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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_828#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1239 fasta sequence
[GGCAGAATCCCCCGAGGTTAAAATGCGAAGGCACATCTCTGAGATACTTGTTCGCGTGGTGTTATTGAGTATTTTATTACCAGTCGCTTTGTTATCCCCATACAAACGGGAAGTCCAAATATTAGAATGGCAAACATTATAACTATACTACATCTGCACCAACGTGTGAGCACTGGCTGCGTTAGCTCTTATAATGATTGCATATCATGTTGTGACAGCGATCTTATACGGTTTACTTATCCACAGACGATATAGATCCAGTCAATCAATCATTCATGCAACTGGACGATATCGAAGCCGCAGCGCAGACAAATGTAGAGTCCTCTTCATTTTTCATTCAGTTTGTTGAGGAAGCAAGTAACAGTTATTCTACTCTTGCACATTAACTATCCTTCTGGTAGTACTCGCTACCTCTTTTCTGAAAGTTAGTANCTCAAGACCAAGACCAGATTTCCTCAGCAGGTGTTCCCCGCAGGCTGGATTCAAAATGATATTCAGTCACTTTTACAATTGCCTCTCATACCTAAATGCCAGAATAAAGACGCGGCTTTGACTACGAAGCATGGTAGACAAATCATTCCCTAGTGGACACTCTTCTAATGCGTTCGCATCTGCCACACCTTGGCACCAGCCCTTGGNACNNACACNATTACCACATTNTTCAAACTTAGACACACACACTATANAGGTCTCTCAAACTCTCGGGAATCGANTTACTATTCATCTGGTACCCGCAGCCTTACAATACGGGNTTCCACGCAAAGGACACTATTNAGGACTACACTTATCCATTCATTCCTACAGATTGTGGCCATATAACACGGTGCGATNACTCGGAACTCCTATGGGCAGCGACTGGNCTCTGGGTTACCGCCGCCTTATTCACCGGGCTTGCCCGCGGTACAAAGGAAAACACTTTCACCCGGGACCAACACTGGTCATGGGCAACTCACANAGCACAACANCCGAAAAGCAACATGGGTAGTTCCCCATTAACGTAATTCCGGCGCCTTAAATTGGGGACATTTCAGTGGNGAAGGACCAAATCATCGGGACAACATAAACATTACAAGGGATTACACAATGGGGAATATCCTCCACCCAGAAAGTCACTTATAACAACGAAANCGCCTGGCCACAATAANCGCCAGTAAAAATTCGTAGANANNTCCTCNACCTACGGCGCAAGNTCAGTCGCGAGCNCCAGGCAAAACNNTCNAGCACGGATACACAAGCCNT]
[+] EMBL AL931977 [GGCAGAATCCCCCGAGGTTAAAATGCGAAGGCACATCTCTGAGATACTTGTTCGCGTGGTGTTATTGAGTATTTTATTACCAGTCGCTTTGTTATCCCCATACAAACGGGAAGTCCAAATATTAGAATGGCAAACATTATAACTATACTACATCTGCACCAACGTGTGAGCACTGGCTGCGTTAGCTCTTATAATGATTGCATATCATGTTGTGACAGCGATCTTATACGGTTTACTTATCCACAGACGATATAGATCCAGTCAATCAATCATTCATGCAACTGGACGATATCGAAGCCGCAGCGCAGACAAATGTAGAGTCCTCTTCATTTTTCATTCAGTTTGTTGAGGAAGCAAGTAACAGTTATTCTACTCTTGCACATTAACTATCCTTCTGGTAGTACTCGCTACCTCTTTTCTGAAAGTTAGTANCTCAAGACCAAGACCAGATTTCCTCAGCAGGTGTTCCCCGCAGGCTGGATTCAAAATGATATTCAGTCACTTTTACAATTGCCTCTCATACCTAAATGCCAGAATAAAGACGCGGCTTTGACTACGAAGCATGGTAGACAAATCATTCCCTAGTGGACACTCTTCTAATGCGTTCGCATCTGCCACACCTTGGCACCAGCCCTTGGNACNNACACNATTACCACATTNTTCAAACTTAGACACACACACTATANAGGTCTCTCAAACTCTCGGGAATCGANTTACTATTCATCTGGTACCCGCAGCCTTACAATACGGGNTTCCACGCAAAGGACACTATTNAGGACTACACTTATCCATTCATTCCTACAGATTGTGGCCATATAACACGGTGCGATNACTCGGAACTCCTATGGGCAGCGACTGGNCTCTGGGTTACCGCCGCCTTATTCACCGGGCTTGCCCGCGGTACAAAGGAAAACACTTTCACCCGGGACCAACACTGGTCATGGGCAACTCACANAGCACAACANCCGAAAAGCAACATGGGTAGTTCCCCATTAACGTAATTCCGGCGCCTTAAATTGGGGACATTTCAGTGGNGAAGGACCAAATCATCGGGACAACATAAACATTACAAGGGATTACACAATGGGGAATATCCTCCACCCAGAAAGTCACTTATAACAACGAAANCGCCTGGCCACAATAANCGCCAGTAAAAATTCGTAGANANNTCCTCNACCTACGGCGCAAGNTCAGTCGCGAGCNCCAGGCAAAACNNTCNAGCACGGATACACAAGCCNT]
consensusID : consensus_828#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 673 fasta sequence
[CACATCTCTGAGATACTTGTTCGCGTGGTGTTATTGAGTATTTTATTACCAGTCGCCTTATTATCCCCATACAAACGGGAAGTCCAAATATTAGAATGGCAAAATTATAACTATACTCATCTGCACCAACGTGTGAGCACTGGCGCGTTAGCTCTTATAATGATTGCATATCATGTTGTGACAGCGATCTTATACGGTTTACTTATCCACAGACGATATAGATCCAGTCAATCAATCATTCATGCAACGGACGATATCGAAGCCGCAGCGCAGACAAATGTAGAGTCCTCTTCATTTTTCATTCAGTTGTTGAGGAAGCAAGTAAAGTTATTCTACTCTTGCACATTAACTATCCTTCTGGTAGTACTCGCTACCTCTTTTCTGAAAGTTTTTGTTTCAAGACCAAGACCAGATTTCCTCAGCAGGTGTTCCCCGCCAGGCTGGATTCAAAATGATATTCAGTCACTTTTACAATTGCCTCTCATACCTAAATGCCAGAATAAAGACGCGGCTTTGATAGAAGATGGTAGAAAATCATTCCCTAGTGGACACTCTTCTAATGCGTTCGCATCTGCAACTTGGACAGCCTTGTTTTTTTATTACCACATTTTCAAATTAGACAAAAAATATAGGTCTCTCAAACTCTCGGNTTCGTTTCTATTATTGGTACCCG]
[+] EMBL BX620619 [CACATCTCTGAGATACTTGTTCGCGTGGTGTTATTGAGTATTTTATTACCAGTCGCCTTATTATCCCCATACAAACGGGAAGTCCAAATATTAGAATGGCAAAATTATAACTATACTCATCTGCACCAACGTGTGAGCACTGGCGCGTTAGCTCTTATAATGATTGCATATCATGTTGTGACAGCGATCTTATACGGTTTACTTATCCACAGACGATATAGATCCAGTCAATCAATCATTCATGCAACGGACGATATCGAAGCCGCAGCGCAGACAAATGTAGAGTCCTCTTCATTTTTCATTCAGTTGTTGAGGAAGCAAGTAAAGTTATTCTACTCTTGCACATTAACTATCCTTCTGGTAGTACTCGCTACCTCTTTTCTGAAAGTTTTTGTTTCAAGACCAAGACCAGATTTCCTCAGCAGGTGTTCCCCGCCAGGCTGGATTCAAAATGATATTCAGTCACTTTTACAATTGCCTCTCATACCTAAATGCCAGAATAAAGACGCGGCTTTGATAGAAGATGGTAGAAAATCATTCCCTAGTGGACACTCTTCTAATGCGTTCGCATCTGCAACTTGGACAGCCTTGTTTTTTTATTACCACATTTTCAAATTAGACAAAAAATATAGGTCTCTCAAACTCTCGGNTTCGTTTCTATTATTGGTACCCG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_828#0 GGCAGAATCCCCCGAGGTTAAAATGCGAAGGCACATCTCTGAGATACTTGTTCGCGTGGT 60
consensus_828#1 -------------------------------CACATCTCTGAGATACTTGTTCGCGTGGT 29
*****************************
consensus_828#0 GTTATTGAGTATTTTATTACCAGTCGCTTTGTTATCCCCATACAAACGGGAAGTCCAAAT 120
consensus_828#1 GTTATTGAGTATTTTATTACCAGTCGCCTTATTATCCCCATACAAACGGGAAGTCCAAAT 89
*************************** ** *****************************
consensus_828#0 ATTAGAATGGCAAACATTATAACTATACTACATCTGCACCAACGTGTGAGCACTGGCTGC 180
consensus_828#1 ATTAGAATGGCAAA-ATTATAACTATACT-CATCTGCACCAACGTGTGAGCACTGGC-GC 146
************** ************** *************************** **
consensus_828#0 GTTAGCTCTTATAATGATTGCATATCATGTTGTGACAGCGATCTTATACGGTTTACTTAT 240
consensus_828#1 GTTAGCTCTTATAATGATTGCATATCATGTTGTGACAGCGATCTTATACGGTTTACTTAT 206
************************************************************
consensus_828#0 CCACAGACGATATAGATCCAGTCAATCAATCATTCATGCAACTGGACGATATCGAAGCCG 300
consensus_828#1 CCACAGACGATATAGATCCAGTCAATCAATCATTCATGCAAC-GGACGATATCGAAGCCG 265
****************************************** *****************
consensus_828#0 CAGCGCAGACAAATGTAGAGTCCTCTTCATTTTTCATTCAGTTTGTTGAGGAAGCAAGTA 360
consensus_828#1 CAGCGCAGACAAATGTAGAGTCCTCTTCATTTTTCATTCAGTT-GTTGAGGAAGCAAGTA 324
******************************************* ****************
consensus_828#0 ACAGTTATTCTACTCTTGCACATTAACTATCCTTCTGGTAGTACTCGCTACCTCTTTTCT 420
consensus_828#1 A-AGTTATTCTACTCTTGCACATTAACTATCCTTCTGGTAGTACTCGCTACCTCTTTTCT 383
* **********************************************************
consensus_828#0 GAAAGTTAGTANCTCAAGACCAAGACCAGATTTCCTCAGCAGGTGTTCCCCGC-AGGCTG 479
consensus_828#1 GAAAGTTTTTGTTTCAAGACCAAGACCAGATTTCCTCAGCAGGTGTTCCCCGCCAGGCTG 443
******* * **************************************** ******
consensus_828#0 GATTCAAAATGATATTCAGTCACTTTTACAATTGCCTCTCATACCTAAATGCCAGAATAA 539
consensus_828#1 GATTCAAAATGATATTCAGTCACTTTTACAATTGCCTCTCATACCTAAATGCCAGAATAA 503
************************************************************
consensus_828#0 AGACGCGGCTTTGACTACGAAGCATGGTAGACAAATCATTCCCTAGTGGACACTCTTCTA 599
consensus_828#1 AGACGCGGCTTTG---ATAGAAGATGGTAGA-AAATCATTCCCTAGTGGACACTCTTCTA 559
************* * * ******** ****************************
consensus_828#0 ATGCGTTCGCATCTGCCACACCTTGGCACCAGCCCTTGGNACNNACACNATTACCACATT 659
consensus_828#1 ATGCGTTCGCATCTGC---AACTTGGA--CAGCCTT--GTTTTT---TTATTACCACATT 609
**************** * ***** ***** * * ***********
consensus_828#0 NTTCAAACTTAGACACACACACTATANAGGTCTCTCAAACTCTCGGGAATCGANTTACTA 719
consensus_828#1 TTC--AAATTAGACAAAAA----ATATAGGTCTCTCAAACTCTCGGNTTCGTTTCTATTA 663
* ** ******* * * *** ******************* ** **
consensus_828#0 TTCATCTGGTACCCGCAGCCTTACAATACGGGNTTCCACGCAAAGGACACTATTNAGGAC 779
consensus_828#1 T-----TGGTACCCG--------------------------------------------- 673
* *********
consensus_828#0 TACACTTATCCATTCATTCCTACAGATTGTGGCCATATAACACGGTGCGATNACTCGGAA 839
consensus_828#1 ------------------------------------------------------------
consensus_828#0 CTCCTATGGGCAGCGACTGGNCTCTGGGTTACCGCCGCCTTATTCACCGGGCTTGCCCGC 899
consensus_828#1 ------------------------------------------------------------
consensus_828#0 GGTACAAAGGAAAACACTTTCACCCGGGACCAACACTGGTCATGGGCAACTCACANAGCA 959
consensus_828#1 ------------------------------------------------------------
consensus_828#0 CAACANCCGAAAAGCAACATGGGTAGTTCCCCATTAACGTAATTCCGGCGCCTTAAATTG 1019
consensus_828#1 ------------------------------------------------------------
consensus_828#0 GGGACATTTCAGTGGNGAAGGACCAAATCATCGGGACAACATAAACATTACAAGGGATTA 1079
consensus_828#1 ------------------------------------------------------------
consensus_828#0 CACAATGGGGAATATCCTCCACCCAGAAAGTCACTTATAACAACGAAANCGCCTGGCCAC 1139
consensus_828#1 ------------------------------------------------------------
consensus_828#0 AATAANCGCCAGTAAAAATTCGTAGANANNTCCTCNACCTACGGCGCAAGNTCAGTCGCG 1199
consensus_828#1 ------------------------------------------------------------
consensus_828#0 AGCNCCAGGCAAAACNNTCNAGCACGGATACACAAGCCNT 1239
consensus_828#1 ----------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||