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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8336#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1147 fasta sequence
[ATTTTATTTAACTCTCCTGCCGCACATTCCTTCGCCGCCGGCCAGCACGTAACCCATCGACACCGATCTTCTCCTTCACCTCGTCGATCGTCTGCTCCGCTATCGCCCGCGCCCGCTCACTGCCCTCCTCGATAACGTCGGCCAAATAGCCAACATCCCGCGTGTACCGCTCCATCCGCTCCCGGATCGGCCGCAGATGCTCAATCAACGCTTCCGCCACCAGCAGCTTGTACTGGCCCGTGTTTTTCCCCACCGCCTCCCGGCATATCTCCTCCACCGGTTTGCCACTGACCAGCGAGTGGATCGTGATCAGATTCGACACGCCGGGCCGCTCTTTCGCATCGAACGTAACCTCCGACCGGAAA-TCCGTCACCGACTTCTTCACCTTCTCCAGCACCACGTCGGCCGGGTCGATCAGCATGATGCAGCTCTTCGGGTCC-GGATCCGATTTGGACATCTTTTTTGACGGGT-CGCGCAACGACTTCAGCC-GGCTGCCGTCGTTCACGAGCGTCTCGCAGAACGGGAACGTTCGGCCGTACTT-GTTGTTGAACGCGCGCGCCAACGATTGAGCCAGCTGCAGCTGCTGGATTTGATCCTCCCCGACCGGCACGTGGGTCGCTTTGTACAGCATAATGTCGGCCGCCTGCAGGACCGGGTAGAGGTACAGGCCGAGCGGAATTT-CCTTCAT-GTTGG-CCGACTT-T-TCCTTGTA-CTGGGGAAGATGGGTCAGGCGTGCCATCGTCGTCAGACAGCCCAGAATCCAGGACAGT-TCGGCATGCTGCGGAACGGCCGACTGGAGGAAGAGGGTGGCCCGTGCCGGATCGATACCGCACGCTAGCAGCGTTGCCGTCATTTGCAGCGTGTTGTGACGTAACGTGTCGGGGTCCGGCGGGATGGTCATGGAGTGCAAATCAACAATACAGTAGGTGACGTCCTCTCCGGCTTCCTGCAGCTCCACCCAGCGCTTCACCGCACCGAGATAGTTGCCAATGTGCAGCGCACCGGTCGGCTGCACGCCGGAAAACACCTTCCGTGGCCATGGCGCGGGCTTCGCTTCTGCGGAAAGGAAGCGATTTTGCTGTCGTAGGCTGTTCGTACTCTTCAGCAGAAAGGGTAAAACACGTTTAGCTAACCTCGTGGCGATTCTGCT]
[+] EMBL CNS09ME6 [ATTTTATTTAACTCTCCTGCCGCACATTCCTTCGCCGCCGGCCAGCACGTAACCCATCGACACCGATCTTCTCCTTCACCTCGTCGATCGTCTGCTCCGCTATCGCCCGCGCCCGCTCACTGCCCTCCTCGATAACGTCGGCCAAATAGCCAACATCCCGCGTGTACCGCTCCATCCGCTCCCGGATCGGCCGCAGATGCTCAATCAACGCTTCCGCCACCAGCAGCTTGTACTGGCCCGTGTTTTTCCCCACCGCCTCCCGGCATATCTCCTCCACCGGTTTGCCACTGACCAGCGAGTGGATCGTGATCAGATTCGACACGCCGGGCCGCTCTTTCGCATCGAACGTAACCTCCGACCGGAAACTCCGTCACCGACTTCTTCACCTTCTCCAGCACCACGTCGGCCGGGTCGATCAGCATGATGCAGCTCTTCGGGTCC GGATCCGATTTGGACATCTTTTTTGACGGGT CGCGCAACGACTTCAGCC GGCTGCCGTCGTTCACGAGCGTCTCGCAGAACGGGAACGTTCGGCCGTACTT GTT ]
[+] EMBL CNS09BJW [ CACATTCCTTCGCCGCCGGCCAGCACGTAATTTTTCGACACCGATCTTCTCCTTCACCTCGTCGATCGTCTGCTCCGCTATCGCCCGCGCCCGCTCACTGCCCTCCTCGATAACGTCGGCCAAATAGCCAACATCCCGCGTGTACCGCTCCATCCGCTCCCGGATCGGCCGCAGATGCTCAATCAACGCTTCCGCCACCAGCAGCTTGTACTGGCCCGTGTTTTTCCCCACCGCCTCCCGGCATATCTCCTCCACCGGTTTGCCACTGACCAGCGAGTGGATCGTGACCAGATTCGACACGCCGGGCCGCTCTTTCGCATCGAACGTAACCTCCGACCGGAAA TCCGTCACCGACTTCTTCACCTTCTCCAGCACCACGTCGGCCGGGTCGATCAGCATGATGCAGCTCTTCGGGTCC GGATCCGATTTGGACATCTTTTTTGACGGGTGCGCGCAACGACTTCAGCC GGCTGCCGTCGTTCACGAGCGTCTCGCAGAACGGGAACGTTCGGCCGTACTT GTTGTTGAACGCGCGCGCCAACGATTGAGCCAGCTGCAGCTGCTGGATTTGATCCTCCCCGACCGGCACGTGGGTCGCTTTGTACAGCATAATGTCGGCCGCCTGCAGGACCGGGTAGAGGTACAGGCCGAGCGGAATTT CCTTCAT GTTGG CCGACTT T TCCTTGTA CTGGGGAAGATGGGTCAGGCGTG CATTGTCGTCAGA AGCCCAGAATCCAGGACAGT TCG ]
[-] EMBL CNS08N5N [ TATCTCCTCCACCGGTTTGCCACTGACCAGCGAGTGGATCGTGATCAGATTCGACACGCCGGGCCGCTCTTTCGCATCGAACGTAACCTCCGACCGGAAA TCCGTCACCGACTTCTTCACCTTCTCCAGCACCACGTCGGCCGGGTCGATCAGCATGATGCAGCTCTTCGGGTCC GGATCCGATTTGGACATTTTTTTCGACGGAT CGCGCAACGACTTCAGTC GGCTGCCGTCGTTCACGAGCGTCTCGCAGAACGGGAACGTTCGGCCGTACTT GTTGTTGAACGCGCGCGCCAACGATTGTGCCAGCTGCTGCTGCTGGATTTGATCCTCCCCGACCGGCACGTGGGTTGCTTTGTACAGCATAATGTCGGCCGCCTGCAGGACCGGGTAGAGGAACAGGCCGAGCGGAATTT CCTTCAT GTTGG CCGACTT T TCCTTGTA CTGGGGAAGGTGGGTAAGGCGTGCCATCGTCGTGAGACAGCCCAAAATCCAGGACAGT TCGGCATGCTGCGGAACGGCCGACTGGAGGAAGAGGGTGG CCGTGCCGGATCGATACCGCACGCTAGCAGCGTTGCCGTCATTTGCAACGTGTTGTGACGTAACGTGTCGGGGTCCGGCGGGATGGTCATGTAGTTCAAATCAACAATACAGTAGTTGACGTCCTCTCCGTCTTCCTGCAGCTCCACCCAGCTCTTCACCG ]
[-] EMBL BX620696 [ CACCACGTCGGCCGGGTCGATCAGCATGATGCAGCTNTTCGGGTCCGGGATCCGATTTGGACATCTTTTTCGACGGGT CGCGCAACGACTTCAGCCGGGCTGCCGTCGTTCACGAGCGTCTCGCAGAACGGGAACGTTCGGCCGTACTTNGTTGTTGAACGCGCGCGCCAGTGATTGGGCCAGCTGCAGCTGCTGGATTTGATCCTCCCCGACCGGCACGTGGGTCGCTTTGTACAGCATAATGTCGGCCGCCTGCAGGACCGGGTAGAGGTACAGGCCGAGCGGAATTT CCTTCAT GTTGG CCGACTT T TCCTTGTA CTGGGGAAGATGGGTCAGGCGTGCCATCGTCGTCAGACAGCCCAGAATCCAGGACAGT TCGGCATGCTGCGGAACGGCCGACTGGAGGAAGAGGGTGGCCCGTGCCGGATCGATACCGCACGCTAGCAGCGTTGCCGTCATTTGCAGCGTGTTATGACGTAACGTGTCGGGGTCCGGCGGGATGGTCATGGAGTGCAAATCAACAATACAGTAGGTGACGTCCTCACCGGCTTCCTGCAGCTCCACCCAGCGCTTCACCGCACCGAGATAGTTGCCAATGTGCAGCGCACCGGTCGGCTGCACGCCGGAAAACACCTTCCGTGGCCATGGCGCGGGCTTCGCTTCTGCGGAAAGGAAGCGATTTTGCTGTCGTAGGC ]
[-] EMBL CNS09BJV [ CACCACGTCGGCCGGGTCGATCAGCATGATGCAGCTCTTCGGGTCC GGATCCGATTTGGACATCTTTTTTGACGGGT CGCGCAACGACTTCAGCC GGCTGCCGTCGTTCACGAGCGTCTCGCAGAACGGGAACGTTCGGCCGTACTT GTTGTTGAACGCGCGCGCCAACGATTGAGCCAGCTGCAGCTGCTGGATTTGATCCTCCCCGACCGGCACGTGGGTCGCTTTGTACAGCATAATGTCGGCCGCCTGCAGGACCGGGTAGAGGTACAGGCCGAGCGGAATTT CCTTCAT GTTGG CCGACTT T TCCTTGTA CTGGGGAAGATGGGTCAGGCGTGCCATTGTCGTCAGACAGCCCAGAATCCAGGACAGT TCGGCATGCTGCGGGACGGCCGACTGGAGGAAGAGGGTGG CCGTGCCGGATCGATACCACACGCCAGCAGCGTTGCCGTCATTTGCAGCGTGTTGTGACGTAACGTGTCGGGGTCCGGCGGGATGGTCATGGAGTGCAAATCAACAATACAGTAGGTGACGTCCTCTCCGGCTTCCTGCAGCTCCACCCAGCGCTTCACCGCACCGAGATAGTTGCCAATGTGCAGCGCACCGGTCGGCTGCACGCCGGAAAACACCTTCCGTGGCCATGGGGCGaaaaaa ]
[-] EMBL BX623873 [ CCACGTCGGCCGGGTCGATCAGCATGATGCAGCTCTTCGGGTCC GGATCCGATTTGGACATCTTTTTCGACGGGT CGCGCAACGACTTCAGCC GGCTGCCGTCGTTCACGAGCGTCTCGCAGAACGGGAACGTTCGGCCGTACTT GTTGTTGAACGCGCGCGCCAGTGATTGGGCCAGCTGCAGCTGCTGGATTTGATCCTCCCCGACCGGCACGTGGGTCGCTTTGTACAGCATAATGTCGGCCGCCTGCAGGACCGGGTAGAGGTACAGGCCGAGCGGAATTT CCTTCAT GTTGG CCGACTT T TCCTTGTA CTGGGGAAGATGGGTCAGGCGTGCCATCGTCGTCAGACAGCCCAGAATCCAGGACAGT TCGGCATGCTGCGGAACGGCCGACTGGAGGAAGAGGGTGGCCCGTGCCGGATCGATACCGCACGCTAGCAGCGTTGCCGTCATTTGCAGCGTGTTATGACGTAACGTGTCGGGGTCCGGCGGGATGGTCATGGAGTGCAAATCAACAATACAGTAGGTGACGTCCTCACCGGCTTCCTGCAGCTCCACCCAGCGCTTCACCGCACCGAGATAGTTGCCAATGTGCAGCGCACCGGTCGGCTGCACGCCGGAAAACACCTTCCGTGGCCATGGCGCGGGCTTCGCTTCTGCGGAAAGGAAGCGATTTTGCTGTCG ]
[-] EMBL BX616194 [ ATGTCGGCCGCCTGCAGGACCGGGTAGAGGTACAGGCCGAGCGGAATTT CCTTCAT GTTGG CCGACTT T TCCTTGTA CTGGGGAAGATGGGTCAGGCGTGCCATTGTCGTCAGACAGCCCAGAATCCAGGACAGT TCGGCATGCTGCGGGACGGCCGACTGGAGGAAGAGGGTGGCCCGTGCCGGATCGATACCACACGCCAGCAGCGTTGCCGTCATTTGCAGCGTGTTGTGACGTAACGTGTCGGGGTCCGGCGGGATGGTCATGGAGTGCAAATCAACAATACAGTAGGTGACGTCCTCTCCGGCTTCCTGCAGCTCCACCCAGCGCTTCACCGCACCGAGATAGTTGCCAATGTGCAGCGCACCGGTCGGCTGCACGCCGGAAAACACCTTCCGTGGCCATGGGGCGGGCTTCGCTTCTGAGGAAAGGAAGCGATTTTGCTGTCGTAGGCTGTTCGTACT ]
[-] EMBL AL696758 [ GAATTTGCCTTCATGGTTGGCCCGACTTGTGTCCTTGTACCTGGGGAAGACTGGTCAGGCGTGCCATCGTCGTCAGACAGCCCAGAATCCAGGACAGTGTCGGCATGCTGCGGAACGGCCGACTGGAGGAAGAGGGTGGCCCGTGCCGGATCGATACCGCACGCTAGCAGCGTTGCCGTCATTTGCAGCGTGTTATGACGTAACGTGTCGGGGTCCGGCGGGATGGTCATGGAGTGCAAATCAACAATACAGTAGGTGACGTCCTCACCGGCTTCCTGCAGCTCCACCCAGCGCTTCACCGCACCGAGATAGTTGCCAATGTGCAGCGCACCGGTCGGCTGCACGCCGGAAAACACCTTCCGTGGCCATGGCGCGGGCTTCGCTTCTGCGGAAAGGAAGCGATTTTGCTGTCGTA GCCGTTTGTATTCTTCAGCAGAAAGGGTAAAACACGTTTAGCTAACCTCGTGGCGATTCTGCT]
[-] EMBL CNS09ME5 [ aCACGCCAGCAGCGTTGCCGTCATTTGCAGCGTGTTGTGACGTAACGTGTCGGGGTCCGGCGGGATGGTCATGGAGTGCAAATCAACAATACAGTAGGTGACGTCCTCTCCGGCTTCCTGCAGCTCCACCCAGCGCTTCACCGCACCGAGATAGTTGCCAATGTGCAGCGCACCGGTCGGCTGCACGCCGGAAAACACCTTCCGT ]
consensusID : consensus_8336#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 571 fasta sequence
[GGCGTTCAGGGACCCAAGGCCTCGCCAAAGGAAAAATTGCGCCCAAAGGGAACCCAAAGGGTTNTTTCCGGGGGCCAAATTTGCGCGCCTTCAGCGCCCGGGGAANACCCGGGCCCCNGGAACCTTGGGGAAAGGGGAAAAGGAACGGGGTTTGGGGCCCCCCCGGTTTGCCACCGGGGGAATTCCGGAAATTACCCCGGCCAAACCGGCCTTAAGGCCAAGGCCGTTTTGCCCCGGTTCCAATTTTGCCCAAGGCCAGTTGGTTTAATGGAACCGTTAAACGGTGTTCCGGGTTCCCGCCGGGGATGGGTCCAATGGAAGTGCCAAAAATCGACAATACAGTAGGTGACGTCCTCACCCGGCTTTCCTGCAGCTCCACCCAGCGCTTCAACCGCACCGAGATAGTTGCCAATGTGCAGCGCACCGGTCGGCTGCACGCCGGAAAACACCTTCCGTGGCCATGGCGCGGGCTTCGCTTCTGCGGAAAGGAAGCGATTTTGCTGTCGTAGCCGTTTGTATTCTTCAGCAGAAAGGGTAAAACACGTTTAGCGCTAACCTCGTGGCGATTCTG]
[-] EMBL AL696553 [GGCGTTCAGGGACCCAAGGCCTCGCCAAAGGAAAAATTGCGCCCAAAGGGAACCCAAAGGGTTNTTTCCGGGGGCCAAATTTGCGCGCCTTCAGCGCCCGGGGAANACCCGGGCCCCNGGAACCTTGGGGAAAGGGGAAAAGGAACGGGGTTTGGGGCCCCCCCGGTTTGCCACCGGGGGAATTCCGGAAATTACCCCGGCCAAACCGGCCTTAAGGCCAAGGCCGTTTTGCCCCGGTTCCAATTTTGCCCAAGGCCAGTTGGTTTAATGGAACCGTTAAACGGTGTTCCGGGTTCCCGCCGGGGATGGGTCCAATGGAAGTGCCAAAAATCGACAATACAGTAGGTGACGTCCTCACCCGGCTTTCCTGCAGCTCCACCCAGCGCTTCAACCGCACCGAGATAGTTGCCAATGTGCAGCGCACCGGTCGGCTGCACGCCGGAAAACACCTTCCGTGGCCATGGCGCGGGCTTCGCTTCTGCGGAAAGGAAGCGATTTTGCTGTCGTAGCCGTTTGTATTCTTCAGCAGAAAGGGTAAAACACGTTTAGCGCTAACCTCGTGGCGATTCTG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8336#0 ATTTTATTTAACTCTCCTGCCGCACATTCCTTCGCCGCCGGCCAGCACGTAACCCATCGA 60
consensus_8336#1 ------------------------------------------------------------
consensus_8336#0 CACCGATCTTCTCCTTCACCTCGTCGATCGTCTGCTCCGCTATCGCCCGCGCCCGCTCAC 120
consensus_8336#1 ------------------------------------------------------------
consensus_8336#0 TGCCCTCCTCGATAACGTCGGCCAAATAGCCAACATCCCGCGTGTACCGCTCCATCCGCT 180
consensus_8336#1 ------------------------------------------------------------
consensus_8336#0 CCCGGATCGGCCGCAGATGCTCAATCAACGCTTCCGCCACCAGCAGCTTGTACTGGCCCG 240
consensus_8336#1 ------------------------------------------------------------
consensus_8336#0 TGTTTTTCCCCACCGCCTCCCGGCATATCTCCTCCACCGGTTTGCCACTGACCAGCGAGT 300
consensus_8336#1 ------------------------------------------------------------
consensus_8336#0 GGATCGTGATCAGATTCGACACGCCGGGCCGCTCTTTCGCATCGAACGTAACCTCCGACC 360
consensus_8336#1 ------------------------------------------------------------
consensus_8336#0 GGAAATCCGTCACCGACTTCTTCACCTTCTCCAGCACCACGTCGGCCGGGTCGATCAGCA 420
consensus_8336#1 ------------------------------------------------------------
consensus_8336#0 TGATGCAGCTCTTCGGGTCCGGATCCGATTTGGACATCTTTTTTGACGGGTCGCGCAACG 480
consensus_8336#1 ------------------------------------------------------------
consensus_8336#0 ACTTCAGCCGGCTGCCGTCGTTCACGAGCGTCTCGCAGAACGGGAACGTTCGGCCGTACT 540
consensus_8336#1 ------------------------------------------------------------
consensus_8336#0 TGTTGTTGAACGCGCGCGCCAACGATTGAGCCAGCTGCAGCTGCTGGATTTGATCCTCCC 600
consensus_8336#1 ------------GGCGTTCAGGGACCCAAGGCCTCGCCAAAGGAAAAATTGCGCCCAAAG 48
*** * ** * * ** * *** **
consensus_8336#0 CGACCGGCACGTGGGTCGCTTTGTACAGCATAATGTCGGCCGCCTGCAGGACCGGGTAGA 660
consensus_8336#1 GGAAC--CCAAAGGGTTNTTTCCGGGGGCCAAAT-TTGCGCGCCTTCAGCGCCCGGGGAA 105
** * * **** ** ** *** * * ***** *** ** ** *
consensus_8336#0 GGTACAGGCCGAGCGGAATTTCCTTCATGTTGGCCGACTTTTCCTTGTACTGGGGAAGAT 720
consensus_8336#1 NACCCGGGCCCCNGGAA----CCTTGGGGAAAGGGGA--------------AAAGGAACG 147
* **** * * **** * * ** * *
consensus_8336#0 GGGTCAGGCGTGCCATCGTCGTCAGACAGCCCAGAATCCAGGACAGTTCGGCATGCTGCG 780
consensus_8336#1 GGGTTTGGGGCCCCCCCG--GTTTGCCACCGGGGGAATTCCGGAAATTACCCCGGC--CA 203
**** ** * ** ** ** * ** * * * * * ** * ** *
consensus_8336#0 GAACGGCCGACTGGAGGAAGAGGGTGGCCCGTGCCGGATCGATACCGCACGCTAGCAGCG 840
consensus_8336#1 AACCGGCC---TTAAGGCCAAGGCCGTTTTGCCCCGGTTCCA-ATTTTGCCCAAGGCCAG 259
* ***** * *** *** * * **** ** * * * * ** *
consensus_8336#0 TTGCCGTCATTTGCAGCGTGTTGTGACGTAACGTGTCGGGGTCCGGCGGGATGGTCATGG 900
consensus_8336#1 TTGGT-TTAATGGAACCGTTAAACGGTGTTCCGGGTTCCCGCCGGGGATGGGTCCAATGG 318
*** * * * * * *** * ** ** ** * * ** * ****
consensus_8336#0 A-GTGC---AAATCAACAATACAGTAGGTGACGTCCTC-TCCGGCTT-CCTGCAGCTCCA 954
consensus_8336#1 AAGTGCCAAAAATCGACAATACAGTAGGTGACGTCCTCACCCGGCTTTCCTGCAGCTCCA 378
* **** ***** *********************** ******* ************
consensus_8336#0 CCCAGCGCTTCA-CCGCACCGAGATAGTTGCCAATGTGCAGCGCACCGGTCGGCTGCACG 1013
consensus_8336#1 CCCAGCGCTTCAACCGCACCGAGATAGTTGCCAATGTGCAGCGCACCGGTCGGCTGCACG 438
************ ***********************************************
consensus_8336#0 CCGGAAAACACCTTCCGTGGCCATGGCGCGGGCTTCGCTTCTGCGGAAAGGAAGCGATTT 1073
consensus_8336#1 CCGGAAAACACCTTCCGTGGCCATGGCGCGGGCTTCGCTTCTGCGGAAAGGAAGCGATTT 498
************************************************************
consensus_8336#0 TGCTGTCGTAGGCTGTTCGTACTCTTCAGCAGAAAGGGTAAAACACGTTTAGC--TAACC 1131
consensus_8336#1 TGCTGTCGTAG-CCGTTTGTATTCTTCAGCAGAAAGGGTAAAACACGTTTAGCGCTAACC 557
*********** * *** *** ******************************* *****
consensus_8336#0 TCGTGGCGATTCTGCT 1147
consensus_8336#1 TCGTGGCGATTCTG-- 571
**************
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||