These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8234#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1030 fasta sequence [TCAGCAGAATCGCCAGACGGTTAAATTAAGTTTCTTGCTGTGAACCAATTGCATGAAGCTTGCAAATGGATGCCAGCTATCGACGGGNACACGTTTGATACGACATGGACGCTTAGAAGTGCGTATTGGCATTAAGCAAGATAGCAACCCAGGAATGGTTTCAATCGTCACGCCTGATACAAAAGAGCTCACCCTTCAGCTGCAAACCATACAGGCGGAGGGTGCGGTCGGTGTAAAGAAACCAAAGTTCGGATACGAATTCGGGTCGGCCATTGTGGATGTGCTGAAGNGGCCAAATCGCATCCTG-CTCGAGCTACTAGAGTACGAACCGGACAGCACAGTGGACGCTGCTTACCGCAGCCCTGCTAATGAACACGCNATCGATCGTCGTAGCTATCACGAAACAATACGCCAACATCTGACGAAGCTGGAAACGGTCGACGCGCTTCGGAACAGGATATTATCTTGATCTTGCTAGCCAAATGGGCGATCGACAAATCGGCTAGAACAGTGGATCGCAANCTGGTCAATTGCACGTGACGGGAATCGATCTTTCCGGACTTCAATTGAGCGTTGTACACTACACTCCCTAACTCGCCACGGCAAATGCTATTACTCTGCAGTGAACACTCGGCTCGTAACATCGAAATTTCGCGAGTGTTGGTGATTTGGTGTTCTGCCCGNACANGCGTTAACTNTTTGGACCGNAAACTCAATAGGCGGGGAGAGGACGCCTCGGGAATACAGGAAGGGGTGGCTTGGACAATANCCCCGGTTGGGTTGGGACACGCAACATAATTCTNACACATTGNGGTAACCCGGCGGGCACACCAGGACAATTAAGCANAAAGAACGCTGGCCTCAACCCAAAGTTTGAGAAGCAATNGGNTCTAAAGAACCATCACCTTTTCTTGGTTCAACAAACCAACATCGGTTACTNTCANGGNAATCGAGCCCACATAANNTTTCGAGATCACTCCGCACAAGAAACACACACAACATCGTGGCCGCGATACTCTAGAAGGGACAA] [+] EMBL AL929786 [TCAGCAGAATCGCCAGACGGTTAAATTAAGTTTCTTGCTGTGAACCAATTGCATGAAGCTTGCAAATGGATGCCAGCTATCGACGGGNACACGTTTGATACGACATGGACGCTTAGAAGTGCGTATTGGCATTAAGCAAGATAGCAACCCAGGAATGGTTTCAATCGTCACGCCTGATACAAAAGAGCTCACCCTTCAGCTGCAAACCATACAGGCGGAGGGTGCGGTCGGTGTAAAGAAACCAAAGTTCGGATACGAATTCGGGTCGGCCATTGTGGATGTGCTGAAGNGGCCAAATCGCATCCTG CTCGAGCTACTAGAGTACGAACCGGACAGCACAGTGGACGCTGCTTACCGCAGCCCTGCTAATGAACACGCNATCGATCGTCGTAGCTATCACGAAACAATACGCCAACATCTGACGAAGCTGGAAACGGTCGACGCGCTTCGGAACAGGATATTATCTTGATCTTGCTAGCCAAATGGGCGATCGACAAATCGGCTAGAACAGTGGATCGCAANCTGGTCAATTGCACGTGACGGGAATCGATCTTTCCGGACTTCAATTGAGCGTTGTACACTACACTCCCTAACTCGCCACGGCAAATGCTATTACTCTGCAGTGAACACTCGGCTCGTAACATCGAAATTTCGCGAGTGTTGGTGATTTGGTGTTCTGCCCGNACANGCGTTAACTNTTTGGACCGNAAACTCAATAGGCGGGGAGAGGACGCCTCGGGAATACAGGAAGGGGTGGCTTGGACAATANCCCCGGTTGGGTTGGGACACGCAACATAATTCTNACACATTGNGGTAACCCGGCGGGCACACCAGGACAATTAAGCANAAAGAACGCTGGCCTCAACCCAAAGTTTGAGAAGCAATNGGNTCTAAAGAACCATCACCTTTTCTTGGTTCAACAAACCAACATCGGTTACTNTCANGGNAATCGAGCCCACATAANNTTTCGAGATCACTCCGCACAAGAAACACACACAACATCGTGGCCGCGATACTCTAGAAGGGACAA] [-] EMBL AGA281415 [ TTTGATACGACATGGACGCTTAGAAGTGCGT TTGGCATTAAGCAAGATAGCAACCCAGGAATGGTTTCAATCGTCACGCCTGATACAAAAGAGCTCACCCTTCAGCTGCAAACCATACAGGCGGAGGGTGCGGTCGGTGTAAAGAAACCAAAGTTCGGATACGAATTCGGGTCGGCCATTGTGGATGTGCTGAAG GCCCAACTCGCATCCTGCCTCGAGCTACTAGAGTACGAACCGGACAGCA AGTGGACGCTGCTTACCGCAGCCCTGCTAATGAA A GCAATCGATCGTCGTAGCTATCACGAAACAATACGCCAACATCTGACGAAGCTGGAAACGGTCGACGCGCTTCGGAA AGGATATTATCTTGATCTTGCTAG CAAATGGGCGATCGA AAATCGGCTAGAACAGTGGATCG AAGCTGGTAAATTG A GTGA GGGAATCGATCTTTCCGGACTTCAATTGAGCGTTGTACACTACACTCCCTACCTCGCCACGGCAAATGCTATTAATCTG AGTGAA AATCGGCTCGTAA ATCGAA ] consensusID : consensus_8234#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1004 fasta sequence [CCAAGAATCGCGCACGAGTNGGTAAATAACAAATCACCAAAACAAACCCTCTGCTTTGCTCGCATCAACGAAAACGCCTTA-AAAATTGTCTCA--AAATGCATGGTCGTTTAAAAGTCCGCACGAGCGCTGAAGAGGCGGCTCGGAAGAAGCTGG-AACA-GCAACAAAAAGTGAAGATGTTCCGCGCAGCGATGGGACGTATTTTGGA--GAAGAAAACTGCGCAAGAATACG-ATGCCGAA-ATGATGGAGCTAACGGCG-AAACTGTTGAGCAGCAA-TCCGGATATAGCTACGTTGTGGAACCTGCGTCGCTTGTGCATACTGGCGA-GGCCAGAGGGTGAGGACAGCTCCGC-GGTGTTCGA-TAAGGA-TCTTGGATTTACGGAAA--TGTGCCTGATGGTGAATCCAAAATCGTACTGCGCCTGGCACCATCGTT-GCTGGATACTGGAGAATGCACCAAAGGCGGACTGGCAGAAGGAGGTTGACCTATGCACCAAGTACCTCAAGCTGGATGAGCGTAACTTCCACTGCTGGGACTATCGACGTTATGTGGTGGAAAAGGCAGGCGTGACTCC-GGAGAAAGAGTTCGCCTTCTGTACGGAGAAGATTGAGAAAAACTTCTCCAACTACTCGTCGTGGCATTACCGCAGCAAGCTGCTACCGCTGCTCTACCCG-AACGTGGAAGATCCATCGCGTCCAATCAGCGAAGAAAAACTGAAAGAAGAGCTGGAACTCGTGCTTACGGCGGCATTTACTGATCCGAACGATAGCAGCGNGTGGTTTTACCAGCGCTGGCTGCTAGGCTATGCACAGCCAGAGCTCGATCTGGCCGCTTGCCGTATCGATGCCAAGCAAAACCTGGCCGTACTGTCCTTCAGCAAACCGATAAATCTGTCAACGGGTGGATACAAGCTTACAGTTTCTTGCTGTGATAATTGCAACGAAGCAAGCAAATGGATGCCAGCTATCGACGGGAACACGTTTGATACGACATGGACGCTTAGAAGTGCGTTT] [+] EMBL BX469215 [CCAAGAATCGCGCACGAGTNGGTAAATAACAAATCACCAAAACAAACCCTCTGCTTTGCTCGCATCTACGAAAACGCTTTANTAAATTGTCTCAGTAAGTGCATGGTCGTTTAAAAGTCCGCACGAGCGCTGAAGAGGCGGCTCGGAAGAAGCTGGTAACAGGCAACAAAAAGTGAAGATGTTCCGCGCAGCGAT GGACGTATTTTGGACGGAAGAAAACTGCGCAAGAATACGCATGCCGAACATGATGGAGCTAACGGCGAAAACTGTTGAGCAGCAAGTCCGGATATAGCTACGTTGTGGAACCTGCGTCGCTTGTGCATACTGGCGACGGCCAGAGGGTGAGGACAGTTCCGCGGGTGTTCGAGTAAGGAGTCTTGGATTCACGGAAAAGTGTGCCTGATGGTGAATCCAAAATCGTACTGTGCCTGGCACCATCGTTGGCTGGATACTGGAGAATGCAgc ] [+] EMBL BM609691 [ ccgCCAAAACAAACCCTCTGCTTTGCTCGCATCAACGAAAACGCCTTA AAAATTGTCTCA AAATGCATGGTCGTTTAAAAGTCCGCGCGAGCGCTGAAGAGGCGGCTCGGAAGAAGCTGG AACA ACAACAAAAAGTGAAGATGTTCCGCGCAGCGATGGGACGTATTTTGGA GAAGAAAACTGCGCAAGAACACG ATGCCGAA ATGATGGAGCTAACGGCG AAACTGTTGAGCAGCAA TCCGGATATAGCTACGTTGTGGAACCTGCGTCGCTTGTGCATACTGGCGA GGCCAGAGGGTGAGGACAGCTCCGC GGTGTTCGA TAAGGA TCTTGGATTTACGGAAA TGTGCCTGATGGTGAATCCAAAATCGTACTGCGCCTGGCACCATCGTT GCTGGATACTGGAGAATGCACCAAAGGCGGACTGGCAGAAGGAGGTTGACCTATGCACCAAGTACCTCAAGCTGGATGAGCGTAACTTCCACTGCTGGGACTATCGACGTTATGTGGTGGAAAAGGCAGGCGTGACTCCGGGAGAAAGAGTTCGCCTTCTGTACGGAGAAGATTGAGAAAAACTTCTCCAACTACTCGTCGTGGCATTACCGCAGCAAGCTGCTACCGCTGCTCTACCCGAAACGTGGAAGATCCATCGCGTCCAATCAGCGAAG AGAACTGA ] [+] EMBL BM615545 [ ccgCTCTGCTTTGCTCGCATCAACGAAAACGCCTTA AAAATTGTCTCA AAATGCATGGTCGTTTAAAAGTCCGCACGAGCGCTGAAGAGGCGGCTCGGAAGAAGCTGG AACA ACAACAAAAAGTGAAGATGTTCCGCGCAGCGATGGGACGTATTTTGGA GAAGAAAACTGCGCAAGAACACG ATGCCGAA ATGATGGAGCTAACGGCG AAACTGTTGAGCAGCAA TCCGGATATAGCTACGTTGTGGAACCTGCGTCGCTTGTGCATACTGGCGA GGCCAGAGGGTGAGGACAGCTCCGC GGTGTTCGA TAAGGA TCTTGGATTTACGGAAA TGTGCCTGATGGTGAATCCAAAATCGTACTGCGCCTGGCACCATCGTT GCTGGATACTGGAGAATGCACCAAAGGCGGACTGGCAGAAGGAGGTTGACCTATGCACCAAGTACCTCAAGCTGGATGAGCGTAACTTCCACTGCTGGGACTATCGACGTTATGTGGTGGAAAAGGCAGGCGTGACTCC GGAGAAAGAGTTCGCCTTCTGTACGGAGAAGATTGAGAAAAACTTCTCCAACTACTCGTCGTGGCATTACCGCAGCAAGCTGCTACCGCTGCTCTACCCG AACGTGGAAGATCCATCGCGTCCAATCAGCGAAGAAAAACTGAAAGAAG ] [+] EMBL BM577960 [ ccgGCATCTACGAAAACGCCTTA GAAATTGTCTCA AAATGCATGGTCGTTTAAAAGTCCGCACGAGCGCTGAAGAGGCGGCTCGGAAGAAGCTGG AACA GCAACAAAAAGTGAAGATGTTCCGCGCAGCGATGGGACGTATTTTGGA GAAGAAAACTGCGCAAGAATACG ATACCGAA ATGATGGAGCTAACGGCG AAACTGTTGAGCAGCAA TCCGGATATAGCTACGTTGTGGAACCTGCGTCGCTTGTGCATACTGGCGA GGCCAGAGGGTGAGGACAGCTCCGC GGTGTTCGA TAAGGA TCTTGGATTTACGGAAA TGTGCCTGATGGTGAATCCAAAATCGTACTGCGCCTGGCACCATCGTT GCTGGATACTGGAGAATGCACCAAAGGCGGACTGGCAGAAGGAGGTTGACCTATGCACCAAGTACCTTAAGTTGGATGAGCGTAACTTCCACTGCTGGGACTATCGACGTTATGTGGTGGAAAAGGCAGGCGTGACTCC GGAGAAAGAGTTCGCCTTCTGTACGGAGAAGATTGAGAAAAACTTCTCCAACTACTCGTCGTGGCATTACCGCAGCAAGCTGCTACCGCTGCTCTACCCG AACGTGGAAGATCCATCGCGTCCAATCAGCGAAGAAAAACTGAAAGAAGAGCTGGAACTCGTGCTTACGGCGGCATTTACTGATCCGAACGAT ] [+] EMBL BM583450 [ ccgGCATCAACGAAAACGCCTTA AAAATTGTCTCA AAATGCATGGTCGTTTAAAAGTCCGCACGAGCGCTGAAGAGGCGGCTCGGAAGAAGCTGG AACA ACAACAAAAAGTGAAGATGTTCCGCGCAGCGATGGGACGTATTTTGGA GAAGAAAACTGCGCAAGAACACG ATGCCGAA ATGATGGAGCTAACGGCG AAACTGTTGAGCAGCAA TCCGGATATAGCTACGTTGTGGAACCTGCGTCGCTTGTGCATACTGGCGA GGCCAGAGGGTGAGGACAGCTCCGC GGTGTTCGA TAAGGA TCTTGGATTTACGGAAA TGTGCCTGATGGTGAATCCAAAATCGTACTGCGCCTGGCACCATCGTT GCTGGATACTGGAGAATGCACCAAAGGCGGACTGGCAGAAGGAGGTTGACCTATGCACCAAGTACCTCAAGCTGGATGAGCGTAACTTCCACTGCTGGGACTATCGACGTTATGTGGTGGAAAAGGCAGGCGTGACTCC GGAGAAAGAGTTCGCCTTCTGTACGGAGAAGATTGAGAAAAACTTCTCCAACTACTCGTCGTG ] [+] EMBL AL694723 [ cgaggtAAAACG CTTT AAAATTGTCTCA TAATGCATGGTCGTTTAAAAGTCCGCACGAGCGCTGAAGAGGCGGCTCGGAAGAAGCTGG AACA GCAACAAAAAGTGAAGATGTTCCGCGCAGCGATGGGACGTATTTTGGA GAAGAAAACTGCGCAAGAATACG ATGCCGAA ATGATGGAGCTAACGGCA AAACTGTTGAGCAGCAA TCCGGATATAGCTACGTTGTGGAACCTGCGTCGCTTGTGCATACTGGCGA GGCCAGAGGGTGAGGACAGTTCCGC GGTGTTCGA TAAGGA TCTTGGATTCACGGAAA T ] [+] EMBL AGA283028 [ AAGATCCATCACGTCCAATCAGCGAAGAAAAACTGAAAGAAGAGCTGGAACTCGTGCTTACGGCAGCATTTACTGATCCGAACGATAGCAGCGNGTGGTTTTACCAGCGCTGGCTGCTAGGCTATGCACAGCCAGAGCTCGATCTGGCCGCTTGCCGTATCGATGCCAAGCAAAACCTGGCCGTACTGTCCTTCAGCAAACCGATAAATCTGTCAACGGGTGGATACAAGCTTACAGTTTCTTGCTGTGATAATTGCAACGAAGCAAGCAAATGGATGCCAGCTATCGACGGGAACACGTTTGATACGACATGGACGCTTAGAAGTGCGTTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8234#0 TCAGCAGAATCGC---CAGACGGTTAAATTA-AGTTTCTTGCTGTGAACCAATTGCATGA 56 consensus_8234#1 CCA--AGAATCGCGCACGAGTNGGTAAATAACAAATCACCAAAACAAACCCTCTGCTTTG 58 ** ******** * * ***** * * * **** *** * consensus_8234#0 AGCTTGCAAATGGATGCCAGCTATCGACGGGNACACGTTTGATACGACATGGACGCTTAG 116 consensus_8234#1 CTCGCATCAACGAAAACGCCTTA-------AAAATTGTCTCAAAATGCATGGTCGTTTAA 111 * ** * * * ** * ** * * * ***** ** *** consensus_8234#0 AAGTGCGTATTGGCATTAAGCAAGATAGCAACCCAGGAATGGTTTCAATCGTCACGCCTG 176 consensus_8234#1 AAGTCCGCACGAGCGCTGAAGAGG----CGGCTCGGAAGAAGCTGGAACAGCAACA--AA 165 **** ** * ** * * * * * * * * * * * ** * ** consensus_8234#0 ATACAAAAGAGCTCACCCTTCAGCTGCAAACCATACAGGCGGAGGGTGCGGTCGGTGTAA 236 consensus_8234#1 AAGTGAAGATGTTCCGCGCAGCGATGGGACGTATTTTGGAGAAGAAAACTGCGCAAGAAT 225 * ** * ** * * ** * ** ** * ** * * * * consensus_8234#0 A-GAAACCAAAGTTCGGATACGAATTCGGGTCGGCCATTGTGGAT--GTGCTGAAGNGGC 293 consensus_8234#1 ACGATGCCGAAATGATGGAGCTAA--CGGCGAAACTGTTGAGCAGCAATCCGGATATAGC 283 * ** ** ** * * * ** *** * *** * * * * ** ** consensus_8234#0 CAAATCGC--ATCCTGCTCGAGCTACTAGAGTACGAACCGGACAGCACAGTGGACGCTGC 351 consensus_8234#1 TACGTTGTGGAACCTGCGTCGCTTGT--GCATACTGGCGAGGCCAGAGGGTGAGGACAGC 341 * * * * ***** * * *** * * * * *** * ** consensus_8234#0 TTACCGCAGCCCTGCTAATGAACACGCNATCGATCGTCGTAGCTATCACGAAACAATACG 411 consensus_8234#1 T--CCGCGGTGTT--CGATAAGGAT--CTTGGATTTACGGAAATGTGCCTGATGGTGAAT 395 * **** * * ** * * * *** ** * * * * * * consensus_8234#0 CCAACATCTGACGAAGCTGGAAACGGTCGACGCGCTTCGGAACAGGATATTATCTTGATC 471 consensus_8234#1 CCAAAATCGTACTGCGCCTGGCACCATCGTTGCTGGATACTGGAGAATGC-ACCAAAGGC 454 **** *** ** ** * ** *** ** ** ** * * * consensus_8234#0 TTGCTAGCCAAATGGGCGATCGACAAAT-CGGCTAGAACAGTGGATCGCAANCTGGTCAA 530 consensus_8234#1 GGACTGGCAGAA--GGAGGTTGACCTATGCACCAAGTACCTCAAGCTGGATGAGCGTAAC 512 ** ** ** ** * * *** ** * * ** ** * * ** * consensus_8234#0 TTGCACGTGACGGGA--ATCGATCTTTCCGGACTTCAATTGAGCGTTGTACACTACACTC 588 consensus_8234#1 TTCCAC-TGCTGGGACTATCGA-CGTTATGTGGTGGAAAAGGCAGGCGTGACTCCGGAGA 570 ** *** ** **** ***** * ** * * ** * * ** consensus_8234#0 CCTAACTCGCCACGGCAAATGCTATTACTCTGCAGTGAACACTCGGCT-CGTAACATCGA 647 consensus_8234#1 AAGAGTTCGCCTTCTGTACGGAGAAGATTGAGAAAAACTTCTCCAACTACTCGTCGTGGC 630 * ***** * * * * * * * * ** * * * * consensus_8234#0 AATTTCGCGAGTGTTGGTGATTTGGTGTTCTGCCCGNACANGCGTTAACTNTTTGGACCG 707 consensus_8234#1 ATTACCGCAGCAAGCTGCTACC-GCTGCTCTACCCGAACGTGGAAGATCCAT-------- 681 * * *** * * * ** *** **** ** * * * * consensus_8234#0 NAAACTCAATAGGCGGGGAGAGGACGCCTCGGGAATACAGGAAGGGGTGGCTTGGACAAT 767 consensus_8234#1 CGCGTCCAATCAGCGAAGAAAAACTGAA--AGAAGAGCTGGAACTCGTGCTTACGGCGGC 739 **** *** ** * * * * * **** *** * * * consensus_8234#0 ANCCCCGGTTGGGTTGGGACACGCAACATAATTCTNACACATTGNGGTAACCCGGCGGGC 827 consensus_8234#1 ATTTACTGATCCGAACGATAGCAGCGNGTGGTTTTACCAGCGCTGGCTGCTAGGCTATGC 799 * * * * * * * * ** * ** * * * ** consensus_8234#0 ACA-CCAGGAC---AATTAAGCANAAAGAACGCTGGCCTCAACCCAAAGTTTGAGAAGCA 883 consensus_8234#1 ACAGCCAGAGCTCGATCTGGCCGCTTGCCGTATCGATGCCAAGCAAAACCT--GGCCGTA 857 *** **** * * * * * *** * *** * * * * consensus_8234#0 ATNGGNTCTAAAGAACCATCA--CCTTTTCTTGGTTCAACAAACCAACATCGGTTACTNT 941 consensus_8234#1 CTGTCCTTCAGCAAACCGATAAATCTGTCAACGGGTGGATACAAGCTTACAGTTTCTTGC 917 * * * **** * ** * ** * * * * * * ** * consensus_8234#0 CANGGNAATCGAGCCCACATAANNTT-TCGAGATCACTCCGCACAAGAAACACACACAAC 1000 consensus_8234#1 TGTGATAATTGCAACGAAGCAAGCAAATGGATGCCAGCTATCGACGGGAACACGTTTGAT 977 * *** * * * ** * ** ** * * ***** * consensus_8234#0 ATCGTGGCCGCGATACTCTAGAAGGGACAA- 1030 consensus_8234#1 AC---GACATGGACGCT-TAGAAGTGCGTTT 1004 * * * ** ** ****** * |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||