These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_829#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 692 fasta sequence [CCGCCCACGCGTCCGCAGCTTTGTTTTAAAATTAAGCGAGGGGGGTTTTGTCACAAATCAATGTTTTTTGGCTATATTAGTTAACGTGTTTTTTGTTGTAATGTGTTCCTTATGAAAATCAAAACTGCACACACACACACACACAATATCGTGTTTCTCTTTATGCATGAAATCAGGCCCTGGTTTCATGCGTTCTAAATTATTTGTCAAAAGGCTGTAAAGGCCCGAGGCAGGAGGAGGAGGAGTATGTACGAGGATGCGCTTGAGGAGGAAAGCGGTTAATTTTCGCCTGTAGAAAGGTCTGTGATGGTGGTGATAATGAAAAGCATTATATAGAAAGTAATCGGTGTGTGTGCGTGTGTAATTAGTGTATGAATGTACTGTGTAGTTTTGTCAGAAGGGAGGGAAGAGAACAGATCGACCGCGATGATCGTGCGATCATGTACGTACAGTTTACTCTGAATATAAGCCCCAAGATATATATCCTGTCCCATTTACCCGAACAAAGTGAAATATTATGGCAAGAAAAACTGAAAAACAGTAAATTCAAATGTAAACTCGAATAAGAAATATCGAGAAAATGTCATAATCAATCAATCAAAACGATGGGCTGCAAATGAAGTAATAGAAAGGAGAAGAACATATGCAAACAACAGCAACAAAAATGTGTCATTAAATGAAATTGGCAGAGA] [+] EMBL BM645706 [CCGCCCACGCGTCCGCAGCTTTGTTTTAAAATTAAGCGAGGGGGGTTTTGTCACAAATCAATGTTTTTTGGCTATATTAGTTAACGTGTTTTTTGTTGTAATGTGTTCCTTATGAAAATCAAAACTGCACACACACACACACACAATATCGTGTTTCTCTTTATGCATGAAATCAGGCCCTGGTTTCATGCGTTCTAAATTATTTGTCAAAAGGCTGTAAAGGCCCGAGGCAGGAGGAGGAGGAGTATGTACGAGGATGCGCTTGAGGAGGAAAGCGGTTAATTTTCGCCTGTAGAAAGGTCTGTGATGGTGGTGATAATGAAAAGCATTATATAGAAAGTAATCGGTGTGTGTGCGTGTGTAATTAGTGTATGAATGTACTGTGTAGTTTTGTCAGAAGGGAGGGAAGAGAACAGATCGACCGCGATGATCGTGCGATCATGTACGTACAGTTTACTCTGAATATAAGCCCCAAGATATATATCCTGTCCCATTTACCCGAACAAAGTGAAATATTATGGCAAGAAAAACTGAAAAACAGTAAATTCAAATGTAAACTCGAATAAGAAATATCGAGAAAATGTCATAATCAATCAATCAAAACGATGGGCTGCAAATGAAGTAATAGAAAGGAGAAGAACATATGCAAACAACAGCAACAAAAATGTGTCATTAAATGAAATTGGCAGAGA] consensusID : consensus_829#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 683 fasta sequence [TCAGTACAATATGAATTATTAAGCAGACACACACAGAATAGTTGTTTTAATTGTGGTTATTTCGCGCTTTTGGGGGGTTTCGTTTTCTAAATTATTGGCTTGAGATGCTGAGAGCTGGTGGGTGGTGGAGAAGGTCTCAGCTTTGTTTTAAAATTAAGCGAGGGGGGTTTGTCACAAATCAATGTTTTTTGGCTATATTAGTTAACGTGTTTTTTGTTGTAATGTGTTCCTTATGAAAAGCAAAACTGTACACTCACACACACACAATATCGCGTTTCTCTTTATGCATGAAATCAGGCCCTGGTTTCATGCGTTCTAAATTATTTGTCAAAAGGCTGTAAAGGCCCTTCGAGGAGGAGGAGTATGTACGAGGATGCGCTTGAGGAGGAAAGCGGTTAATTTTCGCCTGTAGAAAGGTCTGTGATGGTGGTGATAATGAAAAGCATTATATAGAAAGTAATCGGTGTGTGTGCGTGTTTGTAATTAGTGTATGAATGTACAGCTGTTTAGTTTTGTCAGAAGAGGGGGATGAGAACAGATCGACCGCGATGATCGTGCGATCATGTACTACAGTTTACTCTGAATATAAGCCCCAAGATATATATCCTGTCCTATTTACCCGAACAAAGTGAAATATTATGGCAAGAAAAACTGAAAAACAGTACATTCAAATGTAAACTCGA] [+] EMBL BX611194 [TCAGTACAATATGAATTATTAAGCAGACACACACAGAATAGTTGTTTTAATTGTGGTTATTTCGCGCTTTTGGGGGGTTTCGTTTTCTAAATTATTGGCTTGAGATGCTGAGAGCTGGTGGGTGGTGGAGAAGGTCTCAGCTTTGTTTTAAAATTAAGCGAGGGGGGTTTGTCACAAATCAATGTTTTTTGGCTATATTAGTTAACGTGTTTTTTGTTGTAATGTGTTCCTTATGAAAAGCAAAACTGTACACTCACACACACACAATATCGCGTTTCTCTTTATGCATGAAATCAGGCCCTGGTTTCATGCGTTCTAAATTATTTGTCAAAAGGCTGTAAAGGCCCTTCGAGGAGGAGGAGTATGTACGAGGATGCGCTTGAGGAGGAAAGCGGTTAATTTTCGCCTGTAGAAAGGTCTGTGATGGTGGTGATAATGAAAAGCATTATATAGAAAGTAATCGGTGTGTGTGCGTGTTTGTAATTAGTGTATGAATGTACAGCTGTTTAGTTTTGTCAGAAGAGGGGGATGAGAACAGATCGACCGCGATGATCGTGCGATCATGTACTACAGTTTACTCTGAATATAAGCCCCAAGATATATATCCTGTCCTATTTACCCGAACAAAGTGAAATATTATGGCAAGAAAAACTGAAAAACAGTACATTCAAATGTAAACTCGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_829#0 ------------------------------------------------------------ consensus_829#1 TCAGTACAATATGAATTATTAAGCAGACACACACAGAATAGTTGTTTTAATTGTGGTTAT 60 consensus_829#0 ------------------------------------------------------------ consensus_829#1 TTCGCGCTTTTGGGGGGTTTCGTTTTCTAAATTATTGGCTTGAGATGCTGAGAGCTGGTG 120 consensus_829#0 --CCGCCCACGCGTCCGCAGCTTTGTTTTAAAATTAAGCGAGGGGGGTTTTGTCACAAAT 58 consensus_829#1 GGTGGTGGAGAAGGTCTCAGCTTTGTTTTAAAATTAAGCGAGGGGGGTTT-GTCACAAAT 179 * * * * ********************************* ********* consensus_829#0 CAATGTTTTTTGGCTATATTAGTTAACGTGTTTTTTGTTGTAATGTGTTCCTTATGAAAA 118 consensus_829#1 CAATGTTTTTTGGCTATATTAGTTAACGTGTTTTTTGTTGTAATGTGTTCCTTATGAAAA 239 ************************************************************ consensus_829#0 TCAAAACTGCACACACACACACACACAATATCGTGTTTCTCTTTATGCATGAAATCAGGC 178 consensus_829#1 GCAAAACTGTACACTCACACACACACAATATCGCGTTTCTCTTTATGCATGAAATCAGGC 299 ******** **** ****************** ************************** consensus_829#0 CCTGGTTTCATGCGTTCTAAATTATTTGTCAAAAGGCTGTAAAGGCCCGAGGCAGGAGGA 238 consensus_829#1 CCTGGTTTCATGCGTTCTAAATTATTTGTCAAAAGGCTGTAAAGGCCC----TTCGAGGA 355 ************************************************ ***** consensus_829#0 GGAGGAGTATGTACGAGGATGCGCTTGAGGAGGAAAGCGGTTAATTTTCGCCTGTAGAAA 298 consensus_829#1 GGAGGAGTATGTACGAGGATGCGCTTGAGGAGGAAAGCGGTTAATTTTCGCCTGTAGAAA 415 ************************************************************ consensus_829#0 GGTCTGTGATGGTGGTGATAATGAAAAGCATTATATAGAAAGTAATCGGTGTGTGTGCGT 358 consensus_829#1 GGTCTGTGATGGTGGTGATAATGAAAAGCATTATATAGAAAGTAATCGGTGTGTGTGCGT 475 ************************************************************ consensus_829#0 GT--GTAATTAGTGTATGAATGTAC---TGTGTAGTTTTGTCAGAAGGGAGGGAAGAGAA 413 consensus_829#1 GTTTGTAATTAGTGTATGAATGTACAGCTGTTTAGTTTTGTCAGAAGAGGGGGATGAGAA 535 ** ********************* *** *************** * **** ***** consensus_829#0 CAGATCGACCGCGATGATCGTGCGATCATGTACGTACAGTTTACTCTGAATATAAGCCCC 473 consensus_829#1 CAGATCGACCGCGATGATCGTGCGATCATGTAC-TACAGTTTACTCTGAATATAAGCCCC 594 ********************************* ************************** consensus_829#0 AAGATATATATCCTGTCCCATTTACCCGAACAAAGTGAAATATTATGGCAAGAAAAACTG 533 consensus_829#1 AAGATATATATCCTGTCCTATTTACCCGAACAAAGTGAAATATTATGGCAAGAAAAACTG 654 ****************** ***************************************** consensus_829#0 AAAAACAGTAAATTCAAATGTAAACTCGAATAAGAAATATCGAGAAAATGTCATAATCAA 593 consensus_829#1 AAAAACAGTACATTCAAATGTAAACTCGA------------------------------- 683 ********** ****************** consensus_829#0 TCAATCAAAACGATGGGCTGCAAATGAAGTAATAGAAAGGAGAAGAACATATGCAAACAA 653 consensus_829#1 ------------------------------------------------------------ consensus_829#0 CAGCAACAAAAATGTGTCATTAAATGAAATTGGCAGAGA 692 consensus_829#1 --------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||