cluster # 833

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Anopheles gambiae
cluster # 833 cluster # 833 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_833#0 length = 653 sequences # 1

consensus_833#1 length = 487 sequences # 1

consensusID : consensus_833#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 653
fasta sequence

                              [CCGCCTGCGGCACCTCCCTGAAGAACCAGGGCTATTTCAATCTGAACGACAAGCTGTACTGCGACATCCATGCGCGGCTGGCGGCGCTTAACAGCCCGCCGCCCGGCACCAACGGCATGGTTCCGGTCGCTGTCACGAAACCCTCCCTATACTAGCATTCCTAGCAAAACCGTTCTAGAAAGCAACTAGAGCACATCCTTACAAAATAGGTAGCTGTGCTGTGTGTTTAGGCTAGCTGGTTTGTTGATTAGTTTGTAAAAAGCTTTTAGTAGTACCCTTAAATGAGAACGATTCGAGAGTAAGACGATGCAAAACGATGATTCTGAGAGAAGAGAGGAGTGTAGCGTGTTGGACAAGTAGTTTGCCTTAGAAACGGGTGGTTTTCCACAGTTAGTAAAGAGAAGGGACACAAGACCGGCGTCCAGGCCATCTCTGCTGCTCTCAACGCTCATGCCAACTTGAATGGCCGCGCGCAGTCGCCGTACGGCAGTAATGTGAACCAGAACAACATTACACCGAAGCCGTTCGGCGCCCCGCTCCCGGTGAGCCCGCTGGCCCAGGTCCAGCCGCCGGCCTCGTACCCACCGGTGGCTGGTAGCGTCCCGACGCCCTTCTCGGCCGCCCTTGTCGGCGCCCCGCCGGCCCAGCCCGCT]

[+] EMBL BM581290             [CCGCCTGCGGCACCTCCCTGAAGAACCAGGGCTATTTCAATCTGAACGACAAGCTGTACTGCGACATCCATGCGCGGCTGGCGGCGCTTAACAGCCCGCCGCCCGGCACCAACGGCATGGTTCCGGTCGCTGTCACGAAACCCTCCCTATACTAGCATTCCTAGCAAAACCGTTCTAGAAAGCAACTAGAGCACATCCTTACAAAATAGGTAGCTGTGCTGTGTGTTTAGGCTAGCTGGTTTGTTGATTAGTTTGTAAAAAGCTTTTAGTAGTACCCTTAAATGAGAACGATTCGAGAGTAAGACGATGCAAAACGATGATTCTGAGAGAAGAGAGGAGTGTAGCGTGTTGGACAAGTAGTTTGCCTTAGAAACGGGTGGTTTTCCACAGTTAGTAAAGAGAAGGGACACAAGACCGGCGTCCAGGCCATCTCTGCTGCTCTCAACGCTCATGCCAACTTGAATGGCCGCGCGCAGTCGCCGTACGGCAGTAATGTGAACCAGAACAACATTACACCGAAGCCGTTCGGCGCCCCGCTCCCGGTGAGCCCGCTGGCCCAGGTCCAGCCGCCGGCCTCGTACCCACCGGTGGCTGGTAGCGTCCCGACGCCCTTCTCGGCCGCCCTTGTCGGCGCCCCGCCGGCCCAGCCCGCT]




>consensus_833#0
CCGCCTGCGGCACCTCCCTGAAGAACCAGGGCTATTTCAATCTGAACGACAAGCTGTACT
GCGACATCCATGCGCGGCTGGCGGCGCTTAACAGCCCGCCGCCCGGCACCAACGGCATGG
TTCCGGTCGCTGTCACGAAACCCTCCCTATACTAGCATTCCTAGCAAAACCGTTCTAGAA
AGCAACTAGAGCACATCCTTACAAAATAGGTAGCTGTGCTGTGTGTTTAGGCTAGCTGGT
TTGTTGATTAGTTTGTAAAAAGCTTTTAGTAGTACCCTTAAATGAGAACGATTCGAGAGT
AAGACGATGCAAAACGATGATTCTGAGAGAAGAGAGGAGTGTAGCGTGTTGGACAAGTAG
TTTGCCTTAGAAACGGGTGGTTTTCCACAGTTAGTAAAGAGAAGGGACACAAGACCGGCG
TCCAGGCCATCTCTGCTGCTCTCAACGCTCATGCCAACTTGAATGGCCGCGCGCAGTCGC
CGTACGGCAGTAATGTGAACCAGAACAACATTACACCGAAGCCGTTCGGCGCCCCGCTCC
CGGTGAGCCCGCTGGCCCAGGTCCAGCCGCCGGCCTCGTACCCACCGGTGGCTGGTAGCG
TCCCGACGCCCTTCTCGGCCGCCCTTGTCGGCGCCCCGCCGGCCCAGCCCGCT

consensusID : consensus_833#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 487
fasta sequence

                              [CCGCGGACGCGTGGGCGGACGCGTGGGAGCAGCGAGAACGAGCTGATCGATCGTAGCCACAGCAGCAACAGCAACGGTAGCAACGCCAGCGAGCTATCCGGTAACGCGTATCCCGTCTGCCCAGCGTCTCCGCCCCTGCCGCCCCCGCCGCCACCACTAACGATGGAGGAGTGCACACTCCAGGAGCCCGGACCGGAAGTGCCGCCAGCCCCGCCACAGACCGACGCGAGCGCACCGCTCGTGTTTGGGGCAAATGGGTTGGCCACCCCGGCCGCGACCGCCGATAGTGAGCAGACCGATGGTACGGTTACGCAAAACGACTACGGCTTTTACTACCAGACGATGGGAGGACGCGTCATTCGCAGCGTACTTCCGCCGGGCAAGAACTCCACCTACAAGGTGAACCAGAACAACATTACGCCGAAGCCGTTCGGCGCCCCGCTCCCGGTGAGCCCGCTGGCCCAGGTCCAGCCGCCGGCCTCGTACC]

[+] EMBL BM625837             [CCGCGGACGCGTGGGCGGACGCGTGGGAGCAGCGAGAACGAGCTGATCGATCGTAGCCACAGCAGCAACAGCAACGGTAGCAACGCCAGCGAGCTATCCGGTAACGCGTATCCCGTCTGCCCAGCGTCTCCGCCCCTGCCGCCCCCGCCGCCACCACTAACGATGGAGGAGTGCACACTCCAGGAGCCCGGACCGGAAGTGCCGCCAGCCCCGCCACAGACCGACGCGAGCGCACCGCTCGTGTTTGGGGCAAATGGGTTGGCCACCCCGGCCGCGACCGCCGATAGTGAGCAGACCGATGGTACGGTTACGCAAAACGACTACGGCTTTTACTACCAGACGATGGGAGGACGCGTCATTCGCAGCGTACTTCCGCCGGGCAAGAACTCCACCTACAAGGTGAACCAGAACAACATTACGCCGAAGCCGTTCGGCGCCCCGCTCCCGGTGAGCCCGCTGGCCCAGGTCCAGCCGCCGGCCTCGTACC]




>consensus_833#1
CCGCGGACGCGTGGGCGGACGCGTGGGAGCAGCGAGAACGAGCTGATCGATCGTAGCCAC
AGCAGCAACAGCAACGGTAGCAACGCCAGCGAGCTATCCGGTAACGCGTATCCCGTCTGC
CCAGCGTCTCCGCCCCTGCCGCCCCCGCCGCCACCACTAACGATGGAGGAGTGCACACTC
CAGGAGCCCGGACCGGAAGTGCCGCCAGCCCCGCCACAGACCGACGCGAGCGCACCGCTC
GTGTTTGGGGCAAATGGGTTGGCCACCCCGGCCGCGACCGCCGATAGTGAGCAGACCGAT
GGTACGGTTACGCAAAACGACTACGGCTTTTACTACCAGACGATGGGAGGACGCGTCATT
CGCAGCGTACTTCCGCCGGGCAAGAACTCCACCTACAAGGTGAACCAGAACAACATTACG
CCGAAGCCGTTCGGCGCCCCGCTCCCGGTGAGCCCGCTGGCCCAGGTCCAGCCGCCGGCC
TCGTACC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_833#0      CCGCCTGCGGCACCTCCCTGAAGAACCAGGGCTATTTCAATCTGAACGACAAGCTGTACT 60
consensus_833#1      ------------------------------------------------------------
                                                                                 

consensus_833#0      GCGACATCCATGCGCGGCTGGCGGCGCTTAACAGCCCGCCGCCCGGCACCAACGGCATGG 120
consensus_833#1      -----------------CCGCGGACGC---GTGGGCGGACGCGTGGGAGCAGCGAGAACG 40
                                      * *  * ***      * * * ***  ** * ** **  *  *

consensus_833#0      TTCCGGTCGCTGTCACGAAACCCTCCCTATACTAGCATTCCTAGCAAAACCGTTCTAGAA 180
consensus_833#1      AGCTGATCGAT----CGTAGCCACAGCAGCAACAGCAACGGTAGCAACGCCAG-CGAGCT 95
                       * * *** *    ** * **    *   *  ****    ******  **   * **  

consensus_833#0      AGCAACTAGAGCACATCCTTACAAAATAGGTAGCTGTGCTGTGTGTTTAGGCTAGCTGGT 240
consensus_833#1      ATCCGGTAACGCGTATCCC------------GTCTGCCCAGCGTCTCCGCCCCTGCCGCC 143
                     * *   **  **  ****               ***  * * ** *     *  ** *  

consensus_833#0      TTGTTGATTAGTTTGTAAAAAGCTTTTAGTAGTACCCTTAAATGAGAACGATTCGAGAGT 300
consensus_833#1      CCCGCCGCCACCAC-TAACGATGGAGGAGT-GCACACTCCAG-GAGCCCGGACCGGAAGT 200
                              *     ***  *      *** * ** **  *  ***  **   **  ***

consensus_833#0      AAGACGATGCAAAACGATGATTCTGAGAGAAGAGAGGAGTGTAGCGTGTTGGACAAGTAG 360
consensus_833#1      GCCGCCAGCCCCGCCACAGA--CCGACGCGAGCGCACCGC-TCGTGTTTGGGGCAAATGG 257
                         * *  *    *   **  * **    ** *    *  * * ** * ** *** * *

consensus_833#0      TTTGCCTTAGAAACGGGTGGTTTTCCACAGTTAGTAAAGAGAAGGGACA--CAAGACCGG 418
consensus_833#1      GTTGGCCACCCCGGCCGCGACCGCCGATAGTGAGCAGACCGATGGTACGGTTACGCAAAA 317
                      *** *          * *     * * *** ** * *  ** ** **    * *     

consensus_833#0      CGTCCA-GGCCATCTCTGCTGCTC--TCAACGCTCATGCCAACTTGAATGGCCGCGCGCA 475
consensus_833#1      CGACTACGGCTTTTACTACCAGACGATGGGAGGACGCGTCATTCGCAGCGTACTTCCGCC 377
                     ** * * ***  *  ** *    *  *    *  *  * **     *  *  *   *** 

consensus_833#0      GTCGCCGTACGGCA---GTAATGTGAACCAGAACAACATTACACCGAAGCCGTTCGGCGC 532
consensus_833#1      GGGCAAGAACTCCACCTACAAGGTGAACCAGAACAACATTACGCCGAAGCCGTTCGGCGC 437
                     *     * **  **     ** ******************** *****************

consensus_833#0      CCCGCTCCCGGTGAGCCCGCTGGCCCAGGTCCAGCCGCCGGCCTCGTACCCACCGGTGGC 592
consensus_833#1      CCCGCTCCCGGTGAGCCCGCTGGCCCAGGTCCAGCCGCCGGCCTCGTACC---------- 487
                     **************************************************          

consensus_833#0      TGGTAGCGTCCCGACGCCCTTCTCGGCCGCCCTTGTCGGCGCCCCGCCGGCCCAGCCCGC 652
consensus_833#1      ------------------------------------------------------------
                                                                                 

consensus_833#0      T 653
consensus_833#1      -