Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 826 cluster # 826       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_826#0 length = 690 sequences # 1  
consensus_826#1 length = 617 sequences # 1  

consensusID : consensus_826#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 690
fasta sequence
                              [CCGCCCACGCGTCCGGGTCGGTTTGGTGTCGGGACCAAGGAAGTTCAAGTGAATTAACAGAGTGGCTCGATCGATAAGCTTGAGGAAAAAGAAACCCGTAGTGTAGATTGTCATGCAAGTGTGTTTATAGCAAGGCTTTTGTGTGTCGGTTCAACTCTTGAAAGAATGAAAGTGCCTTATTAGCCTAAGCTACTGCTGTGACGCGTCTTACTGATATTGACGACGACGACGAGTGTGCCGACAACGACGAGTGCATCCGGTCAGAAACAATCAATCCAATTGAACGAAAGCATTCGAACGTGGCAGTAGTGACGGTGGTGCAACATCCGACGAAATGAAAAGTGTGTCAGATTTTCTTAATGTTACTTATACTGGCCAGTTGCTGTTAAAGCCATTCCAAGTTTAGTTAATTGTGAGATGAAACTCTTTGCTTAAGTGATCGAAATACCTGCAGACAACGGCGCAGAAGCATTCCAACTTTAGTTAAATTATCTGCGTTATAGACAATGGCGTGCTTTGCAAAGCTCTTCGGTAGAAAGCACGGTTCGTTCAACTTGCCCGATGCTGGCACAGGTGATGGAGAAGTGGTGGCTACACGTGTAACACGGCGGCTTTACGATGATGAGCTCAATCAAATGGCACCGCCCGTGAGTCGAATCAATGGACAAATTGGATTGGAAAAGCTACCGC]

[+] EMBL BM634317             [CCGCCCACGCGTCCGGGTCGGTTTGGTGTCGGGACCAAGGAAGTTCAAGTGAATTAACAGAGTGGCTCGATCGATAAGCTTGAGGAAAAAGAAACCCGTAGTGTAGATTGTCATGCAAGTGTGTTTATAGCAAGGCTTTTGTGTGTCGGTTCAACTCTTGAAAGAATGAAAGTGCCTTATTAGCCTAAGCTACTGCTGTGACGCGTCTTACTGATATTGACGACGACGACGAGTGTGCCGACAACGACGAGTGCATCCGGTCAGAAACAATCAATCCAATTGAACGAAAGCATTCGAACGTGGCAGTAGTGACGGTGGTGCAACATCCGACGAAATGAAAAGTGTGTCAGATTTTCTTAATGTTACTTATACTGGCCAGTTGCTGTTAAAGCCATTCCAAGTTTAGTTAATTGTGAGATGAAACTCTTTGCTTAAGTGATCGAAATACCTGCAGACAACGGCGCAGAAGCATTCCAACTTTAGTTAAATTATCTGCGTTATAGACAATGGCGTGCTTTGCAAAGCTCTTCGGTAGAAAGCACGGTTCGTTCAACTTGCCCGATGCTGGCACAGGTGATGGAGAAGTGGTGGCTACACGTGTAACACGGCGGCTTTACGATGATGAGCTCAATCAAATGGCACCGCCCGTGAGTCGAATCAATGGACAAATTGGATTGGAAAAGCTACCGC]


>consensus_826#0 CCGCCCACGCGTCCGGGTCGGTTTGGTGTCGGGACCAAGGAAGTTCAAGTGAATTAACAG AGTGGCTCGATCGATAAGCTTGAGGAAAAAGAAACCCGTAGTGTAGATTGTCATGCAAGT GTGTTTATAGCAAGGCTTTTGTGTGTCGGTTCAACTCTTGAAAGAATGAAAGTGCCTTAT TAGCCTAAGCTACTGCTGTGACGCGTCTTACTGATATTGACGACGACGACGAGTGTGCCG ACAACGACGAGTGCATCCGGTCAGAAACAATCAATCCAATTGAACGAAAGCATTCGAACG TGGCAGTAGTGACGGTGGTGCAACATCCGACGAAATGAAAAGTGTGTCAGATTTTCTTAA TGTTACTTATACTGGCCAGTTGCTGTTAAAGCCATTCCAAGTTTAGTTAATTGTGAGATG AAACTCTTTGCTTAAGTGATCGAAATACCTGCAGACAACGGCGCAGAAGCATTCCAACTT TAGTTAAATTATCTGCGTTATAGACAATGGCGTGCTTTGCAAAGCTCTTCGGTAGAAAGC ACGGTTCGTTCAACTTGCCCGATGCTGGCACAGGTGATGGAGAAGTGGTGGCTACACGTG TAACACGGCGGCTTTACGATGATGAGCTCAATCAAATGGCACCGCCCGTGAGTCGAATCA ATGGACAAATTGGATTGGAAAAGCTACCGC



consensusID : consensus_826#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 617
fasta sequence
                              [CCGGGTAAGATTCGGTCGGTTTGGTGTCGGGACCAAGGAAGTTCAAGTGAATTAACAGAGTGGCTCGATCGATAAGCTTGAGGAAAAAGAAACCCGTAGTGTAGATTGTCATGCAAGTGTGTTTATAGCAAGGCTTTTGTGTGTCGGTTCAACTCTTGAAAGAATGAAAGTGCCTTATTAGCCTAAGCTACTGCTGTGACGCGTCTTACTGATATTGACGACGACGACGAGTGTGCCGACAACGACGAGTGCATCCGGTCAGAAACAATCAATCCAATTGAACGAAAGCATTCGAACGTGGCAGTAGTGACGGTGGTGCAACATCCGACGAAATGAAAAGTGTGTCAGATTTTCTTAATGTTACTTATACTGGCCAGTTGCTGTTAAAGCCATTCCAAGTTTAGTTAATTGTGAGATGAAACTCTTTGCTTAAGTGATCGAAATACCTGCAGACAACGGCGCAGAAGCATTCCAACTTTAGTTAAATTATCTGCGTTATAGACAATGGCGTGCTTTGCAAAGCTCTTCGGTAGAAAGCACGGTTCGTTCAACTTGCCCGATGCTGGCACAGGTGATGGAGAAGTGGTGGCTACACGTGTAACACGGCGGCTTTACGA]

[+] EMBL BM617082             [CCGGGTAAGATTCGGTCGGTTTGGTGTCGGGACCAAGGAAGTTCAAGTGAATTAACAGAGTGGCTCGATCGATAAGCTTGAGGAAAAAGAAACCCGTAGTGTAGATTGTCATGCAAGTGTGTTTATAGCAAGGCTTTTGTGTGTCGGTTCAACTCTTGAAAGAATGAAAGTGCCTTATTAGCCTAAGCTACTGCTGTGACGCGTCTTACTGATATTGACGACGACGACGAGTGTGCCGACAACGACGAGTGCATCCGGTCAGAAACAATCAATCCAATTGAACGAAAGCATTCGAACGTGGCAGTAGTGACGGTGGTGCAACATCCGACGAAATGAAAAGTGTGTCAGATTTTCTTAATGTTACTTATACTGGCCAGTTGCTGTTAAAGCCATTCCAAGTTTAGTTAATTGTGAGATGAAACTCTTTGCTTAAGTGATCGAAATACCTGCAGACAACGGCGCAGAAGCATTCCAACTTTAGTTAAATTATCTGCGTTATAGACAATGGCGTGCTTTGCAAAGCTCTTCGGTAGAAAGCACGGTTCGTTCAACTTGCCCGATGCTGGCACAGGTGATGGAGAAGTGGTGGCTACACGTGTAACACGGCGGCTTTACGA]


>consensus_826#1 CCGGGTAAGATTCGGTCGGTTTGGTGTCGGGACCAAGGAAGTTCAAGTGAATTAACAGAG TGGCTCGATCGATAAGCTTGAGGAAAAAGAAACCCGTAGTGTAGATTGTCATGCAAGTGT GTTTATAGCAAGGCTTTTGTGTGTCGGTTCAACTCTTGAAAGAATGAAAGTGCCTTATTA GCCTAAGCTACTGCTGTGACGCGTCTTACTGATATTGACGACGACGACGAGTGTGCCGAC AACGACGAGTGCATCCGGTCAGAAACAATCAATCCAATTGAACGAAAGCATTCGAACGTG GCAGTAGTGACGGTGGTGCAACATCCGACGAAATGAAAAGTGTGTCAGATTTTCTTAATG TTACTTATACTGGCCAGTTGCTGTTAAAGCCATTCCAAGTTTAGTTAATTGTGAGATGAA ACTCTTTGCTTAAGTGATCGAAATACCTGCAGACAACGGCGCAGAAGCATTCCAACTTTA GTTAAATTATCTGCGTTATAGACAATGGCGTGCTTTGCAAAGCTCTTCGGTAGAAAGCAC GGTTCGTTCAACTTGCCCGATGCTGGCACAGGTGATGGAGAAGTGGTGGCTACACGTGTA ACACGGCGGCTTTACGA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_826#0      CCGCCCACGCGTCCGGGTCGGTTTGGTGTCGGGACCAAGGAAGTTCAAGTGAATTAACAG 60
consensus_826#1      CCGGGTAAGATTC--GGTCGGTTTGGTGTCGGGACCAAGGAAGTTCAAGTGAATTAACAG 58
                     ***   * *  **  *********************************************

consensus_826#0      AGTGGCTCGATCGATAAGCTTGAGGAAAAAGAAACCCGTAGTGTAGATTGTCATGCAAGT 120
consensus_826#1      AGTGGCTCGATCGATAAGCTTGAGGAAAAAGAAACCCGTAGTGTAGATTGTCATGCAAGT 118
                     ************************************************************

consensus_826#0      GTGTTTATAGCAAGGCTTTTGTGTGTCGGTTCAACTCTTGAAAGAATGAAAGTGCCTTAT 180
consensus_826#1      GTGTTTATAGCAAGGCTTTTGTGTGTCGGTTCAACTCTTGAAAGAATGAAAGTGCCTTAT 178
                     ************************************************************

consensus_826#0      TAGCCTAAGCTACTGCTGTGACGCGTCTTACTGATATTGACGACGACGACGAGTGTGCCG 240
consensus_826#1      TAGCCTAAGCTACTGCTGTGACGCGTCTTACTGATATTGACGACGACGACGAGTGTGCCG 238
                     ************************************************************

consensus_826#0      ACAACGACGAGTGCATCCGGTCAGAAACAATCAATCCAATTGAACGAAAGCATTCGAACG 300
consensus_826#1      ACAACGACGAGTGCATCCGGTCAGAAACAATCAATCCAATTGAACGAAAGCATTCGAACG 298
                     ************************************************************

consensus_826#0      TGGCAGTAGTGACGGTGGTGCAACATCCGACGAAATGAAAAGTGTGTCAGATTTTCTTAA 360
consensus_826#1      TGGCAGTAGTGACGGTGGTGCAACATCCGACGAAATGAAAAGTGTGTCAGATTTTCTTAA 358
                     ************************************************************

consensus_826#0      TGTTACTTATACTGGCCAGTTGCTGTTAAAGCCATTCCAAGTTTAGTTAATTGTGAGATG 420
consensus_826#1      TGTTACTTATACTGGCCAGTTGCTGTTAAAGCCATTCCAAGTTTAGTTAATTGTGAGATG 418
                     ************************************************************

consensus_826#0      AAACTCTTTGCTTAAGTGATCGAAATACCTGCAGACAACGGCGCAGAAGCATTCCAACTT 480
consensus_826#1      AAACTCTTTGCTTAAGTGATCGAAATACCTGCAGACAACGGCGCAGAAGCATTCCAACTT 478
                     ************************************************************

consensus_826#0      TAGTTAAATTATCTGCGTTATAGACAATGGCGTGCTTTGCAAAGCTCTTCGGTAGAAAGC 540
consensus_826#1      TAGTTAAATTATCTGCGTTATAGACAATGGCGTGCTTTGCAAAGCTCTTCGGTAGAAAGC 538
                     ************************************************************

consensus_826#0      ACGGTTCGTTCAACTTGCCCGATGCTGGCACAGGTGATGGAGAAGTGGTGGCTACACGTG 600
consensus_826#1      ACGGTTCGTTCAACTTGCCCGATGCTGGCACAGGTGATGGAGAAGTGGTGGCTACACGTG 598
                     ************************************************************

consensus_826#0      TAACACGGCGGCTTTACGATGATGAGCTCAATCAAATGGCACCGCCCGTGAGTCGAATCA 660
consensus_826#1      TAACACGGCGGCTTTACGA----------------------------------------- 617
                     *******************                                         

consensus_826#0      ATGGACAAATTGGATTGGAAAAGCTACCGC 690
consensus_826#1      ------------------------------
                                                   




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)