cluster # 83

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Anopheles gambiae
cluster # 83 cluster # 83 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_83#0 length = 549 sequences # 1

consensus_83#1 length = 548 sequences # 1

consensusID : consensus_83#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 549
fasta sequence

                              [CCGCCCACGCGTCCGCATCGGGGTAGCAAACGTTTGCAATGTTGTTTTGAAGAAAGCAAAAAAAAGGTGACCCATTGAAACAGGTTAGTGAGTTTAGAACGAGGGAACGTTTTCGGTCCCCGCCCCACAAAAATGGGTCCGCATTGTATTAATTACCGCACCCCGCATTGGGTGGACTTTTGCATTGCTCCAAGCGGTTTGTTTGCCGGGTGCGCTTTCCACGCACGCCCCTCCAACAGCCGCCCCGTTGTACTGAAGCGCTCAGCTACGATGTTATAAACTGTGTCTTTGTTTTGATTGTATACTACACAGTAAGCCATGGCTCTTCGGTCGTCAGACTCTAAATGCCGCTCAGTGTCCAGTGCTCAGTGTGCGTGCGTGCATGTATGTGTGTGTGCGTATTTACTCGATGTGTTTAATAAGCAGTGAGTCGAAGGACAAACTTAGAGATGTATGCAAACACATATACACATTACCACTACACACCACTAAGCAGGAATGTGCTGGACCGTTTCTCCGGCCCAGCCTGTTTTGTTTAGTGGGTTGAAT]

[+] EMBL BM577575             [CCGCCCACGCGTCCGCATCGGGGTAGCAAACGTTTGCAATGTTGTTTTGAAGAAAGCAAAAAAAAGGTGACCCATTGAAACAGGTTAGTGAGTTTAGAACGAGGGAACGTTTTCGGTCCCCGCCCCACAAAAATGGGTCCGCATTGTATTAATTACCGCACCCCGCATTGGGTGGACTTTTGCATTGCTCCAAGCGGTTTGTTTGCCGGGTGCGCTTTCCACGCACGCCCCTCCAACAGCCGCCCCGTTGTACTGAAGCGCTCAGCTACGATGTTATAAACTGTGTCTTTGTTTTGATTGTATACTACACAGTAAGCCATGGCTCTTCGGTCGTCAGACTCTAAATGCCGCTCAGTGTCCAGTGCTCAGTGTGCGTGCGTGCATGTATGTGTGTGTGCGTATTTACTCGATGTGTTTAATAAGCAGTGAGTCGAAGGACAAACTTAGAGATGTATGCAAACACATATACACATTACCACTACACACCACTAAGCAGGAATGTGCTGGACCGTTTCTCCGGCCCAGCCTGTTTTGTTTAGTGGGTTGAAT]




>consensus_83#0
CCGCCCACGCGTCCGCATCGGGGTAGCAAACGTTTGCAATGTTGTTTTGAAGAAAGCAAA
AAAAAGGTGACCCATTGAAACAGGTTAGTGAGTTTAGAACGAGGGAACGTTTTCGGTCCC
CGCCCCACAAAAATGGGTCCGCATTGTATTAATTACCGCACCCCGCATTGGGTGGACTTT
TGCATTGCTCCAAGCGGTTTGTTTGCCGGGTGCGCTTTCCACGCACGCCCCTCCAACAGC
CGCCCCGTTGTACTGAAGCGCTCAGCTACGATGTTATAAACTGTGTCTTTGTTTTGATTG
TATACTACACAGTAAGCCATGGCTCTTCGGTCGTCAGACTCTAAATGCCGCTCAGTGTCC
AGTGCTCAGTGTGCGTGCGTGCATGTATGTGTGTGTGCGTATTTACTCGATGTGTTTAAT
AAGCAGTGAGTCGAAGGACAAACTTAGAGATGTATGCAAACACATATACACATTACCACT
ACACACCACTAAGCAGGAATGTGCTGGACCGTTTCTCCGGCCCAGCCTGTTTTGTTTAGT
GGGTTGAAT

consensusID : consensus_83#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 548
fasta sequence

                              [CCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGGTGGTTTTCAGCTGTCGAAATTAGGAGTCGAAAATAATTGCGCGGAGCTGATTCGCGTGTGCGATGATAGTATTGTTGATTATATTTGATTAAAAAAAAAGGGTTAAGCCAAAAAGCGTGCAAGGGGGGCATCGGGGTAGCAAACGTTTGCAATGTTGTTTTGAAGAAAGCAAAAAAAAAGGTGACCCATTGAAACAGGTTAGTGAGTTTAGAACGAGGGAACGTTTTCGGTCCCCGCCCCACAAAAATGGGTCCGTATTGTATTAATTACCGCACCCCGCCGGGTGGACTTTAGCATTGCTCCAAGCGGTTTGTTTGCCGGGTGCGCTTTCCACGCACGCCCCTCCAACAGCCGCCCCGTTGTACTGAAGCGCTCAGCTACGATGTTATAAACTGTGTCTTTGTTTTGATTGCATACTACACAGTAAGCCATGGCTCTTCGGTCGTCAGACTCTAAATGCCGCTCAGTGTCCAGTGCTCAGTGTGCGTGCGTGCATGTGTGTGTGTTT]

[+] EMBL BM598322             [CCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGGTGGTTTTCAGCTGTCGAAATTAGGAGTCGAAAATAATTGCGCGGAGCTGATTCGCGTGTGCGATGATAGTATTGTTGATTATATTTGATTAAAAAAAAAGGGTTAAGCCAAAAAGCGTGCAAGGGGGGCATCGGGGTAGCAAACGTTTGCAATGTTGTTTTGAAGAAAGCAAAAAAAAAGGTGACCCATTGAAACAGGTTAGTGAGTTTAGAACGAGGGAACGTTTTCGGTCCCCGCCCCACAAAAATGGGTCCGTATTGTATTAATTACCGCACCCCGCCGGGTGGACTTTAGCATTGCTCCAAGCGGTTTGTTTGCCGGGTGCGCTTTCCACGCACGCCCCTCCAACAGCCGCCCCGTTGTACTGAAGCGCTCAGCTACGATGTTATAAACTGTGTCTTTGTTTTGATTGCATACTACACAGTAAGCCATGGCTCTTCGGTCGTCAGACTCTAAATGCCGCTCAGTGTCCAGTGCTCAGTGTGCGTGCGTGCATGTGTGTGTGTTT]




>consensus_83#1
CCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGGTGGTTTTCAGCTGTCGAAAT
TAGGAGTCGAAAATAATTGCGCGGAGCTGATTCGCGTGTGCGATGATAGTATTGTTGATT
ATATTTGATTAAAAAAAAAGGGTTAAGCCAAAAAGCGTGCAAGGGGGGCATCGGGGTAGC
AAACGTTTGCAATGTTGTTTTGAAGAAAGCAAAAAAAAAGGTGACCCATTGAAACAGGTT
AGTGAGTTTAGAACGAGGGAACGTTTTCGGTCCCCGCCCCACAAAAATGGGTCCGTATTG
TATTAATTACCGCACCCCGCCGGGTGGACTTTAGCATTGCTCCAAGCGGTTTGTTTGCCG
GGTGCGCTTTCCACGCACGCCCCTCCAACAGCCGCCCCGTTGTACTGAAGCGCTCAGCTA
CGATGTTATAAACTGTGTCTTTGTTTTGATTGCATACTACACAGTAAGCCATGGCTCTTC
GGTCGTCAGACTCTAAATGCCGCTCAGTGTCCAGTGCTCAGTGTGCGTGCGTGCATGTGT
GTGTGTTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_83#0      ------------------------------------------------------------
consensus_83#1      CCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGGTGGTTTTCAGCTGTCGAAAT 60
                                                                                

consensus_83#0      ------------------------------------------------------------
consensus_83#1      TAGGAGTCGAAAATAATTGCGCGGAGCTGATTCGCGTGTGCGATGATAGTATTGTTGATT 120
                                                                                

consensus_83#0      ----------------------------------CCGCCCACGCGTCCGCATCGGGGTAG 26
consensus_83#1      ATATTTGATTAAAAAAAAAGGGTTAAGCCAAAAAGCGTGCAAGGGGG-GCATCGGGGTAG 179
                                                       **  ** * *   ************

consensus_83#0      CAAACGTTTGCAATGTTGTTTTGAAGAAAGCAAAAAAAA-GGTGACCCATTGAAACAGGT 85
consensus_83#1      CAAACGTTTGCAATGTTGTTTTGAAGAAAGCAAAAAAAAAGGTGACCCATTGAAACAGGT 239
                    *************************************** ********************

consensus_83#0      TAGTGAGTTTAGAACGAGGGAACGTTTTCGGTCCCCGCCCCACAAAAATGGGTCCGCATT 145
consensus_83#1      TAGTGAGTTTAGAACGAGGGAACGTTTTCGGTCCCCGCCCCACAAAAATGGGTCCGTATT 299
                    ******************************************************** ***

consensus_83#0      GTATTAATTACCGCACCCCGCATTGGGTGGACTTTTGCATTGCTCCAAGCGGTTTGTTTG 205
consensus_83#1      GTATTAATTACCGCACCCCGC--CGGGTGGACTTTAGCATTGCTCCAAGCGGTTTGTTTG 357
                    *********************   *********** ************************

consensus_83#0      CCGGGTGCGCTTTCCACGCACGCCCCTCCAACAGCCGCCCCGTTGTACTGAAGCGCTCAG 265
consensus_83#1      CCGGGTGCGCTTTCCACGCACGCCCCTCCAACAGCCGCCCCGTTGTACTGAAGCGCTCAG 417
                    ************************************************************

consensus_83#0      CTACGATGTTATAAACTGTGTCTTTGTTTTGATTGTATACTACACAGTAAGCCATGGCTC 325
consensus_83#1      CTACGATGTTATAAACTGTGTCTTTGTTTTGATTGCATACTACACAGTAAGCCATGGCTC 477
                    *********************************** ************************

consensus_83#0      TTCGGTCGTCAGACTCTAAATGCCGCTCAGTGTCCAGTGCTCAGTGTGCGTGCGTGCATG 385
consensus_83#1      TTCGGTCGTCAGACTCTAAATGCCGCTCAGTGTCCAGTGCTCAGTGTGCGTGCGTGCATG 537
                    ************************************************************

consensus_83#0      TATGTGTGTGTGCGTATTTACTCGATGTGTTTAATAAGCAGTGAGTCGAAGGACAAACTT 445
consensus_83#1      TGTGTGTGTTT------------------------------------------------- 548
                    * ******* *                                                 

consensus_83#0      AGAGATGTATGCAAACACATATACACATTACCACTACACACCACTAAGCAGGAATGTGCT 505
consensus_83#1      ------------------------------------------------------------
                                                                                

consensus_83#0      GGACCGTTTCTCCGGCCCAGCCTGTTTTGTTTAGTGGGTTGAAT 549
consensus_83#1      --------------------------------------------