These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_826#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 690 fasta sequence [CCGCCCACGCGTCCGGGTCGGTTTGGTGTCGGGACCAAGGAAGTTCAAGTGAATTAACAGAGTGGCTCGATCGATAAGCTTGAGGAAAAAGAAACCCGTAGTGTAGATTGTCATGCAAGTGTGTTTATAGCAAGGCTTTTGTGTGTCGGTTCAACTCTTGAAAGAATGAAAGTGCCTTATTAGCCTAAGCTACTGCTGTGACGCGTCTTACTGATATTGACGACGACGACGAGTGTGCCGACAACGACGAGTGCATCCGGTCAGAAACAATCAATCCAATTGAACGAAAGCATTCGAACGTGGCAGTAGTGACGGTGGTGCAACATCCGACGAAATGAAAAGTGTGTCAGATTTTCTTAATGTTACTTATACTGGCCAGTTGCTGTTAAAGCCATTCCAAGTTTAGTTAATTGTGAGATGAAACTCTTTGCTTAAGTGATCGAAATACCTGCAGACAACGGCGCAGAAGCATTCCAACTTTAGTTAAATTATCTGCGTTATAGACAATGGCGTGCTTTGCAAAGCTCTTCGGTAGAAAGCACGGTTCGTTCAACTTGCCCGATGCTGGCACAGGTGATGGAGAAGTGGTGGCTACACGTGTAACACGGCGGCTTTACGATGATGAGCTCAATCAAATGGCACCGCCCGTGAGTCGAATCAATGGACAAATTGGATTGGAAAAGCTACCGC] [+] EMBL BM634317 [CCGCCCACGCGTCCGGGTCGGTTTGGTGTCGGGACCAAGGAAGTTCAAGTGAATTAACAGAGTGGCTCGATCGATAAGCTTGAGGAAAAAGAAACCCGTAGTGTAGATTGTCATGCAAGTGTGTTTATAGCAAGGCTTTTGTGTGTCGGTTCAACTCTTGAAAGAATGAAAGTGCCTTATTAGCCTAAGCTACTGCTGTGACGCGTCTTACTGATATTGACGACGACGACGAGTGTGCCGACAACGACGAGTGCATCCGGTCAGAAACAATCAATCCAATTGAACGAAAGCATTCGAACGTGGCAGTAGTGACGGTGGTGCAACATCCGACGAAATGAAAAGTGTGTCAGATTTTCTTAATGTTACTTATACTGGCCAGTTGCTGTTAAAGCCATTCCAAGTTTAGTTAATTGTGAGATGAAACTCTTTGCTTAAGTGATCGAAATACCTGCAGACAACGGCGCAGAAGCATTCCAACTTTAGTTAAATTATCTGCGTTATAGACAATGGCGTGCTTTGCAAAGCTCTTCGGTAGAAAGCACGGTTCGTTCAACTTGCCCGATGCTGGCACAGGTGATGGAGAAGTGGTGGCTACACGTGTAACACGGCGGCTTTACGATGATGAGCTCAATCAAATGGCACCGCCCGTGAGTCGAATCAATGGACAAATTGGATTGGAAAAGCTACCGC] consensusID : consensus_826#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 617 fasta sequence [CCGGGTAAGATTCGGTCGGTTTGGTGTCGGGACCAAGGAAGTTCAAGTGAATTAACAGAGTGGCTCGATCGATAAGCTTGAGGAAAAAGAAACCCGTAGTGTAGATTGTCATGCAAGTGTGTTTATAGCAAGGCTTTTGTGTGTCGGTTCAACTCTTGAAAGAATGAAAGTGCCTTATTAGCCTAAGCTACTGCTGTGACGCGTCTTACTGATATTGACGACGACGACGAGTGTGCCGACAACGACGAGTGCATCCGGTCAGAAACAATCAATCCAATTGAACGAAAGCATTCGAACGTGGCAGTAGTGACGGTGGTGCAACATCCGACGAAATGAAAAGTGTGTCAGATTTTCTTAATGTTACTTATACTGGCCAGTTGCTGTTAAAGCCATTCCAAGTTTAGTTAATTGTGAGATGAAACTCTTTGCTTAAGTGATCGAAATACCTGCAGACAACGGCGCAGAAGCATTCCAACTTTAGTTAAATTATCTGCGTTATAGACAATGGCGTGCTTTGCAAAGCTCTTCGGTAGAAAGCACGGTTCGTTCAACTTGCCCGATGCTGGCACAGGTGATGGAGAAGTGGTGGCTACACGTGTAACACGGCGGCTTTACGA] [+] EMBL BM617082 [CCGGGTAAGATTCGGTCGGTTTGGTGTCGGGACCAAGGAAGTTCAAGTGAATTAACAGAGTGGCTCGATCGATAAGCTTGAGGAAAAAGAAACCCGTAGTGTAGATTGTCATGCAAGTGTGTTTATAGCAAGGCTTTTGTGTGTCGGTTCAACTCTTGAAAGAATGAAAGTGCCTTATTAGCCTAAGCTACTGCTGTGACGCGTCTTACTGATATTGACGACGACGACGAGTGTGCCGACAACGACGAGTGCATCCGGTCAGAAACAATCAATCCAATTGAACGAAAGCATTCGAACGTGGCAGTAGTGACGGTGGTGCAACATCCGACGAAATGAAAAGTGTGTCAGATTTTCTTAATGTTACTTATACTGGCCAGTTGCTGTTAAAGCCATTCCAAGTTTAGTTAATTGTGAGATGAAACTCTTTGCTTAAGTGATCGAAATACCTGCAGACAACGGCGCAGAAGCATTCCAACTTTAGTTAAATTATCTGCGTTATAGACAATGGCGTGCTTTGCAAAGCTCTTCGGTAGAAAGCACGGTTCGTTCAACTTGCCCGATGCTGGCACAGGTGATGGAGAAGTGGTGGCTACACGTGTAACACGGCGGCTTTACGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_826#0 CCGCCCACGCGTCCGGGTCGGTTTGGTGTCGGGACCAAGGAAGTTCAAGTGAATTAACAG 60 consensus_826#1 CCGGGTAAGATTC--GGTCGGTTTGGTGTCGGGACCAAGGAAGTTCAAGTGAATTAACAG 58 *** * * ** ********************************************* consensus_826#0 AGTGGCTCGATCGATAAGCTTGAGGAAAAAGAAACCCGTAGTGTAGATTGTCATGCAAGT 120 consensus_826#1 AGTGGCTCGATCGATAAGCTTGAGGAAAAAGAAACCCGTAGTGTAGATTGTCATGCAAGT 118 ************************************************************ consensus_826#0 GTGTTTATAGCAAGGCTTTTGTGTGTCGGTTCAACTCTTGAAAGAATGAAAGTGCCTTAT 180 consensus_826#1 GTGTTTATAGCAAGGCTTTTGTGTGTCGGTTCAACTCTTGAAAGAATGAAAGTGCCTTAT 178 ************************************************************ consensus_826#0 TAGCCTAAGCTACTGCTGTGACGCGTCTTACTGATATTGACGACGACGACGAGTGTGCCG 240 consensus_826#1 TAGCCTAAGCTACTGCTGTGACGCGTCTTACTGATATTGACGACGACGACGAGTGTGCCG 238 ************************************************************ consensus_826#0 ACAACGACGAGTGCATCCGGTCAGAAACAATCAATCCAATTGAACGAAAGCATTCGAACG 300 consensus_826#1 ACAACGACGAGTGCATCCGGTCAGAAACAATCAATCCAATTGAACGAAAGCATTCGAACG 298 ************************************************************ consensus_826#0 TGGCAGTAGTGACGGTGGTGCAACATCCGACGAAATGAAAAGTGTGTCAGATTTTCTTAA 360 consensus_826#1 TGGCAGTAGTGACGGTGGTGCAACATCCGACGAAATGAAAAGTGTGTCAGATTTTCTTAA 358 ************************************************************ consensus_826#0 TGTTACTTATACTGGCCAGTTGCTGTTAAAGCCATTCCAAGTTTAGTTAATTGTGAGATG 420 consensus_826#1 TGTTACTTATACTGGCCAGTTGCTGTTAAAGCCATTCCAAGTTTAGTTAATTGTGAGATG 418 ************************************************************ consensus_826#0 AAACTCTTTGCTTAAGTGATCGAAATACCTGCAGACAACGGCGCAGAAGCATTCCAACTT 480 consensus_826#1 AAACTCTTTGCTTAAGTGATCGAAATACCTGCAGACAACGGCGCAGAAGCATTCCAACTT 478 ************************************************************ consensus_826#0 TAGTTAAATTATCTGCGTTATAGACAATGGCGTGCTTTGCAAAGCTCTTCGGTAGAAAGC 540 consensus_826#1 TAGTTAAATTATCTGCGTTATAGACAATGGCGTGCTTTGCAAAGCTCTTCGGTAGAAAGC 538 ************************************************************ consensus_826#0 ACGGTTCGTTCAACTTGCCCGATGCTGGCACAGGTGATGGAGAAGTGGTGGCTACACGTG 600 consensus_826#1 ACGGTTCGTTCAACTTGCCCGATGCTGGCACAGGTGATGGAGAAGTGGTGGCTACACGTG 598 ************************************************************ consensus_826#0 TAACACGGCGGCTTTACGATGATGAGCTCAATCAAATGGCACCGCCCGTGAGTCGAATCA 660 consensus_826#1 TAACACGGCGGCTTTACGA----------------------------------------- 617 ******************* consensus_826#0 ATGGACAAATTGGATTGGAAAAGCTACCGC 690 consensus_826#1 ------------------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||