These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8350#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 1407 fasta sequence [GACGTAGGAAGAGGAAAAAGAAAAGGATTCTGATATTGCCAAGAAAGCCAAACGAACTACTACTACCGACAAAAAGGAGCACAAAGATGACAACAAAAAGTCCCGCCAATCGGAAAAATTGGGAGAAAGATCGGACACTCGAGCGTCTGCCGAACGTGCCAAACCGTCCGATGATGATCGTGTGCGTGTTTCCAAGCGCATTCGTCATAAAGCGTACAAAATGAAGCTGCTGGAAGAATCGGTAGATTATCAGTTGGAAGCGGAGGATGCGGCTGCTGCCACTGATGCACGTTCTACCCGAACCACGCGCAAGCAAAGGACCAAACATCTACCGATCGGGAAGAACCGATCGCTAGAATAAGTGAATCGAAGCG-ACCGAAATCTGGCCATCGTCAGCGTTCCTCGTCCACCTCCTCCACGGTTGCACCGGAGGCGGGCAGAAGGGACCGTCTGCAAAGTACGGCGAGCGACACCAGGAAGAAGGGGGTAAAATAGTGGACATACCGGAGCTGGCAACCATCCTGGTGACTGATCGAATCATTCGCACGTACAAGTTCCTGTGCGCGGTGGCCAAAGGCAT-CCCCATCGTTGGTCAGTCGTACCTGGATGCGTTGCAGCGTTCCGAGGCGAACGAGCAGATCAATCCATGGGACCACATACTTTCCGATCCGGATACGGAAAAGCGCTACAAATTTCGTCTACGCGATACGCTGCTGAAGGCACGGAAGCATAAGCTGTTTGAAGACTATACCGTGTTTGTTACAGCCACCACAAAACCACCACCCTCGGAACTGTTTC-TAATACTTACGTGCGCCGGGGC-AAAAGCATCGAAACATTGCAACCAACCATCAGTTGCTGGAGGTAAGGCGTTCGTCATCTCCGATCCTGCCGACGC-TGCGTCCTGGGCACGGTACAGGGAACGGTTGCCCGGCAT-CGAAATAGTGTCAGCGGAAGGTTTCATGCTCTCGATAATGCAGCATTCTAAAAATTTCCAAAAACACCATCTAATGTAGGGAGTCGAAAAGCTACTGCCATTTTACAGAGCGATGAAATGTATGCATAAGATTGAACTATCGCTGTTCTCGTAAATATGTGAATGTGAATACTTAGGTTTGGTTGTTTGTTTTTTGTCCAAGC-TTAATTTTTAGTATCCAAGTTTTGTCTGTTTCATCGTAGCATTGCAATAATTGAACCTAGCCTCAGTGAGGCCCACGGCAACAACATGTTAGTAGATGGTGTTGCGAGTAATATTATTTAAAACTGGAAACAGCTTCCAATTATGTATTATCTTGCGTTATATATTGCTAAACTGAGCCAGTGAAATCAATGTCTTTATGAAACGAATTTATGTAGTGTTTTGTTCCTATATTGCCTTGTTCGTTCAGAGAAAATAAAATGCACTATCCT] [+] EMBL CNS08WO4 [GACGTAGGAAGAGGAAAAAGAAAAGGATTCTGATATTGCCAAGAAAGCCAAACGAACTACTACTACCGACAAAAAGGAGCACAAAGATGACAACAAAAAGTCCCGCCAATCGGAAAAATTGGGAGAAAGATCGGACACTCGAGCGTCTGCCGAACGTGCCAAACCGTCCGATGATGATCGTGTGCGTGTTTCCAAGCGCATTCGTCATAAAGCGTACAAAATGAAGCTGCTGGAAGAATCGGTAGATTATCAGTTGGAAGCGGAGGATGCGGCTGCTGCCACTGATGCACGTTCTACCCGAACCACGCGCAAGC AAGGACCAAACATCTACCGATCGGGAAGAACCGATCGCTAGAATAAGTGAATCTTATTG ACCGAAATCTGGCCATCGTCAGCGTTCCTCGTCCACCTCCTCCACGGTTGCACCGGAGGCGGGCAGAAGGGACCGTTTTTTAAGTACGGCGAGCGACACCAGGAAGAAGGGGGTAAAATAGTGGACATACCGGAGCTGGCAACCATCCTGGTGACTGATCGAATCATTCGCACGTACAAGTTCCTGTGCGCGGTGGCCAAAGGCAT CCCCATCGTTGGTCAGTCGTACCTGGATGCGTTGCAGCGTTCCGAGGCGAACGAGCAGATCAATCCATGGGACCACATACTTTCCGATCCGGATACGGAAAAGCGCTACAAATTTCGTCTACGCGATACGCTGCTGAAGGCACGGAAGCATAAGCTGTTTGAAGACTATACCGTGTTTGTTACAGCCACCACAAAACCACCACCCTCGGAACTGTTTC TAATACTTACGTGCGCCGGGGC AAAAGCATCGAAACATTGCAACCAACCATCAGTTGCTGGAGGTAAGGCGTTCGTCATCTCCGATCCTGCCGACGC TGCGTCCTGGGCACGGTACAGGGAACGGTTGCCCGGCAT CGAAATAGTGTCAGCGGAAGGTTTCATGCTCTCGATAA ] [+] EMBL CNS08G72 [ AAAAG AAAGGATTCTGATATTGCCAGGGAAGCCAAACGAACTACTACTACCGACAAAAAGGAGCACAAAGATGACAACAAAAAGTCCCGCCAATCGGAAAAATTGGGAGAAAGATCGGACACTCGAGCGTCTGCCGAACGTGCCAAACCGTCCGATGATGATCGTGTGCGTGTTTCCAAGCGCATTCGTCATAAAGCGTACAAAATGAAGCTGCTGGAAGAATCGGTAGATTATCAGTTGGAAGCGGAGGATGCGGCTGCTGCCACTGATGCACGTTCTACCCGAACCACGCGCAAGCAAAGGAACAAACATCTA ] [+] EMBL CNS08X51 [ ACCGACAAAAAGGAGCACAAAGATGACAACAAAAAGTCCCGCCAATCGGAAAAATTGGGAGAAAGATCGGACACTCGAACGTCTGCCGAACGTGCCAAACCGTCCGATGATGATCGTGTGCGTGTTTCCAAGCGCATTCGTCATAAAGCGTACAAAATGAAGCTGCTGGAAGAATCGGTAGATTATCAGTTGGAAGCGGAGGATGCGGCTGCTGCCACTGATGCACGTTCTACCCGAACCACGCGCAAGCAAAGGACCAAACATCTACCGATCGGGAAGAACCGATCGCTAGAATAAGTGAATCGAAGCGCACCGAAATCTGGCCATCGTCAGCGTTCCTCGTCCACCTCCTCCACGGTTGCACCGGAGGCGGGCAGAAGGGACCGTCTGCAAAGTACGGCGAGCGACACCAGGAAGAAGGGGGTAAAATAGTGG ] [+] EMBL CNS08KWY [ AACATCTACCGATCGGGAAGAACCGATCGCTAGAATAAGTGAATCG AGCG ACCGAAATCTGGCCATCGTCAGCGTTCCTCGTCCACCTCCTCCACGGTTGCACCGGA GCGGGCAGAAGGGACCGTCTGCAAAGTACGGCGAGCGACACCAGGAAGAAGGGGGTAAAATAGTGGACATACCGGAGCTGGCAACCATCCTGGTGACTGATCGAATCATTCGCACGTACAAGTTCCTGTGCGCGGTGGCCAAAGGCAT CCCCATCGTTGGTCAGTCGTACCTGGATGCGTTGCAGCGTTCCGAGGCGAACGAGCAGATCAATCCATGGGAac ] [-] EMBL CNS08WO5 [ ACACCAGGAAGAAGGGGGTAAAATAGTGGACATACCGGAGCTGGCAACCATCCTGGTGACTGATCGAATCATTCGCACGTACAAGTTCCTGTGCGCGGTGGCCAAAGGCAT CCCCATCGTTGGTCAGTCGTACCTGGATGCGTTGCAGCGTTCCGAGGCGAACGAGCAGATCAATCCATGGGACCACATACTTTCCGATCCGGATACGGAAAAGCGCTACAAATTTCGTCTACGCGATACGCTGCTGAAGGCACGGAAGCATAAGCTGTTTGAAGACTATACCGTGTTTGTTACAGCCACCACAAAACCACCACCCTCGGAACTGTTTC TAATACTTACGTGCGCCGGGGC AAAAGCATCGAAACATTGCAACCAACCTTCAGTTGCTGGAGGTAAGGCGTTCGTCATCTCCGATCCTGCCGACGC TGCGTCCTGGGCACGGTACAGGGAACGGTTGCCCGGCAA AAAAATAGTGTCAGCGGAAGGTTTCATGCTCTCGATAATGCAGCATTCTAAAAATTTCCAAAAACACCATCTAATGTAGGGAGTCGAAATTCTACTGCCATTTTACAGAGCGATGAAATGTATGCATAAGATTGAACTATCGCTGTTCTCGTAAATATGTGAATGTGAATACTTAGGTTTGGTTGTTTGTTTTTTGTCCAAGC TTAATTTTTAGTATCCAAGTTTTGTCTGTTTCATCGTAGCATTGCAATAATTGAACCTAGCCTCAGTGAGGCCCACGGCAACAACATGTTAGTAGATGGTGTTGCGAGTAATATTATTTAAAACTGGAAACAGCTTCCAATTATGTATTATCTTGCGTTATATATTGCTAAACTGAGCCAGTGAAATCAATGTCTTTATGAAACGAATTTATGTAGTGTTTTGTTCCTATATTGCCTTGTTCGTTCAGAGAAAATAAAA ] [-] EMBL CNS08KWZ [ GGGTAAAATAGTGGACATACCGGAGCTGGCAACCATCCTGGTGACTGATCGAATTATTCGCACGTACAAGTTCCTGTGCGCGGTGGCCAAAGGCATCCCCCATCGTTGGTCAGTCGTACCTGGATGCGTTGCAGCGTTCCGAGGCGAACGAGCAGATCAATCCATGGGACCACATACTTTCCGATCCGGATACGGAAAAGCGCTACAAATTTCGTCTACGCGATACGCTGCTGAAGGCACGGAAGCATAAGCTGTTTGAAGACTATACCGTGTTTGTTACAGCCACCACAAAACCACCACCCTCGGAACTGTTTC TAATACTTACGTGCGCCGGGGC AAAAGCATCGAAACATTGCAACCAACCATCAGTTGCTGGAGGTAAGGCGTTCGTCATCTCCGATCCTGCCGACGCTTGCGTCCTGGGCACGGTACAGGGAACGGTTGCCCGGCAT CGAAATAGTGTCAGCGGAAGGTTTCATGCTCTCGATAATGCAGCATTCTAAAAATTTCCAAAAACACCATCTAATGTAGGGAGTCGAAAAGCTACTGCCATTTTACAGAGCGATGAAATGTATGCATAAGATTGAACTATCGCTGTTCTCGTAAATATGTGAATGTGAATACTTAGGTTTGGTTGTTTGTTTTTTGTCCAAGC TTAATTTTTAGTATCCAAGTTTTGTCTGTTTCATCGTAGCATTGCAATAATTGAACCTAGCCTCAGTGAGGCCCACGGCAACAACATGTTAGTAGATGGTGTTGCGAGTAATATTATTTAAAACTGGAAACAGCTTCCAATTATGTATTATCTTGCGTTATATATTGCTAAACTGAGCCAGTGAAATCAATGTCTTTATGAAACGAATTTATGTAGTGTTTTGTTCCTATATTGCCTTGTTCGTTCAGAGAAAATAAAATGCACTAT ] [-] EMBL CNS08X52 [ CACCACCCTCGGAACTGTTTCTTAATACTTACGTGCGCCGGGGCAAAAAGCATCGAAACATTGCAACCAACCATCAGTTGCTGGAGGTAAGGCGTTCGTCATCTCCGATCCTGCCGACGC TGCGTCCTGGGCACGGTACAGGGAACGGTTGCCCGGCATCCGAAATAGTGTCAGCGGAAGGTTTCATGCTCTCGATAATGCAGCATTCTAAAAATTTCCAAAAACACCATCTAATGTAGGGAGTCGAAAAGCTACTGCCATTTTACAGAGCGATGAAATGTATGCATAAGATTGAACTATCGCTGTTCTCGTAAATATGTGAATGTGAATACTTAGGTTTGGTTGTTTGTTTTTTGTCCAAGCTTTAATTTTTAGTATCCAAGTTTTGTCTGTTTCATCGTAGCATTGCAATAATTGAACCTAGCCTCAGTGAGGCCCACGGCAACAACATGTTAGTAGATGGTGTTGCGAGTAATATTATTTAAAACTGGAAACAGCTTCCAATTATGTATTATCTTGCGTTATATATTGCTAAACTGAGCCAGTGAAATCAATGTCTTTATGAAACGAATTTATGTAGTGTTTTGTTCCTATATTGCCTTG TCGTTC ] [-] EMBL CNS08G73 [ CAGCGGAAGGTTTCATGCTCTCGATAATGCAGCATTCTAAAAATTTCCAAAAACACCATCTAATGTAGGGAGTCGAAAAGCTACTGCCATTTTACAGAGCGATGAAATGTATGCATAAGATTGAACTATCGCTGTTCTCGTAAATATGTGAATGTGAATACTTAGGTTTGGTTGTTTGTTTTTTGTCCAAGC TTAATTTTTAGTATCCAAGTTTTGTCTGTTTCATCGTAGCATTGCAATAATTGAACCTAGCCTCAGTGAGGCCCACGGCAACAACATGTTAGTAGATGGTGTTGCGAGTAATATTATTTAAAACTGGAAACAGCTTCCAATTATGTATTATCTTGCGTTATATATTGCTAAACTGAGCCAGTGAAATCAATGTCTTTATGAAACGAATTTATGTAGTGTTTTGTTCCTATATTGCCTTGTTCGTTCAGAGAAAATAAAATGCACTATCCT] consensusID : consensus_8350#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 656 fasta sequence [GACCCACGCGTCCGTGCGGCTGCTGCCACTGATGCACGCTCTACCCGAACCACGCGCAAGCGCAAGGACCAAACATCTACCGATCGGGAGGAACCGATCGCTAGAATAAGTGAATCGAAGCGACCGAAATCTGGCCATCGTCAGCGTTCCTCGTCCACCTCCTCCACGGTTGCACCGGAGGCGGGCAGAAGGGACCGTCTGCAAAGTACGGCGAGCGACACCAGGAAGAAGGTAGTGGAAATCGCTGCTGATTTGGTTGTGGGACACGGTGTTACGTCGGGTGGGTCAAGTGGTGGTGATGGCCTGTTGGGGAATGTCAGTGTCACTAGCAGTACGGCGAGTGATGATTCAGCAGTGGCGGGACGATCCATCCGACCGCGACTAATATTCACGAGAATGAACCCCGAGCCCTATCGAAAGTGTATAGCCCGTGCGGGGGGTAAAATAGTGGACATGCCGGAGCTGGCAACTATCCTAGTGACTGATCGAATCATTCGCACGTACAAGTTCCTGTGCGCGGTGGCCAAAGGAATCCCCATCGTTGGTCAGTCGTACCTGGATGCGTTGCAGCGTTCCGAGGCGAACGAGCAGATCAATCCATGGGGACCACATACTTTCCGATCCGGATACGGAAAAGCGCTACAAATTTCGTCTAC] [+] EMBL BM639749 [GACCCACGCGTCCGTGCGGCTGCTGCCACTGATGCACGCTCTACCCGAACCACGCGCAAGCGCAAGGACCAAACATCTACCGATCGGGAGGAACCGATCGCTAGAATAAGTGAATCGAAGCGACCGAAATCTGGCCATCGTCAGCGTTCCTCGTCCACCTCCTCCACGGTTGCACCGGAGGCGGGCAGAAGGGACCGTCTGCAAAGTACGGCGAGCGACACCAGGAAGAAGGTAGTGGAAATCGCTGCTGATTTGGTTGTGGGACACGGTGTTACGTCGGGTGGGTCAAGTGGTGGTGATGGCCTGTTGGGGAATGTCAGTGTCACTAGCAGTACGGCGAGTGATGATTCAGCAGTGGCGGGACGATCCATCCGACCGCGACTAATATTCACGAGAATGAACCCCGAGCCCTATCGAAAGTGTATAGCCCGTGCGGGGGGTAAAATAGTGGACATGCCGGAGCTGGCAACTATCCTAGTGACTGATCGAATCATTCGCACGTACAAGTTCCTGTGCGCGGTGGCCAAAGGAATCCCCATCGTTGGTCAGTCGTACCTGGATGCGTTGCAGCGTTCCGAGGCGAACGAGCAGATCAATCCATGGGGACCACATACTTTCCGATCCGGATACGGAAAAGCGCTACAAATTTCGTCTAC] [+] EMBL BX627351 [ ACCGCNACTAATATTCACGAGAATGAGCCCCGAGCCCTATCGAAAGTGTATAGCCCGTGCGGGGGGTAAAATANTGGACATGCCGGATCTGGCAACTATCCTg ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8350#0 GACGTAGGAAGAGGAAAAAGAAAAGGATTCTGATATTGCCAAGAAAGCCAAACGAACTAC 60 consensus_8350#1 -------------------------GACCCACGCGTCCGTGCGGCTGCTGCCACTGATGC 35 ** * * * ** * * consensus_8350#0 TACTACCGACAAAAAGGAGCACAAAGATGACAACAAAAAGTCCCGCCAATCGGAAAAATT 120 consensus_8350#1 ACGCTCTACCCGAACCACGCGCAAGCGCAAGGACCAAACATCTACCGATCGGGAGGAACC 95 * * ** ** *** * ** *** ** * * *** ** consensus_8350#0 GGGAGAAAGATCGGACACTCGAGCGTCTGCCGAACGTGCCAAACCGTCCGATGATGATCG 180 consensus_8350#1 GATCGCTAGAATAAGTGAATCGAAGCGACCGAAATCTGGCCA-TCGTC-AGCGTTCCTCG 153 * * *** * * ** ** * * **** * * *** consensus_8350#0 TGTGCGTGTTTCCAAGCGCATTCGTCATAAAGCGTACAAAATGAAGCTGCTGGAAGAATC 240 consensus_8350#1 TCCACCTCCTCC---ACGGTTGCACCG-GAGGCGGGCAGAAGGGACCGTCTGCAAAGTAC 209 * * * * * ** * * * * *** ** ** * * * *** ** * consensus_8350#0 GGTAGAT--TATCAGTTGGAAG-CGGAGGATGCGGCTGCTGCCACTGATGCACGTTCTAC 297 consensus_8350#1 GGCGAGCGACACCAGGAAGAAGGTAGTGGAAATCGCTGCTGATTTGGTTGTGGGACACGG 269 ** * *** **** * *** ******* * ** * consensus_8350#0 CCGAACCACGCGCAAGCAAAGGACCAAACATCTACCGATCGGGAAGAACCGATCGCTAGA 357 consensus_8350#1 TGTTACGTCGGGTGGGTCAAGTGGTGGTGATGGCCTGTTGGGGAATG-----TCAGTGTC 324 ** ** * * *** ** * * * ***** ** * consensus_8350#0 ATAAGTGAATCGAAGCGACCGAAATCTGGCCATCGTCAGCGTTCCTCGTCCACCTCCTCC 417 consensus_8350#1 ACTAGCAGTACG--GCGAGTGATGATTCAGCAGTGGCGGGACGATCCATCCGACCGCGAC 382 * ** ** **** ** * ** * * * * *** * * * consensus_8350#0 ACGGTTGCACCGGAGGCGGGCAGAAGGGACCGTCTGCAAAGTACGGCGAGCGACACCAGG 477 consensus_8350#1 TAATATTCAC-GAGAATGAACCCCGAGCCCTATCGAAAGTGTATAGCCCGTGC------- 434 * *** * * * * * ** * *** ** * * consensus_8350#0 AAGAAGGGGGTAAAATAGTGGACATACCGGAGCTGGCAACCATCCTGGTGACTGATCGAA 537 consensus_8350#1 ----GGGGGGTAAAATAGTGGACATGCCGGAGCTGGCAACTATCCTAGTGACTGATCGAA 490 ******************** ************** ***** ************* consensus_8350#0 TCATTCGCACGTACAAGTTCCTGTGCGCGGTGGCCAAAGGCATCCCCATCGTTGGTCAGT 597 consensus_8350#1 TCATTCGCACGTACAAGTTCCTGTGCGCGGTGGCCAAAGGAATCCCCATCGTTGGTCAGT 550 **************************************** ******************* consensus_8350#0 CGTACCTGGATGCGTTGCAGCGTTCCGAGGCGAACGAGCAGATCAATCCATGGG-ACCAC 656 consensus_8350#1 CGTACCTGGATGCGTTGCAGCGTTCCGAGGCGAACGAGCAGATCAATCCATGGGGACCAC 610 ****************************************************** ***** consensus_8350#0 ATACTTTCCGATCCGGATACGGAAAAGCGCTACAAATTTCGTCTACGCGATACGCTGCTG 716 consensus_8350#1 ATACTTTCCGATCCGGATACGGAAAAGCGCTACAAATTTCGTCTAC-------------- 656 ********************************************** consensus_8350#0 AAGGCACGGAAGCATAAGCTGTTTGAAGACTATACCGTGTTTGTTACAGCCACCACAAAA 776 consensus_8350#1 ------------------------------------------------------------ consensus_8350#0 CCACCACCCTCGGAACTGTTTCTAATACTTACGTGCGCCGGGGCAAAAGCATCGAAACAT 836 consensus_8350#1 ------------------------------------------------------------ consensus_8350#0 TGCAACCAACCATCAGTTGCTGGAGGTAAGGCGTTCGTCATCTCCGATCCTGCCGACGCT 896 consensus_8350#1 ------------------------------------------------------------ consensus_8350#0 GCGTCCTGGGCACGGTACAGGGAACGGTTGCCCGGCATCGAAATAGTGTCAGCGGAAGGT 956 consensus_8350#1 ------------------------------------------------------------ consensus_8350#0 TTCATGCTCTCGATAATGCAGCATTCTAAAAATTTCCAAAAACACCATCTAATGTAGGGA 1016 consensus_8350#1 ------------------------------------------------------------ consensus_8350#0 GTCGAAAAGCTACTGCCATTTTACAGAGCGATGAAATGTATGCATAAGATTGAACTATCG 1076 consensus_8350#1 ------------------------------------------------------------ consensus_8350#0 CTGTTCTCGTAAATATGTGAATGTGAATACTTAGGTTTGGTTGTTTGTTTTTTGTCCAAG 1136 consensus_8350#1 ------------------------------------------------------------ consensus_8350#0 CTTAATTTTTAGTATCCAAGTTTTGTCTGTTTCATCGTAGCATTGCAATAATTGAACCTA 1196 consensus_8350#1 ------------------------------------------------------------ consensus_8350#0 GCCTCAGTGAGGCCCACGGCAACAACATGTTAGTAGATGGTGTTGCGAGTAATATTATTT 1256 consensus_8350#1 ------------------------------------------------------------ consensus_8350#0 AAAACTGGAAACAGCTTCCAATTATGTATTATCTTGCGTTATATATTGCTAAACTGAGCC 1316 consensus_8350#1 ------------------------------------------------------------ consensus_8350#0 AGTGAAATCAATGTCTTTATGAAACGAATTTATGTAGTGTTTTGTTCCTATATTGCCTTG 1376 consensus_8350#1 ------------------------------------------------------------ consensus_8350#0 TTCGTTCAGAGAAAATAAAATGCACTATCCT 1407 consensus_8350#1 ------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||