These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8255#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 760 fasta sequence [CAGAATCGGCNCGAGGTTGTATTGAGTCGGATGCATTTGTCACTGCGGCAGCTCCGCGAAGAGGATTCATTTCGCCGCCCCATACACCCTTGTGGCTGTGTATCCCGCCCGCGACACACCATGGCACCTGTGGCCAGTGAGTAATCGACCCCGAAAGGTAAGCGAGGGCCCCCTCAGTCAGCACGAAAAGAAAGCAGCTCCACTCGTCGTGACGCCCAACCACAACGCCGCTATCCA-GTCCCGTTCGTTTTCGCGTTGGCCCGCGCCAGGTAGATGTCCGCCG-CCCAGAAACAGTCGCACCCGGTCGAGATGGGACCGATCGAGCCGCACCAGCGGCTCCAGAAGCTCGTCGCGGACAGCCAGCGGGTGTCGATCGATCC-GA-CCATGCCGATCAATCGGTACTACCGCTCCGGCAACCAGATCGTCGAGACGGCGGACCGTTCGCTGCGCGAGGGTAACCTGGAGAAAGCGTTCAC-ATTCTATCTGCGGTTCGTGACGATCTTCGTCGAGCTGATACTGGAGCACCCGGGGTACAGGTCGGTGCCGCCGGCGGACAAGCAGC-TGACGAAGGAGAAGATTAAGAAA-A-TCATGCCGCGGGCGGAAGAGATCCGGTCGAAGCTGCTGGAGAAGTACACCACCGAGTATCGGCTGTACCTGAAGCAGC-TCCAGCTGCAGACCGAACAGGA-GGAAAGGGAAGGCGAAGCGCGGAAGGTAGCTGCGACGGCGGCAGCGGCAGCAGCAGCAGCAGCGGCGGCAGCCG] [+] EMBL BX468600 [CAGAATCGGCNCGAGGTTGTATTGAGTCGGATGCATTTGTCACTGCGGCAGCTCCGCGAAGAGGATTCATTTCGCCGCCCCATACACCCTTGTGGCTGTGTATCCCGCCCGCGACACACCATGGCACCTGTGGCCAGTGAGTAATCGACCCCGAAAGGTAAGCGAGGGCCCCCTCAGTCAGCACGAAAAGAAAGCAGCTCCACTCGTCGTGACGCCCAA CACAACGCCGCTATCCAGGTCCCGTTCGTTTTCGCGTTGGCCCGCGCCAGGTAGATGTCCGCCGNNCCAGAAACAGTCGCACCCGGTCGAGATGGGACCGATCGAGCCGCACCAGCGGCTCCAGAAGCTCGTCGCGGACAG CAGCGGGTGTCGATCGATCCGGAGCCATGCCGATCAATCGGTACTACCGCTCCGGCAACCAGATCGTCGAGACGGCGGACCGTTCGCTGCGCGAGGGTAACCTGGAGAAAGCGTTCACGATTCTATCTGCGGTTCGTGACGATCTTCGTCGAGCTGATACTGGAGCACCCGGGGTACAGGTCGGTGCCGCCGGCGGACAAGCAGCGTGACGAAGGAGAAGATTAAGAAANAGTCATGCCGCGGGCGGAAGAGATCCGGTCGAAGCTGCTGGAGAAGTACACCACCGAGTATCGGCTGTACCTGAAGCAGCGTCCAGCTGCAGACCGAACAGGA GGAAAGGGAAG ] [+] EMBL BM589764 [ ccgCCGCGAAGAGGATTCATTCCGCCGCCCCATACACCCTTGTGGCTGTGCATCCCGCCCGCGACACACCATGGCACCTGTGGCCAGTGAGTAATCGACCCCGAAAGGTAAGCGAGGGCCCCCTCAGTCAGCACGAAAAGAAAGCAGCTCCACTCGTCGTGACGCCCAACCACAACGCCGCTATCCA GTCCCGTTCGTTTTCGCGTTGGCCCGCGCCAGGTAGATGTCCGCCG CCCAGAAACAGTCGCACCCGGTCGAGATGGGACCGATCGAGCCGCACCAGCGGCTCCAGAAGCTCGTCGCGGACAGCCAGCGGGTGTCGATCGATCC GA CCATGCCGATCAATCGGTACTACCGCTCCGGCAACCAGATCGTCGAGACGGCGGACCGTTCGCTGCGCGAGGGTAACCTGGAGAAAGCGTTCAC CTTCTATCTGCGGTTCGTGACGATCTTCGTCGAGCTGATACTGGAGCACCCGGGGTACAGGTCGGTGCCGCCGGCGGACAAGCAGC AGACGAAGGAGAAGATTAAGAAA A TCATGCCGCGGGCGGAAGAGATCCGGTCGAAGCTGCTGGAAAAGTACACCACCGAGTATCGGCTGTACCTGAAGCAGC TCCAG ] [+] EMBL AGA284619 [ ACACCCTTGTGGCTGTGTATCCCGCCCGCGACACACCATGGAACCTGTGGCCAGTGAGTAATCGACCCCGAAAGGTAAGCGAGGGCCCCCTCAGTCAGCACGAAAAGAAAGCAGCTCCACTCGTCGTGACGCCCAACCACAACGCCGCTATCCA GTCCCGTTCGTTTTCGCGTTGGCCCGCGCCAGGTAGATGTCCGCCG CCCAGAAACAGTCGCACCCGGTCGAGATGGGACCGATCGAGCCGCACCAGCGGCTCCAGAAGCTCGTCGCGGACAGCCAGCGGGTGTCGATCGATCC GA CCATGCCGATCAATCGGTACTACCGCTCCGGCAACCAGAT ] [+] EMBL AGA282266 [ GGCCAGTGAGTAATCGACCCCGAAAGGTAAGCGAGGGCCCCCTCAGTCAGCACGAAAAGAAAGCAGCTCCACTCGTCGTGACGCCCAACCACAACGCCGCTATCCA GTCCCGTTCGTTTTCGCGTTGGCCCGCGCCAGGTAGATGTCCGCCG CCCAGAAACAGTCGCACCCGGTCGAGATGGGACCGATCGAGCCGCACCAGCGGCTCCAGAAGCTCGTCGCGGACAGCCAGCGGGTGTCGATCGATCC GA CCATGCCGATCAATCGGTACTACCGCTCCGGCAACCAGATCGTCGAGACGGCGGACCGTTCGCTGCGCGAGGGTAACCTGGAGAAAGCGTTCAC ATTCTATCTGCGGTTCGTGACGATCTTCGTCGAGCTGA ] [+] EMBL BM614432 [ ccgcccacgCGTCCGCGAAAGGTAAGCGAGGGCCCCCTCAGTCAGCACGAAAAGAAAGCAGCTCCACTCGTCGTGACGCCCAACCACAACGCCGCTATCCA GTCCCGTTCGTTTTCGCGTTGGCCCGCGCCAGGTAGATGTCCGCCG CCCAGAAACAGTCGCACCCGGTCGAGATGGGACCGATCGAGCCGCACCAGCGGCTCCAGAAGCTCGTCGCGGACAGCCAGCGGGTGTCGATCGATCC GA CCATGCCGATCAATCGGTACTACCGCTCCGGCAACCAGATCGTCGAGACGGCGGACCGTTCGCTGCGCGAGGGTAACCTGGAGAAAGCGTTCAC CTTCTATCTGCGGTTCGTGACGATCTTCGTCGAGCTGATACTGGAGCACCCGGGGTACAGGTCGGTGCCGCCGGCGGACAAGCAGC TGACGAAGGAGAAGATTAAGAAA A TCATGCCGCGGGCGGAAGAGATCCGGTCGAAGCTGCTGGAGAAGTACACCACCGAGTATCGGCTGTACCTGAAGCAGC TCCAGCTGCAGACCGAACAGGAGGGAAAGGGAAGGCGAAGCGCGGAAGGTAGCTGCGACGGCGGCAGC ] [-] EMBL AGA283336 [ GCACCCGGTCGAGATGGGACCAATCGAGCCGCACCAGCGGCTCCAGAAGCTCGTCGCGGACAGCCAGCGGGTGTCGATCGACCC GA CCATGCCGATCAATCGGTACTACCGCTCCGGCAACCAGATCGTCGAGACGGCGGACCGTTCGCTGCGCGAGGGTAACCTGGAGAAAGCGTTCAC ATTCTATCTGCGGTTCGTGACGATCTTCGTCGAGCTGATACTGGAGCACCCGGGGTACAGGTCGGTGCCGCCGGCGGACAAGCAGC TGACGAAGGAGAAGATTAAGAAA A TCATGCCGCGGGCGGAAGAGATCCGGTCGAAGCTGCTGGAGAAGTACACCACCGAGTATCGGCTGTACCTGAAGCAGC TCCAGCTGCAGACCGAACAGGA GGAAAGGGAAGGCGAAGCGCGGAAGGTAGCTGCGACGGCGGCAGCGGCAGCAGCAGCAGCAGCGGCGGCAGCCG] [-] EMBL AGA280568 [ CGCTGCGCGAGGGTAACCTGGAGAAAGCGTTCAC ATTCTATCTGCGGTTCGTGACGATCTTCGTCGAGCTGATACTGGAGCACCCGGGGTACAGGTCGGTGCCGCCGGCGGACAAGCAGC TGACGAAGGAGAAGATTAAGAAA A TCATGCCGCGGGCGGAAGAGATCCGGTCGAAGCTGCTGGAGAAGTACACCACCGAGTATCGGCTGTACCTGAAGCAGC TCCAGCTGCAGACCGAACAGGA GGAAAGGGAAGGCGAAGCGCGGAAGGTAGCTGCGACGGCGGCAGCGGCAGCAGCAGCAGCAGCGGCG ] consensusID : consensus_8255#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 618 fasta sequence [CCGCCCACGCGTCCGCACTGCGGCAGCTCCGCGAAGAGGATTCATTCCGCCGCCCCATACACCCTTGTGGTTGTGCATCCCGCCCGCGACACACCATGGCACCTGTGGCCAGTGAGTAATCGACCCCGAAAGGTAAGCGAGGGCCCCCTCAGTCAGCACGAAAAGAAAGCAGCTCCACTCGTCGTGACGCCCAACCACAACGCCGCTATCCAGTCCCGTTCGTTTTCGCGTTGGCCCGCGCCAGGTAGATGTCCGCCGCCCAGAAACAGTCGCACCCGGTCGAGATGGGACCGATCGAGCCGCACCAGCGGCTCCAGAAGCTCGTCGCGGACAGCCAGCGGGTGTCGATCGATCCGACCATGCCGATCAATCGGTACTACCGCTCCGGCAACCAGATCGTCGAGACGGCGGACCGTTCGCTGCGCGAGGGTAACCTGGGAGAAAGCGTTCACCTTCTATCTGCGGTTCGTGACGATCTTCGTCGAGCTGATACTGGAGCACCCGGGGGTACAGGTCGGTGCCGCCGGCGGACAAGCAGCTGACGAAGGAGAAGATTAAGAAAATCATGCCGCGGGCGGCAAGAGATCCGGTCGAACTTGCTGGAGAAGTACACCACCG] [+] EMBL BM590229 [CCGCCCACGCGTCCGCACTGCGGCAGCTCCGCGAAGAGGATTCATTCCGCCGCCCCATACACCCTTGTGGTTGTGCATCCCGCCCGCGACACACCATGGCACCTGTGGCCAGTGAGTAATCGACCCCGAAAGGTAAGCGAGGGCCCCCTCAGTCAGCACGAAAAGAAAGCAGCTCCACTCGTCGTGACGCCCAACCACAACGCCGCTATCCAGTCCCGTTCGTTTTCGCGTTGGCCCGCGCCAGGTAGATGTCCGCCGCCCAGAAACAGTCGCACCCGGTCGAGATGGGACCGATCGAGCCGCACCAGCGGCTCCAGAAGCTCGTCGCGGACAGCCAGCGGGTGTCGATCGATCCGACCATGCCGATCAATCGGTACTACCGCTCCGGCAACCAGATCGTCGAGACGGCGGACCGTTCGCTGCGCGAGGGTAACCTGGGAGAAAGCGTTCACCTTCTATCTGCGGTTCGTGACGATCTTCGTCGAGCTGATACTGGAGCACCCGGGGGTACAGGTCGGTGCCGCCGGCGGACAAGCAGCTGACGAAGGAGAAGATTAAGAAAATCATGCCGCGGGCGGCAAGAGATCCGGTCGAACTTGCTGGAGAAGTACACCACCG] consensusID : consensus_8255#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 595 fasta sequence [AAGAATNCGGCANGAGGGTGTANGGGCCCCTCAGTCAGCACGAACAAGAAAGCAGCTCCACTCGTCGTGACGCCCAACCACAACGCCGCTATCCAGTCCCGTTCGTTTTCGCGTTGGCCCGCGCCAGGTAGATGTCCGCCGCCCAGAAACAGTCGCACCCGGTCGAGATGGGACCGATCGAGCCGCACCAGCGGCTCCAGAAAGCTCGTCGCGGGACAGCCAGCGGGTTGGTCGGATCGAATCCGACCATGCCCGATCAAATCGGGTACTACCGCTTCCCGGCGAACCAAGATCGTTCGAGGACGGCGGGACCCGTTCGCTGCCGCGGAGGGTAAACCTTGGAGAAAGCGTTCACCATTCGTATCTTGCGCGGTTCGGTTGACCGATCTTCGTTCGGAGGCTGAATACCTGGGAGCACCCGGGGTACAAGGTCGGTTGCCGCCGGCGGGACAAAGCAGCGTGACGAAGGAGGAAGATTACGGAAAAATCATGCCGCGGNGCGGAAGAGATCCGGTCGAAGCTGCTGGAGAAGTACACCACCGAGTATCGGCTGTACCTGAAGCAGCTCCAGCTGCAGACCGAACAGGAGGAAAGG] [+] EMBL BX468578 [AAGAATNCGGCANGAGGGTGTANGGGCCCCTCAGTCAGCACGAACAAGAAAGCAGCTCCACTCGTCGTGACGCCCAACCACAACGCCGCTATCCAGTCCCGTTCGTTTTCGCGTTGGCCCGCGCCAGGTAGATGTCCGCCGCCCAGAAACAGTCGCACCCGGTCGAGATGGGACCGATCGAGCCGCACCAGCGGCTCCAGAAAGCTCGTCGCGGGACAGCCAGCGGGTTGGTCGGATCGAATCCGACCATGCCCGATCAAATCGGGTACTACCGCTTCCCGGCGAACCAAGATCGTTCGAGGACGGCGGGACCCGTTCGCTGCCGCGGAGGGTAAACCTTGGAGAAAGCGTTCACCATTCGTATCTTGCGCGGTTCGGTTGACCGATCTTCGTTCGGAGGCTGAATACCTGGGAGCACCCGGGGTACAAGGTCGGTTGCCGCCGGCGGGACAAAGCAGCGTGACGAAGGAGGAAGATTACGGAAAAATCATGCCGCGGNGCGGAAGAGATCCGGTCGAAGCTGCTGGAGAAGTACACCACCGAGTATCGGCTGTACCTGAAGCAGCTCCAGCTGCAGACCGAACAGGAGGAAAGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8255#0 CAGAATCGGCNCGAGGTTGTATTGAGTCGGATGCATTTGTCACTGCGGCAGCTCCGCGAA 60 consensus_8255#1 ------------------------CCGCCCACGCGTCCG-CACTGCGGCAGCTCCGCGAA 35 consensus_8255#2 ------------------------------------------------------------ consensus_8255#0 GAGGATTCATTTCGCCGCCCCATACACCCTTGTGGCTGTGTATCCCGCCCGCGACACACC 120 consensus_8255#1 GAGGATTCATTCCGCCGCCCCATACACCCTTGTGGTTGTGCATCCCGCCCGCGACACACC 95 consensus_8255#2 ------------------------------------------------------------ consensus_8255#0 ATGGCACCTGTGGCCAGTGAGTAATCGACCCCGAAAGGTAAGCG-AGGGCCCCCTCAGTC 179 consensus_8255#1 ATGGCACCTGTGGCCAGTGAGTAATCGACCCCGAAAGGTAAGCG-AGGGCCCCCTCAGTC 154 consensus_8255#2 ------------------------AAGAATNCGGCANGAGGGTGTANGGGCCCCTCAGTC 36 ** ** * * * * * ** ********** consensus_8255#0 AGCACGAA-AAGAAAGCAGCTCCACTCGTCGTGACGCCCAACCACAACGCCGCTATCCAG 238 consensus_8255#1 AGCACGAA-AAGAAAGCAGCTCCACTCGTCGTGACGCCCAACCACAACGCCGCTATCCAG 213 consensus_8255#2 AGCACGAACAAGAAAGCAGCTCCACTCGTCGTGACGCCCAACCACAACGCCGCTATCCAG 96 ******** *************************************************** consensus_8255#0 TCCCGTTCGTTTTCGCGTTGGCCCGCGCCAGGTAGATGTCCGCCGCCCAGAAACAGTCGC 298 consensus_8255#1 TCCCGTTCGTTTTCGCGTTGGCCCGCGCCAGGTAGATGTCCGCCGCCCAGAAACAGTCGC 273 consensus_8255#2 TCCCGTTCGTTTTCGCGTTGGCCCGCGCCAGGTAGATGTCCGCCGCCCAGAAACAGTCGC 156 ************************************************************ consensus_8255#0 ACCCGGTCGAGATGGGACCGATCGAGCCGCACCAGCGGCTCCAGAA-GCTCGTCGCGG-A 356 consensus_8255#1 ACCCGGTCGAGATGGGACCGATCGAGCCGCACCAGCGGCTCCAGAA-GCTCGTCGCGG-A 331 consensus_8255#2 ACCCGGTCGAGATGGGACCGATCGAGCCGCACCAGCGGCTCCAGAAAGCTCGTCGCGGGA 216 ********************************************** *********** * consensus_8255#0 CAGCCAGCGGGT--GTCG-ATCGA-TCCGACCATGCC-GATCAATC--GGTACTACCGCT 409 consensus_8255#1 CAGCCAGCGGGT--GTCG-ATCGA-TCCGACCATGCC-GATCAATC--GGTACTACCGCT 384 consensus_8255#2 CAGCCAGCGGGTTGGTCGGATCGAATCCGACCATGCCCGATCAAATCGGGTACTACCGCT 276 ************ **** ***** ************ ****** ************ consensus_8255#0 --CCGGCAACC--AGATCGTC--GAGACGGCGGA--CCGTTCGCTGC-GCG-AGGGTAA- 458 consensus_8255#1 --CCGGCAACC--AGATCGTC--GAGACGGCGGA--CCGTTCGCTGC-GCG-AGGGTAA- 433 consensus_8255#2 TCCCGGCGAACCAAGATCGTTCGAGGACGGCGGGACCCGTTCGCTGCCGCGGAGGGTAAA 336 ***** * * ******* ******** *********** *** ******* consensus_8255#0 CCTGG-AGAAAGCGTTCACATTC--TATCT---GCGGTTCG--TGAC-GATCTTCGTC-- 507 consensus_8255#1 CCTGGGAGAAAGCGTTCACCTTC--TATCT---GCGGTTCG--TGAC-GATCTTCGTC-- 483 consensus_8255#2 CCTTGGAGAAAGCGTTCACCATTCGTATCTTGCGCGGTTCGGTTGACCGATCTTCGTTCG 396 *** * ************* * ***** ******** **** ********* consensus_8255#0 -GAGCTGA-TACT--GGAGCACCCGGGG-TACAGGTCGGT-GCCGCCGGCGGAC--AAGC 559 consensus_8255#1 -GAGCTGA-TACT--GGAGCACCCGGGGGTACAGGTCGGT-GCCGCCGGCGGAC--AAGC 536 consensus_8255#2 GAGGCTGAATACCTGGGAGCACCCGGGGTACAAGGTCGGTTGCCGCCGGCGGGACAAAGC 456 ***** *** ************* ******** *********** **** consensus_8255#0 AGC-TGACGAAGGAG-AAGATTAAG--AAAATCATGCCGCGGGCGG-AAGAGATCCGGTC 614 consensus_8255#1 AGC-TGACGAAGGAG-AAGATTAAG--AAAATCATGCCGCGGGCGGCAAGAGATCCGGTC 592 consensus_8255#2 AGCGTGACGAAGGAGGAAGATTACGGAAAAATCATGCCGCGGNGCGGAAGAGATCCGGTC 516 *** *********** ******* * *************** * ************* consensus_8255#0 GAAGCTGCTGGAGAAGTACACCACCGAGTATCGGCTGTACCTGAAGCAGCTCCAGCTGCA 674 consensus_8255#1 GAACTTGCTGGAGAAGTACACCACCG---------------------------------- 618 consensus_8255#2 GAAGCTGCTGGAGAAGTACACCACCGAGTATCGGCTGTACCTGAAGCAGCTCCAGCTGCA 576 *** ********************* consensus_8255#0 GACCGAACAGGAGGAAAGGGAAGGCGAAGCGCGGAAGGTAGCTGCGACGGCGGCAGCGGC 734 consensus_8255#1 ------------------------------------------------------------ consensus_8255#2 GACCGAACAGGAGGAAAGG----------------------------------------- 595 consensus_8255#0 AGCAGCAGCAGCAGCGGCGGCAGCCG 760 consensus_8255#1 -------------------------- consensus_8255#2 -------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||