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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8350#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 1407 fasta sequence
[GACGTAGGAAGAGGAAAAAGAAAAGGATTCTGATATTGCCAAGAAAGCCAAACGAACTACTACTACCGACAAAAAGGAGCACAAAGATGACAACAAAAAGTCCCGCCAATCGGAAAAATTGGGAGAAAGATCGGACACTCGAGCGTCTGCCGAACGTGCCAAACCGTCCGATGATGATCGTGTGCGTGTTTCCAAGCGCATTCGTCATAAAGCGTACAAAATGAAGCTGCTGGAAGAATCGGTAGATTATCAGTTGGAAGCGGAGGATGCGGCTGCTGCCACTGATGCACGTTCTACCCGAACCACGCGCAAGCAAAGGACCAAACATCTACCGATCGGGAAGAACCGATCGCTAGAATAAGTGAATCGAAGCG-ACCGAAATCTGGCCATCGTCAGCGTTCCTCGTCCACCTCCTCCACGGTTGCACCGGAGGCGGGCAGAAGGGACCGTCTGCAAAGTACGGCGAGCGACACCAGGAAGAAGGGGGTAAAATAGTGGACATACCGGAGCTGGCAACCATCCTGGTGACTGATCGAATCATTCGCACGTACAAGTTCCTGTGCGCGGTGGCCAAAGGCAT-CCCCATCGTTGGTCAGTCGTACCTGGATGCGTTGCAGCGTTCCGAGGCGAACGAGCAGATCAATCCATGGGACCACATACTTTCCGATCCGGATACGGAAAAGCGCTACAAATTTCGTCTACGCGATACGCTGCTGAAGGCACGGAAGCATAAGCTGTTTGAAGACTATACCGTGTTTGTTACAGCCACCACAAAACCACCACCCTCGGAACTGTTTC-TAATACTTACGTGCGCCGGGGC-AAAAGCATCGAAACATTGCAACCAACCATCAGTTGCTGGAGGTAAGGCGTTCGTCATCTCCGATCCTGCCGACGC-TGCGTCCTGGGCACGGTACAGGGAACGGTTGCCCGGCAT-CGAAATAGTGTCAGCGGAAGGTTTCATGCTCTCGATAATGCAGCATTCTAAAAATTTCCAAAAACACCATCTAATGTAGGGAGTCGAAAAGCTACTGCCATTTTACAGAGCGATGAAATGTATGCATAAGATTGAACTATCGCTGTTCTCGTAAATATGTGAATGTGAATACTTAGGTTTGGTTGTTTGTTTTTTGTCCAAGC-TTAATTTTTAGTATCCAAGTTTTGTCTGTTTCATCGTAGCATTGCAATAATTGAACCTAGCCTCAGTGAGGCCCACGGCAACAACATGTTAGTAGATGGTGTTGCGAGTAATATTATTTAAAACTGGAAACAGCTTCCAATTATGTATTATCTTGCGTTATATATTGCTAAACTGAGCCAGTGAAATCAATGTCTTTATGAAACGAATTTATGTAGTGTTTTGTTCCTATATTGCCTTGTTCGTTCAGAGAAAATAAAATGCACTATCCT]
[+] EMBL CNS08WO4 [GACGTAGGAAGAGGAAAAAGAAAAGGATTCTGATATTGCCAAGAAAGCCAAACGAACTACTACTACCGACAAAAAGGAGCACAAAGATGACAACAAAAAGTCCCGCCAATCGGAAAAATTGGGAGAAAGATCGGACACTCGAGCGTCTGCCGAACGTGCCAAACCGTCCGATGATGATCGTGTGCGTGTTTCCAAGCGCATTCGTCATAAAGCGTACAAAATGAAGCTGCTGGAAGAATCGGTAGATTATCAGTTGGAAGCGGAGGATGCGGCTGCTGCCACTGATGCACGTTCTACCCGAACCACGCGCAAGC AAGGACCAAACATCTACCGATCGGGAAGAACCGATCGCTAGAATAAGTGAATCTTATTG ACCGAAATCTGGCCATCGTCAGCGTTCCTCGTCCACCTCCTCCACGGTTGCACCGGAGGCGGGCAGAAGGGACCGTTTTTTAAGTACGGCGAGCGACACCAGGAAGAAGGGGGTAAAATAGTGGACATACCGGAGCTGGCAACCATCCTGGTGACTGATCGAATCATTCGCACGTACAAGTTCCTGTGCGCGGTGGCCAAAGGCAT CCCCATCGTTGGTCAGTCGTACCTGGATGCGTTGCAGCGTTCCGAGGCGAACGAGCAGATCAATCCATGGGACCACATACTTTCCGATCCGGATACGGAAAAGCGCTACAAATTTCGTCTACGCGATACGCTGCTGAAGGCACGGAAGCATAAGCTGTTTGAAGACTATACCGTGTTTGTTACAGCCACCACAAAACCACCACCCTCGGAACTGTTTC TAATACTTACGTGCGCCGGGGC AAAAGCATCGAAACATTGCAACCAACCATCAGTTGCTGGAGGTAAGGCGTTCGTCATCTCCGATCCTGCCGACGC TGCGTCCTGGGCACGGTACAGGGAACGGTTGCCCGGCAT CGAAATAGTGTCAGCGGAAGGTTTCATGCTCTCGATAA ]
[+] EMBL CNS08G72 [ AAAAG AAAGGATTCTGATATTGCCAGGGAAGCCAAACGAACTACTACTACCGACAAAAAGGAGCACAAAGATGACAACAAAAAGTCCCGCCAATCGGAAAAATTGGGAGAAAGATCGGACACTCGAGCGTCTGCCGAACGTGCCAAACCGTCCGATGATGATCGTGTGCGTGTTTCCAAGCGCATTCGTCATAAAGCGTACAAAATGAAGCTGCTGGAAGAATCGGTAGATTATCAGTTGGAAGCGGAGGATGCGGCTGCTGCCACTGATGCACGTTCTACCCGAACCACGCGCAAGCAAAGGAACAAACATCTA ]
[+] EMBL CNS08X51 [ ACCGACAAAAAGGAGCACAAAGATGACAACAAAAAGTCCCGCCAATCGGAAAAATTGGGAGAAAGATCGGACACTCGAACGTCTGCCGAACGTGCCAAACCGTCCGATGATGATCGTGTGCGTGTTTCCAAGCGCATTCGTCATAAAGCGTACAAAATGAAGCTGCTGGAAGAATCGGTAGATTATCAGTTGGAAGCGGAGGATGCGGCTGCTGCCACTGATGCACGTTCTACCCGAACCACGCGCAAGCAAAGGACCAAACATCTACCGATCGGGAAGAACCGATCGCTAGAATAAGTGAATCGAAGCGCACCGAAATCTGGCCATCGTCAGCGTTCCTCGTCCACCTCCTCCACGGTTGCACCGGAGGCGGGCAGAAGGGACCGTCTGCAAAGTACGGCGAGCGACACCAGGAAGAAGGGGGTAAAATAGTGG ]
[+] EMBL CNS08KWY [ AACATCTACCGATCGGGAAGAACCGATCGCTAGAATAAGTGAATCG AGCG ACCGAAATCTGGCCATCGTCAGCGTTCCTCGTCCACCTCCTCCACGGTTGCACCGGA GCGGGCAGAAGGGACCGTCTGCAAAGTACGGCGAGCGACACCAGGAAGAAGGGGGTAAAATAGTGGACATACCGGAGCTGGCAACCATCCTGGTGACTGATCGAATCATTCGCACGTACAAGTTCCTGTGCGCGGTGGCCAAAGGCAT CCCCATCGTTGGTCAGTCGTACCTGGATGCGTTGCAGCGTTCCGAGGCGAACGAGCAGATCAATCCATGGGAac ]
[-] EMBL CNS08WO5 [ ACACCAGGAAGAAGGGGGTAAAATAGTGGACATACCGGAGCTGGCAACCATCCTGGTGACTGATCGAATCATTCGCACGTACAAGTTCCTGTGCGCGGTGGCCAAAGGCAT CCCCATCGTTGGTCAGTCGTACCTGGATGCGTTGCAGCGTTCCGAGGCGAACGAGCAGATCAATCCATGGGACCACATACTTTCCGATCCGGATACGGAAAAGCGCTACAAATTTCGTCTACGCGATACGCTGCTGAAGGCACGGAAGCATAAGCTGTTTGAAGACTATACCGTGTTTGTTACAGCCACCACAAAACCACCACCCTCGGAACTGTTTC TAATACTTACGTGCGCCGGGGC AAAAGCATCGAAACATTGCAACCAACCTTCAGTTGCTGGAGGTAAGGCGTTCGTCATCTCCGATCCTGCCGACGC TGCGTCCTGGGCACGGTACAGGGAACGGTTGCCCGGCAA AAAAATAGTGTCAGCGGAAGGTTTCATGCTCTCGATAATGCAGCATTCTAAAAATTTCCAAAAACACCATCTAATGTAGGGAGTCGAAATTCTACTGCCATTTTACAGAGCGATGAAATGTATGCATAAGATTGAACTATCGCTGTTCTCGTAAATATGTGAATGTGAATACTTAGGTTTGGTTGTTTGTTTTTTGTCCAAGC TTAATTTTTAGTATCCAAGTTTTGTCTGTTTCATCGTAGCATTGCAATAATTGAACCTAGCCTCAGTGAGGCCCACGGCAACAACATGTTAGTAGATGGTGTTGCGAGTAATATTATTTAAAACTGGAAACAGCTTCCAATTATGTATTATCTTGCGTTATATATTGCTAAACTGAGCCAGTGAAATCAATGTCTTTATGAAACGAATTTATGTAGTGTTTTGTTCCTATATTGCCTTGTTCGTTCAGAGAAAATAAAA ]
[-] EMBL CNS08KWZ [ GGGTAAAATAGTGGACATACCGGAGCTGGCAACCATCCTGGTGACTGATCGAATTATTCGCACGTACAAGTTCCTGTGCGCGGTGGCCAAAGGCATCCCCCATCGTTGGTCAGTCGTACCTGGATGCGTTGCAGCGTTCCGAGGCGAACGAGCAGATCAATCCATGGGACCACATACTTTCCGATCCGGATACGGAAAAGCGCTACAAATTTCGTCTACGCGATACGCTGCTGAAGGCACGGAAGCATAAGCTGTTTGAAGACTATACCGTGTTTGTTACAGCCACCACAAAACCACCACCCTCGGAACTGTTTC TAATACTTACGTGCGCCGGGGC AAAAGCATCGAAACATTGCAACCAACCATCAGTTGCTGGAGGTAAGGCGTTCGTCATCTCCGATCCTGCCGACGCTTGCGTCCTGGGCACGGTACAGGGAACGGTTGCCCGGCAT CGAAATAGTGTCAGCGGAAGGTTTCATGCTCTCGATAATGCAGCATTCTAAAAATTTCCAAAAACACCATCTAATGTAGGGAGTCGAAAAGCTACTGCCATTTTACAGAGCGATGAAATGTATGCATAAGATTGAACTATCGCTGTTCTCGTAAATATGTGAATGTGAATACTTAGGTTTGGTTGTTTGTTTTTTGTCCAAGC TTAATTTTTAGTATCCAAGTTTTGTCTGTTTCATCGTAGCATTGCAATAATTGAACCTAGCCTCAGTGAGGCCCACGGCAACAACATGTTAGTAGATGGTGTTGCGAGTAATATTATTTAAAACTGGAAACAGCTTCCAATTATGTATTATCTTGCGTTATATATTGCTAAACTGAGCCAGTGAAATCAATGTCTTTATGAAACGAATTTATGTAGTGTTTTGTTCCTATATTGCCTTGTTCGTTCAGAGAAAATAAAATGCACTAT ]
[-] EMBL CNS08X52 [ CACCACCCTCGGAACTGTTTCTTAATACTTACGTGCGCCGGGGCAAAAAGCATCGAAACATTGCAACCAACCATCAGTTGCTGGAGGTAAGGCGTTCGTCATCTCCGATCCTGCCGACGC TGCGTCCTGGGCACGGTACAGGGAACGGTTGCCCGGCATCCGAAATAGTGTCAGCGGAAGGTTTCATGCTCTCGATAATGCAGCATTCTAAAAATTTCCAAAAACACCATCTAATGTAGGGAGTCGAAAAGCTACTGCCATTTTACAGAGCGATGAAATGTATGCATAAGATTGAACTATCGCTGTTCTCGTAAATATGTGAATGTGAATACTTAGGTTTGGTTGTTTGTTTTTTGTCCAAGCTTTAATTTTTAGTATCCAAGTTTTGTCTGTTTCATCGTAGCATTGCAATAATTGAACCTAGCCTCAGTGAGGCCCACGGCAACAACATGTTAGTAGATGGTGTTGCGAGTAATATTATTTAAAACTGGAAACAGCTTCCAATTATGTATTATCTTGCGTTATATATTGCTAAACTGAGCCAGTGAAATCAATGTCTTTATGAAACGAATTTATGTAGTGTTTTGTTCCTATATTGCCTTG TCGTTC ]
[-] EMBL CNS08G73 [ CAGCGGAAGGTTTCATGCTCTCGATAATGCAGCATTCTAAAAATTTCCAAAAACACCATCTAATGTAGGGAGTCGAAAAGCTACTGCCATTTTACAGAGCGATGAAATGTATGCATAAGATTGAACTATCGCTGTTCTCGTAAATATGTGAATGTGAATACTTAGGTTTGGTTGTTTGTTTTTTGTCCAAGC TTAATTTTTAGTATCCAAGTTTTGTCTGTTTCATCGTAGCATTGCAATAATTGAACCTAGCCTCAGTGAGGCCCACGGCAACAACATGTTAGTAGATGGTGTTGCGAGTAATATTATTTAAAACTGGAAACAGCTTCCAATTATGTATTATCTTGCGTTATATATTGCTAAACTGAGCCAGTGAAATCAATGTCTTTATGAAACGAATTTATGTAGTGTTTTGTTCCTATATTGCCTTGTTCGTTCAGAGAAAATAAAATGCACTATCCT]
consensusID : consensus_8350#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 656 fasta sequence
[GACCCACGCGTCCGTGCGGCTGCTGCCACTGATGCACGCTCTACCCGAACCACGCGCAAGCGCAAGGACCAAACATCTACCGATCGGGAGGAACCGATCGCTAGAATAAGTGAATCGAAGCGACCGAAATCTGGCCATCGTCAGCGTTCCTCGTCCACCTCCTCCACGGTTGCACCGGAGGCGGGCAGAAGGGACCGTCTGCAAAGTACGGCGAGCGACACCAGGAAGAAGGTAGTGGAAATCGCTGCTGATTTGGTTGTGGGACACGGTGTTACGTCGGGTGGGTCAAGTGGTGGTGATGGCCTGTTGGGGAATGTCAGTGTCACTAGCAGTACGGCGAGTGATGATTCAGCAGTGGCGGGACGATCCATCCGACCGCGACTAATATTCACGAGAATGAACCCCGAGCCCTATCGAAAGTGTATAGCCCGTGCGGGGGGTAAAATAGTGGACATGCCGGAGCTGGCAACTATCCTAGTGACTGATCGAATCATTCGCACGTACAAGTTCCTGTGCGCGGTGGCCAAAGGAATCCCCATCGTTGGTCAGTCGTACCTGGATGCGTTGCAGCGTTCCGAGGCGAACGAGCAGATCAATCCATGGGGACCACATACTTTCCGATCCGGATACGGAAAAGCGCTACAAATTTCGTCTAC]
[+] EMBL BM639749 [GACCCACGCGTCCGTGCGGCTGCTGCCACTGATGCACGCTCTACCCGAACCACGCGCAAGCGCAAGGACCAAACATCTACCGATCGGGAGGAACCGATCGCTAGAATAAGTGAATCGAAGCGACCGAAATCTGGCCATCGTCAGCGTTCCTCGTCCACCTCCTCCACGGTTGCACCGGAGGCGGGCAGAAGGGACCGTCTGCAAAGTACGGCGAGCGACACCAGGAAGAAGGTAGTGGAAATCGCTGCTGATTTGGTTGTGGGACACGGTGTTACGTCGGGTGGGTCAAGTGGTGGTGATGGCCTGTTGGGGAATGTCAGTGTCACTAGCAGTACGGCGAGTGATGATTCAGCAGTGGCGGGACGATCCATCCGACCGCGACTAATATTCACGAGAATGAACCCCGAGCCCTATCGAAAGTGTATAGCCCGTGCGGGGGGTAAAATAGTGGACATGCCGGAGCTGGCAACTATCCTAGTGACTGATCGAATCATTCGCACGTACAAGTTCCTGTGCGCGGTGGCCAAAGGAATCCCCATCGTTGGTCAGTCGTACCTGGATGCGTTGCAGCGTTCCGAGGCGAACGAGCAGATCAATCCATGGGGACCACATACTTTCCGATCCGGATACGGAAAAGCGCTACAAATTTCGTCTAC]
[+] EMBL BX627351 [ ACCGCNACTAATATTCACGAGAATGAGCCCCGAGCCCTATCGAAAGTGTATAGCCCGTGCGGGGGGTAAAATANTGGACATGCCGGATCTGGCAACTATCCTg ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8350#0 GACGTAGGAAGAGGAAAAAGAAAAGGATTCTGATATTGCCAAGAAAGCCAAACGAACTAC 60
consensus_8350#1 -------------------------GACCCACGCGTCCGTGCGGCTGCTGCCACTGATGC 35
** * * * ** * *
consensus_8350#0 TACTACCGACAAAAAGGAGCACAAAGATGACAACAAAAAGTCCCGCCAATCGGAAAAATT 120
consensus_8350#1 ACGCTCTACCCGAACCACGCGCAAGCGCAAGGACCAAACATCTACCGATCGGGAGGAACC 95
* * ** ** *** * ** *** ** * * *** **
consensus_8350#0 GGGAGAAAGATCGGACACTCGAGCGTCTGCCGAACGTGCCAAACCGTCCGATGATGATCG 180
consensus_8350#1 GATCGCTAGAATAAGTGAATCGAAGCGACCGAAATCTGGCCA-TCGTC-AGCGTTCCTCG 153
* * *** * * ** ** * * **** * * ***
consensus_8350#0 TGTGCGTGTTTCCAAGCGCATTCGTCATAAAGCGTACAAAATGAAGCTGCTGGAAGAATC 240
consensus_8350#1 TCCACCTCCTCC---ACGGTTGCACCG-GAGGCGGGCAGAAGGGACCGTCTGCAAAGTAC 209
* * * * * ** * * * * *** ** ** * * * *** ** *
consensus_8350#0 GGTAGAT--TATCAGTTGGAAG-CGGAGGATGCGGCTGCTGCCACTGATGCACGTTCTAC 297
consensus_8350#1 GGCGAGCGACACCAGGAAGAAGGTAGTGGAAATCGCTGCTGATTTGGTTGTGGGACACGG 269
** * *** **** * *** ******* * ** *
consensus_8350#0 CCGAACCACGCGCAAGCAAAGGACCAAACATCTACCGATCGGGAAGAACCGATCGCTAGA 357
consensus_8350#1 TGTTACGTCGGGTGGGTCAAGTGGTGGTGATGGCCTGTTGGGGAATG-----TCAGTGTC 324
** ** * * *** ** * * * ***** ** *
consensus_8350#0 ATAAGTGAATCGAAGCGACCGAAATCTGGCCATCGTCAGCGTTCCTCGTCCACCTCCTCC 417
consensus_8350#1 ACTAGCAGTACG--GCGAGTGATGATTCAGCAGTGGCGGGACGATCCATCCGACCGCGAC 382
* ** ** **** ** * ** * * * * *** * * *
consensus_8350#0 ACGGTTGCACCGGAGGCGGGCAGAAGGGACCGTCTGCAAAGTACGGCGAGCGACACCAGG 477
consensus_8350#1 TAATATTCAC-GAGAATGAACCCCGAGCCCTATCGAAAGTGTATAGCCCGTGC------- 434
* *** * * * * * ** * *** ** * *
consensus_8350#0 AAGAAGGGGGTAAAATAGTGGACATACCGGAGCTGGCAACCATCCTGGTGACTGATCGAA 537
consensus_8350#1 ----GGGGGGTAAAATAGTGGACATGCCGGAGCTGGCAACTATCCTAGTGACTGATCGAA 490
******************** ************** ***** *************
consensus_8350#0 TCATTCGCACGTACAAGTTCCTGTGCGCGGTGGCCAAAGGCATCCCCATCGTTGGTCAGT 597
consensus_8350#1 TCATTCGCACGTACAAGTTCCTGTGCGCGGTGGCCAAAGGAATCCCCATCGTTGGTCAGT 550
**************************************** *******************
consensus_8350#0 CGTACCTGGATGCGTTGCAGCGTTCCGAGGCGAACGAGCAGATCAATCCATGGG-ACCAC 656
consensus_8350#1 CGTACCTGGATGCGTTGCAGCGTTCCGAGGCGAACGAGCAGATCAATCCATGGGGACCAC 610
****************************************************** *****
consensus_8350#0 ATACTTTCCGATCCGGATACGGAAAAGCGCTACAAATTTCGTCTACGCGATACGCTGCTG 716
consensus_8350#1 ATACTTTCCGATCCGGATACGGAAAAGCGCTACAAATTTCGTCTAC-------------- 656
**********************************************
consensus_8350#0 AAGGCACGGAAGCATAAGCTGTTTGAAGACTATACCGTGTTTGTTACAGCCACCACAAAA 776
consensus_8350#1 ------------------------------------------------------------
consensus_8350#0 CCACCACCCTCGGAACTGTTTCTAATACTTACGTGCGCCGGGGCAAAAGCATCGAAACAT 836
consensus_8350#1 ------------------------------------------------------------
consensus_8350#0 TGCAACCAACCATCAGTTGCTGGAGGTAAGGCGTTCGTCATCTCCGATCCTGCCGACGCT 896
consensus_8350#1 ------------------------------------------------------------
consensus_8350#0 GCGTCCTGGGCACGGTACAGGGAACGGTTGCCCGGCATCGAAATAGTGTCAGCGGAAGGT 956
consensus_8350#1 ------------------------------------------------------------
consensus_8350#0 TTCATGCTCTCGATAATGCAGCATTCTAAAAATTTCCAAAAACACCATCTAATGTAGGGA 1016
consensus_8350#1 ------------------------------------------------------------
consensus_8350#0 GTCGAAAAGCTACTGCCATTTTACAGAGCGATGAAATGTATGCATAAGATTGAACTATCG 1076
consensus_8350#1 ------------------------------------------------------------
consensus_8350#0 CTGTTCTCGTAAATATGTGAATGTGAATACTTAGGTTTGGTTGTTTGTTTTTTGTCCAAG 1136
consensus_8350#1 ------------------------------------------------------------
consensus_8350#0 CTTAATTTTTAGTATCCAAGTTTTGTCTGTTTCATCGTAGCATTGCAATAATTGAACCTA 1196
consensus_8350#1 ------------------------------------------------------------
consensus_8350#0 GCCTCAGTGAGGCCCACGGCAACAACATGTTAGTAGATGGTGTTGCGAGTAATATTATTT 1256
consensus_8350#1 ------------------------------------------------------------
consensus_8350#0 AAAACTGGAAACAGCTTCCAATTATGTATTATCTTGCGTTATATATTGCTAAACTGAGCC 1316
consensus_8350#1 ------------------------------------------------------------
consensus_8350#0 AGTGAAATCAATGTCTTTATGAAACGAATTTATGTAGTGTTTTGTTCCTATATTGCCTTG 1376
consensus_8350#1 ------------------------------------------------------------
consensus_8350#0 TTCGTTCAGAGAAAATAAAATGCACTATCCT 1407
consensus_8350#1 -------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||