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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8251#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1244 fasta sequence
[TATAGAGAAATGATTTATATAATTATGCATACGCGTAAAGTAGGAAGTAATAGGGCAAAATAATACGGTTTAAGGAAACGGTTTACTTGTTACTTTTTCCCTGAGTGCGTGTGAGCGCCCGCCCCGCACGATGTGCAAACGCGAACGTTCCCTGGACCGTTGTGTTTAATTTGAGATTCTGTAAGAATTACAAAATATGCGCGGGCCAAAAGCAACACCCCGAGATAGAGCAAAAACGGGAGAAATGGAGAAAACAATATGAAC-AAAAAAAATTACAAAGGAAACTTGGGCATGGGCATGCAAAATCGTGTATTATTGGAGCTCGCTTTGTAGGATTATAGTTTTTGCTGTTGTATTTACCTTTATTCCTAATTTCTGTTACCTTATATACGTGTTTCTGGGGTAAGGAACGGTATGAGCTAGAGACGGAATGGATCACAAACACCCCCCCGGCGGGAAACAAGTCTTATTTACAATACACTCTAGCTGCAATTACGCACTGCTGCTGCACATCTGAAATTATGTTTTGTTCTGCAAAGGCAAGCAAGGCTTAGCGCGTATAATAATTTAAGAACTTTAAAAGCGATTCGCGTCGCAGCAGCAACACCCATGCAAGGCAAATATGTCACTAGCGCATTGCCTTTTGCATGGATTGTTGGTTGGAACACTCATTAAATCACACCAAGCCAAGCAAAACAAAACAAACATCACCCTCATATTACTCGTACCGCTAGCGGGGCGGTTAATTTTCCTTTGCTTTCTTCCTGTTTGTTTGTTTAAACATCGAGCAAACACACGAATCCATCAGATGGCACTCCCATTCAGCAGAGATCGCGTAGCGTCCACGCTACAGACTTGCATCCGCGATATTATATGCAAAACACAGCGCTGCCGGGAGAGTGTACAGTGTTGTTGGTATCATTTTCATTATGTTATGCTTCTACTCTCTAGCGTCCCTCAGAACCTTACTTGTAACAATTAATGGTGAGAAGAAGAAAAAAAACCCCAGAAAATTGCGAGATTATTAGAGCACGAAGGCAAAACACACACACACATATTCGCAAGCGACCAGAACATGGCAAACTACGTTTTGCACAGGGGCTGAACGCGTAGTGCCGATAGAATGGATACGAAAACGAAACAAATTAAAATAAACAAATTACCTTACTAGTAATGCGAACAAACAAGCAACCAAACAAAACAAAACGAAAACCTACAAAACAAATGTGTTCAATACCGCGGGC]
[+] EMBL BX626060 [TATAGAGAAATGATTTATATAATTATGCATACGCGTAAAGTAGGAAGTAATAGGGCAAAATAATACGGTTTAAGGAAACGGTTTACTTGTTACTTTTTCCCTGAGTGCGTGTGAGCGCCCGCCCCGCACGATGTGCAAACGCGAACGTTCCCTGGACCGTTGTGTTTAATTTGAGATTCTGTAAGAATTACAAAATATGCGCGGGCCAAAAGCAACACCCCGAGATAGAGCAAAAACGGGAGAAATGGAGAAAACAATATGAAC AAAAAAAATTACAAAGGAAACTTGGGCATGGGCATGCAAAATCGTGTATTATTGGAGCTCGCTTTGTAGGATTATAGTTTTTGCTGTTGTATTTACCTTTATTCCTAATTTCTGTTACCTTATATACGTGTTTCTGGGGTAAGGAACGGTATGAGCTAGAGACGGAATGGATCACAAACACCCCCCCGGCGGGAAACAAGTCTTATTTACAATACACTCTAGCTGCAATTACGCACTGCTGCTGCACATCTGAAATTATGTTTTGTTCTGCAAAGGCAAGCAAGGCTTAGCGCGTATAATAATTTAAGAACTTTAAAAGCGATTCGCGTCGCAGCAGCAACACCCATGCAAGGCAAATATGTCACTAGCGCATTGCCTTTTGCATGGATTGTTGGTTGGAACACTCATTAAATCACACCAA ]
[+] EMBL AGA282362 [ CCGCACGATGTGCAAACGCGAACGTTCCCTGGACCGTTGTGTTTAATTTGAGATTCTGTAAGAATTACAAAATATGCGCGGGCCAAAAGCAACACCCCGAGATAGAGCAAAAACGGGAGAAATGGAGAAAACAATATGAAC AAAAAAAATTACAAAGGAAACTTGGGCATGGGCATGCAAAATCGTGTATTATTGGAGCTCGCTTTGTAGGATTATAGTTTTTGCTGTTGTATTTACCTTTATTCCTAATTTCTGTTACCTTATATACGTGTTTCTGGGGTAAGGAACGGTATGAGCTAGAGACGGAATGGATCACAAACACCCCCCCGGCGGGAAACAAGTCTTATTTACAATACACTCTAGCTGCAATTACGCACTGCTGCTGCACATCTGAA ]
[+] EMBL BM633657 [ ccGGCCAAAAGCAACACCCCGAGATAGAGCAAAAACGGGTGAAATGGAGAAAACAATATGAACAAAAAAAAATTACAAAGGAAACTTGGGCATGGGCATGCAAAATCGTGTATTATTGGAGCTCGCTTTGTAGGATTATAGTTTTTGCTGTTGTATTTACCTTTATTCCTAATTTCTGTTACCTTATATACGTGTTTCTGGGGTAAGGAACGGTATGAGCTAGAGACGGAATGGATCACAAACACCCCCCCGGCGGGAAACAAGTCTTATTTACAATACACTCTAGCTGCAATTACGCACTGCTGCTGCACATCTGAAATTATGTTTTGTTCTGCA AAGGCTTAGCGCGTATAATAATTTAAGAACTTTAAAAGCGATTCGCGTCGCAGCAGCAACACCCATGCAAGGCAAATATGTCACTAGCGCATTGCCTTTTGCATGGATTGTTGGTTGGAACACTCATTAAATCACACCAAGCCAAGCAAAACAAAACAAACATCACCCTCATATTACTCGTACCGCTAGCGGGGCGGTTAATTTTCCTTTGCTTTCTTCCTGTTTGTTTGTTTAAACATCGAGCAAATACACGAATCCATCAGATGGCACTCCC ]
[-] EMBL AGA280739 [ GTTTCTGGGGTAAGGAACGGTATGAGCTAGAGACGGAATGAATCACAAACACCCCCCCGGCGGGAAACAAGTCTTATTTACAATACACTCTAGCTGCAATTACGCACTGCTGCTGCACATCTGAAATTATGTTTTGTTCTGCAAAGGCAAGCAAGGCTTAGCGCGTATAATAATTTAAGAACTTTAAAAGCGATTCGCGTCGCAGCAGCAACACCCATGCAAGGCAAATATGTCACTAGCGCATTGCCTTTTGCATGGATTGTTGGTTGGAACACTCAT ]
[+] EMBL BX607947 [ GTTGGAACACTCATTAAATCACACCAAGCCAAGCAAAACAAAACAAACATCACACTCATATTACTCGTACCGCTAGCGGGGCGGTTAATTTTCCTTTGCTTTCTTCCTGTTTGTTTGTTTAAACATCGAGCAAACACACGAATCCATCAGATGGCACTCCCATTCAGCAGAGATCGCGTAGCGTCCACGCTACAGACTTGCATCCGCGATATTATATGCAAAACACAGCGCTGCCGGGAGAGTGTACAGTGTTGTTGGTATCATTTTCATTATGTTATGCTTCTACTCTCTAGCGTCCCTCAGAACCTTACTTGTAACAATTAATGGTGAGAAGAAGAAAAAAAACCCCAGAAAATTGCGAGATTATTAGAGCACGAAGGCAAAACACACACACACATATTCGCAAGCGACCAGAACATGGCAAACTACGTTTTGCACAGGGGCTGAACGCGTAGTGCCGATA ]
[+] EMBL BX608367 [ GAGCAAACACACGAATCCATCAGATGGCACTCCCATTCAGCAGAGATCGCGTAGCGTCCACGCTACAGACTTGCATCCGCGATATTATATGCAAAACACAGCGCTGCCGGGAGAGTGTACAGTGTTGTTGGTATCATTTTCATTATGTTATGCTTCTACTCTCTAGCGTCCCTCAGAACCTTACTTGTAACAATTAATGGTGAGAAGAAGAAAAAAAACCCCAGAAAATTGCGAGATTATTAGAGCACGAAGGCAAAACACACACACACATATTCGCAAGCGACCAGAACATGGCAAACTACGTTTTGCACAGGGGCTGAACGCGTAGTGCCGATAGAATGGATACGAAAACGAAACAAATTAAAATAAACAAATTACCTTACTAGTAATGCGAACAAACAAGCAACCAAACAAAACAAAACGAAAACCTACAAAACAAATGTGTTCAATACCGCGGGC]
[+] EMBL BX608129 [ aaATTATATGCAAAACACAGCGCTGCCGGGAGAGTGTACAGTGTTGTTGGTATCATTTTCATTATGTTATGCTTCTACTCTCTAGCGTGCCTCAGAACCTTACTTGTAACAATTAATGG ]
consensusID : consensus_8251#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 537 fasta sequence
[CCCCACCTCCTTAGCTCAGCAGAATCGCCCCGACGGNTANATAGAGCAAAAACGGGAGAAATGGAGAAAACAATATGAACAAAAAAAATTACAAAGGAAACTTGGGCATGGGCATGCAAAATCGTGTATTATTGGAGCTCGCTTTGTAGGATTATAGATTTTTGCTGTTGTATTTACCTTTATTCCTAATTTCTGTTACCTTATATACGATGNTTCTGGAGGTAAGGAACGGTATGAGCTAGAGACGGGAATGGATCACAAAAACCCCCCGGGCGGGAAACAAGTCTTATTTACAATACACTCTANCTGCAATTACGCACTGCTGCTGCACATCTGAAACTTATGTCNAACGTTCTAGCAAAGGCAAGCAAGGCCTTAGCGCGTATCAATAATCNAAGAACTTTAAACAGCGATTCGCGTCGACAGACAGCAAANACCCATGCAAGGCAAATATGTCACTAGCGCATTGCCTTTTGCATGGATCGTAGGTTGGAACACTCATTAAAATCAAGCAAGCCAAGCAAAACAAAACAAACA]
[+] EMBL AL696587 [CCCCACCTCCTTAGCTCAGCAGAATCGCCCCGACGGNTANATAGAGCAAAAACGGGAGAAATGGAGAAAACAATATGAACAAAAAAAATTACAAAGGAAACTTGGGCATGGGCATGCAAAATCGTGTATTATTGGAGCTCGCTTTGTAGGATTATAGATTTTTGCTGTTGTATTTACCTTTATTCCTAATTTCTGTTACCTTATATACGATGNTTCTGGAGGTAAGGAACGGTATGAGCTAGAGACGGGAATGGATCACAAAAACCCCCCGGGCGGGAAACAAGTCTTATTTACAATACACTCTANCTGCAATTACGCACTGCTGCTGCACATCTGAAACTTATGTCNAACGTTCTAGCAAAGGCAAGCAAGGCCTTAGCGCGTATCAATAATCNAAGAACTTTAAACAGCGATTCGCGTCGACAGACAGCAAANACCCATGCAAGGCAAATATGTCACTAGCGCATTGCCTTTTGCATGGATCGTAGGTTGGAACACTCATTAAAATCAAGCAAGCCAAGCAAAACAAAACAAACA]
consensusID : consensus_8251#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 518 fasta sequence
[NCCCCCCCGGAGGTTTTTNAAAACTTCTAAACAGCCGATTCGCCGTCGCCAGCAGNACACCTATGCAGGCAAATATGTCACTAGCGCATTCCCTTTGCATGGATGTTCGGTTGGAACACTCATTAAATCACACCAAGCCAAGCAAAACAAAACAAACATCACACTACATATTACTCGTACCGCTAGACGGGGCGGTTAATTTTCCTTTGCTTTCTTCCTGTTATGTAAGTGTTAAACATCGAGCAAACACACGAATCCATCAGATGGCACTCCCATTACAGCAGAGATCGCGTAGCGTCCACGCTACAGACTTGCATTCCGCGCATACTTATATGGCAAAACACAGCGACTGCCGGGAGAGTGTACAGTGGTCGATAGGTATCATATATGTCATCTATNGTATNATGCTTCTACTCTCTAGCGTCCCTCAGAACCTTACTCTGTAACAATTAACTGGTGCAGAAGAAGAAACCAAAAGCCCAGAAANACTTGCGAGATTATTTAGGAGCACGAACGGC]
[+] EMBL AL930851 [NCCCCCCCGGAGGTTTTTNAAAACTTCTAAACAGCCGATTCGCCGTCGCCAGCAGNACACCTATGCAGGCAAATATGTCACTAGCGCATTCCCTTTGCATGGATGTTCGGTTGGAACACTCATTAAATCACACCAAGCCAAGCAAAACAAAACAAACATCACACTACATATTACTCGTACCGCTAGACGGGGCGGTTAATTTTCCTTTGCTTTCTTCCTGTTATGTAAGTGTTAAACATCGAGCAAACACACGAATCCATCAGATGGCACTCCCATTACAGCAGAGATCGCGTAGCGTCCACGCTACAGACTTGCATTCCGCGCATACTTATATGGCAAAACACAGCGACTGCCGGGAGAGTGTACAGTGGTCGATAGGTATCATATATGTCATCTATNGTATNATGCTTCTACTCTCTAGCGTCCCTCAGAACCTTACTCTGTAACAATTAACTGGTGCAGAAGAAGAAACCAAAAGCCCAGAAANACTTGCGAGATTATTTAGGAGCACGAACGGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8251#0 TATAGAGAAATGATTTATATAATTATGCATACGCGTAAAGTAGGAAGTAATAGGGCAAAA 60
consensus_8251#1 ------------------------------------------------------------
consensus_8251#2 ------------------------------------------------------------
consensus_8251#0 TAATACGGTTTAAGGAAACGGTTTACTTGTTACTTTTTCCCTGAGTGCGTGTGAGCGCCC 120
consensus_8251#1 ------------------------------------------------------------
consensus_8251#2 ------------------------------------------------------------
consensus_8251#0 GCCCCGCACGATGTGCAAACGCGAACGTTCCCTGGACCGTTGTGTTTAATTTGAGATTCT 180
consensus_8251#1 ------------------------------------------------------------
consensus_8251#2 ------------------------------------------------------------
consensus_8251#0 GTAAGAATTACAAAATATGCGCGGGCCAAAAGCAACACCCCGA------GATAG--AGCA 232
consensus_8251#1 ----------CCCCACCTCCTTAGCTCAGCAGAATCGCCCCGACGGNTANATAG--AGCA 48
consensus_8251#2 ------------NCCCCCCCGGAGGTTTTTNAAAACTTCTAAACAGCCGATTCGCCGTCG 48
* * * * * * * * *
consensus_8251#0 AAAACGGGAGAAATGGAGAAAACAATATGAACAAAAAAAATTACAAAGGAAACTTGGGCA 292
consensus_8251#1 AAAACGGGAGAAATGGAGAAAACAATATGAACAAAAAAAATTACAAAGGAAACTTGGGCA 108
consensus_8251#2 CCAGCAGNACACCTATGCAGGCAAATATGTCACTAGCGCATTCCCTTTG---CATGGATG 105
* * * * * * * ****** * *** * * * ***
consensus_8251#0 TGGGCATGCAAAATCGTGTATTATTGGAGCTCGCTTTGTAGGATTATAG-TTTTTGCTGT 351
consensus_8251#1 TGGGCATGCAAAATCGTGTATTATTGGAGCTCGCTTTGTAGGATTATAGATTTTTGCTGT 168
consensus_8251#2 TTCGGTTGGAACACT-CATTAAATCACACCAAGCCAAGCAAAACAAAACAAACATCACAC 164
* * ** ** * * ** * * ** * * * * * *
consensus_8251#0 TGTAT-TTACCTTTATTCCTAATTTCTGTTACCTTATATACG-TGTTTCTGG-GGTAAGG 408
consensus_8251#1 TGTAT-TTACCTTTATTCCTAATTTCTGTTACCTTATATACGATGNTTCTGGAGGTAAGG 227
consensus_8251#2 TACATATTACTCGTACCGCTAGACGGGGCGGTTAATTTTCCTTTGCTTTCT----TCCTG 220
* ** **** ** *** * * * * ** ** * *
consensus_8251#0 AACGGTATGAGCTAGAGACGG-AATGGATCACAAACACCCCCCCGGCGGGAAACAAGTCT 467
consensus_8251#1 AACGGTATGAGCTAGAGACGGGAATGGATCACAAAAACCCCCCGGGCGGGAAACAAGTCT 287
consensus_8251#2 TTATGTAAGTGTTAAACATCG--AGCAAACACACGAATCCATCAGATGGCACTCCCATTA 278
*** * * ** * * * * * **** * ** * * ** * * *
consensus_8251#0 TATTTACAATACACTCTAGCTGCA-ATTACGCACTGCTGCTGCACATCTGAAA-TTATGT 525
consensus_8251#1 TATTTACAATACACTCTANCTGCA-ATTACGCACTGCTGCTGCACATCTGAAACTTATGT 346
consensus_8251#2 CAGCAGAGAT-CGCGTAGCGTCCACGCTACAGACTTGCATTCCGCGCAT---ACTTATAT 334
* ** * * * ** *** *** * * * * * **** *
consensus_8251#0 TT--TGTTCT-GCAAAGGCAAGCAAGGC-T-TAGCGCGTAT-AATAATTTAAGAACTTTA 579
consensus_8251#1 CNAACGTTCTAGCAAAGGCAAGCAAGGCCT-TAGCGCGTATCAATAATCNAAGAACTTTA 405
consensus_8251#2 GGCAAAACACAGCGACTGCCGGGAGAGTGTACAGTGGTCGATAGGTATCATATA-TGTCA 393
** * ** * * * * ** * * ** * * * *
consensus_8251#0 AA-AGCGATTCGCGTCG-CAG-CAGCAA-CACCCATGCAAGGCAAATATGTCACTAGCGC 635
consensus_8251#1 AACAGCGATTCGCGTCGACAGACAGCAAANACCCATGCAAGGCAAATATGTCACTAGCGC 465
consensus_8251#2 TCTATNGTATNATGCTTCTACTCTCTAGCGTCCCTCAGAACCTTACTCTGTAACAA---- 449
* * * * * * * *** ** * * *** ** *
consensus_8251#0 ATTGCCTTTTGCATGGATTGTTGGTTGGAACACTCATTAAATCACACCAAGCCAAGCAAA 695
consensus_8251#1 ATTGCCTTTTGCATGGATCGTAGGTTGGAACACTCATTAAAATCAAGCAAGCCAAGCAAA 525
consensus_8251#2 -TTAACTGGTGCA-GAAGAAGAAACCAAAA-GCCCAGAAANACTTGCGAGATTATTTAGG 506
** ** **** * * ** * ** ** * * *
consensus_8251#0 ACAAAACAAACATCACCCTCATATTACTCGTACCGCTAGCGGGGCGGTTAATTTTCCTTT 755
consensus_8251#1 ACAAAACAAACA------------------------------------------------ 537
consensus_8251#2 --AGCACGAACGGC---------------------------------------------- 518
* ** ***
consensus_8251#0 GCTTTCTTCCTGTTTGTTTGTTTAAACATCGAGCAAACACACGAATCCATCAGATGGCAC 815
consensus_8251#1 ------------------------------------------------------------
consensus_8251#2 ------------------------------------------------------------
consensus_8251#0 TCCCATTCAGCAGAGATCGCGTAGCGTCCACGCTACAGACTTGCATCCGCGATATTATAT 875
consensus_8251#1 ------------------------------------------------------------
consensus_8251#2 ------------------------------------------------------------
consensus_8251#0 GCAAAACACAGCGCTGCCGGGAGAGTGTACAGTGTTGTTGGTATCATTTTCATTATGTTA 935
consensus_8251#1 ------------------------------------------------------------
consensus_8251#2 ------------------------------------------------------------
consensus_8251#0 TGCTTCTACTCTCTAGCGTCCCTCAGAACCTTACTTGTAACAATTAATGGTGAGAAGAAG 995
consensus_8251#1 ------------------------------------------------------------
consensus_8251#2 ------------------------------------------------------------
consensus_8251#0 AAAAAAAACCCCAGAAAATTGCGAGATTATTAGAGCACGAAGGCAAAACACACACACACA 1055
consensus_8251#1 ------------------------------------------------------------
consensus_8251#2 ------------------------------------------------------------
consensus_8251#0 TATTCGCAAGCGACCAGAACATGGCAAACTACGTTTTGCACAGGGGCTGAACGCGTAGTG 1115
consensus_8251#1 ------------------------------------------------------------
consensus_8251#2 ------------------------------------------------------------
consensus_8251#0 CCGATAGAATGGATACGAAAACGAAACAAATTAAAATAAACAAATTACCTTACTAGTAAT 1175
consensus_8251#1 ------------------------------------------------------------
consensus_8251#2 ------------------------------------------------------------
consensus_8251#0 GCGAACAAACAAGCAACCAAACAAAACAAAACGAAAACCTACAAAACAAATGTGTTCAAT 1235
consensus_8251#1 ------------------------------------------------------------
consensus_8251#2 ------------------------------------------------------------
consensus_8251#0 ACCGCGGGC 1244
consensus_8251#1 ---------
consensus_8251#2 ---------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||