 TTATATTGTAGTGCCTTACATATTTTGTTTCGGGGGAAGCGCGACTTTCTTTTTCTTTGT 720 consensus_8232#1 ------------------------------------------------------------ consensus_8232#0 TATGTTTAATCGTTGCTTTTTGATAGGGAAAAGGTAGTGCACGGTGGTGACCACCTATCC 780 consensus_8232#1 --------ATCGTTGCTTTTCGATAGGGAAAAGGTAGTGCACGGTGGTGACCACCTATCC 52 ************ *************************************** consensus_8232#0 TTTTTTCATTCGATGTTTTGATTTACCGTTCTATTGTGACCTGTCTGTGGTGCGGTTCTC 840 consensus_8232#1 TTTTTTCATTCGATGTTTTGATTTACCGTTCTATTATGACCTGTCTGTGGTGCGGTTCTC 112 *********************************** ************************ consensus_8232#0 CAACACTTTTGTCTGGTGTTTGGTGTTACTACGGCCGTACGTAATATAACTAACAGGCAG 900 consensus_8232#1 CAACACTTTTGTCTGGTGTTTGGCGTTACTACGGCCGTACGTAATATAACTAACAGGCAG 172 *********************** ************************************ consensus_8232#0 ATAAAAAATGGAGTAAAATGTAAATGGCAATGCACGATAATCATCGGTCTCATTCAATTC 960 consensus_8232#1 ATAAAAAA-GGAGTAAAATGTAGATGTCAATGCACGCTAATCATCGGTCTCATTCAATTC 231 ******** ************* *** ********* *********************** consensus_8232#0 CGTCACTTAACCAAAGCGGAACGGAGTAAGGAAGTGGCGTTTAACGATGGGCATTGCTGT 1020 consensus_8232#1 CGTCACTTAACCAAAG---------------------------GCATTGGGCATTGCTGT 264 **************** * ************* consensus_8232#0 TGAGCAATGGAAATGAATTAACGTTTACACCACTGCGCCACGTGCTGTTAACACGTTTAC 1080 consensus_8232#1 TGAGCAATGGAAATGAATTAACGTTTACACCACTGCGCCACGTGCTGTTAACACGTTTAC 324 ************************************************************ consensus_8232#0 GTTAACAGTTTTTTTTTCTTCTTTTTTTTCTACTAACTTTATGTGATCATGATTGGGAGG 1140 consensus_8232#1 GTTAACAGTTTTTTTT-CTTCTTTTTTTTCTACTAACTTTATGTGATCATGATTGGGAGG 383 **************** ******************************************* consensus_8232#0 GTCGCGCCTTTTCTTTCTGCTATTAATGCAACACGTTTGAGTTGAATGTTAGCTCCCGAG 1200 consensus_8232#1 GTCGCGCCTTTCCTTTCTGCTATTAATGCAACACGTTTGAGTTGAATGTTTGCTCCCGAG 443 *********** ************************************** ********* consensus_8232#0 CGCATTAAAGATTGATTCATTAGTTTAGGCAAAGCAGACAGAAAAACAAATCCATCAATA 1260 consensus_8232#1 CGCATAAAAGATTGATTCATTCGTTTAGGCAAAGCAGACAGAAATACAAATCCATCAGTA 503 ***** *************** ********************** ************ ** consensus_8232#0 AATA--------AAGCGGTAGGGCTCGCGGCATTGCTGTTTCTCCGCAATTCACAGCAAT 1312 consensus_8232#1 AATAGCGTTTTAAAGCGGTAGGGCTCGCGGCATTGCTGTTTCTCCGCAATTCACAGCAAT 563 **** ************************************************ consensus_8232#0 TTATATGATGCAGTCGATGCAGTTAGGCGATGAGTCCATGAGTGTAGGAAAGTGACTGTT 1372 consensus_8232#1 TTATATGATGCAGTCGATGCAGTTAGGCGATGAGTCCATGAGTGTAGTAGAGTGACTGTT 623 *********************************************** * ********** consensus_8232#0 TAAGTATGTTTAAATTAAAAAAAAAACAACAACTATTTGAGCTAATAGTGTGCAAAATTG 1432 consensus_8232#1 TAAGTATGTTTAAAAAAAAA---------------------------------------- 643 ************** **** consensus_8232#0 GGACGCCGCGGCACGGAATGACGGGTGCGGATGAGATAAAAGCCACGCTGCACGAATCAT 1492 consensus_8232#1 ------------------------------------------------------------ consensus_8232#0 TATCATGGAAAACTTTACTTATGATTTATATTTATCTTAGATTTACGATGACGTGACCGA 1552 consensus_8232#1 ------------------------------------------------------------ consensus_8232#0 GAGATAAAACCGAAAACACTATTACACGAA 1582 consensus_8232#1 ------------------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||