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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8371#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 887 fasta sequence
[CTACCCCCATTCTTTACATGGTCACATCCAGCATCCAAGGGGAATAGAGAATTGATGTGAAAGGTATTGTGTGATGCTATTATCGTTAAGGAGTATTTTGTTAAACGTTTTGTTTATTTAGTTTTGC-TA-TATAGCAGGCAACACAACAATATG-GG-TGATACAGATAGCGTTAGACAAACATACATACACACATACCCACACACTTAATGGTCCATTTTGTGAGAATCCATAAGGACCATCCCGAATCTACATATATGTAGCCGTACTGTGGGATCATAATTTACTAGTTTCTTTATCTCCTTTTTACCACTTTCTACCACCACTACAAACTGTTACTGTTACTGTTACTTTTTTGAGAAAACAACAACATAAAAAAGTGCTTTTTCATACTCTCATAGTAGTTACGACGCCTAGAGGTTAGAGGTTGTTTATTGTGTTTAATTTATGTTTAGCCTCGAGGGAGTGAGAGAGACAGTGAGGATTGAATCAAATCAATGGAAAAATGAACCTGCTATGCTATGAGAATACCGAAATCAAGCGAAAGACTGAGTGGCGTAAAGAATCGGAGATATGCCGAAGCGTATGGTTGCGATGCAAAAAATAGAGCGTATGTCAATGGCGAGAAGATTTTGTTCGATGGTCTTCCAGCTTACAGATAGGATAGATAGATAGATAGATAAAGGTTAGGGTAACCCCAAGGAGGGGTGTGACAATTTCCTGCGAGCCAACCAAAGCCAAGATCGGCAGGATTCCGTCGTCATAGGATGGACGCGCCAACTCCTGTATTATTCGGATGATTCACAACGTTTCCGCATAAACAAGGGAGTGAGGCGGGAGTGTTGTAATCAGCATCTAGAATCGTATAAAATCCCTGCCGAACAGCGCCG]
[+] EMBL CNS08SF5 [CTACCCCCATTCTTTACATGGTCACATCCAGCATCCAAGGGGAATAGAGAATTGATGTGAAAGGTATTGTGTGATGCTATTATCGTTAAGGAGTATTTTGTTAAACGTTTTGTTTATTTAGTTTTGC TA TATAGCAGGCAACACAACAATATG GG TGATACAGATAGCGTTAGACAAACATACATACACACATACCCACACACTTAATGGTCCATTTTGTGAGAATCCATAAGGACCATCCCGAATCTACATATATGTAGCCGTACTGTGGGATCATAATTTACTAGTTTCTTTATCTCCTTTTTACCACTTTCTACCACCACTACAAACTGTTACTGTTACTGTTACTTTTTTGAGAAAACAACAACATAAAAAAGTGCTTTTTCATACTCTCATAGTAGTTACGACGCCTAGAGGTTAGAGGTTGTTTATTGTGTTTAATTTATGTTTAGCCTCGAGGGAGTGAGAGAGACAGTGAGGATTGAATCAAATCAATGGAAAAATGAACCTGCTATGCTATGAGAATACCGAAATCAAGCGAAAGACTGAGTGGCGTAAAGAATCGGAGATATGCCGAAGCGTATGGTTGCGATGCAAAAAATAGAGCGTATGTCAATGGCGAGAAGATTTTGTTCGATGGTCTTCCAGCTTACAGATAGGATAGATAGATAGATAGATAAAGGTTAGGGTAACCCCAAGGAGGGGTGTGACAATTTCCTGCGAGCCAACCAAAGCCAAGATCGGCAGGATTCCGTCGTCATAGGATGGACGCGCCAACTCCTGTATTATTCGGATGATTCACAACGTTTCCGCATAAACAAGGGAGTGAGGCGGGAGTGTTGTAATCAGCATCTAGAATCGTATAAAATCCCTGCCGAACAGCGCCG]
[+] EMBL CNS08QBE [ TATTTTGTTAAACGTTTTGTTTATTTAGTTTTGCTTACTATAGCAGGCAACACAACAATATGAGGATGATACAGATAGCGTTAGACAAACATACATACACACATACCCACACACTTAATGGTCCATTTTGTGAGAATCCATAAGGACCATCCCGAATCTACATATATGTAGCCGTACTGTGGGATCATAATTTACTAGTTTCTTTATCTCCTTTTTACCACTTTCTACCACCACTACAAACTGTTACTGTTACTGTTAC TGTTTGAGAAAACAACAACATAAAAAAGTGCCTTTTCATACTCTCATAGTAGTTACGACGCCTAGAGGTTAGAGGTTGTTTATTGTGTTTAATTTATGTTTAGCCTCGAGGGAGTGAGAGAGACAGTAAGGATTGAATCAAATCAATGGAAAAATGAACCTGCTATGCTATGAGAATACCGAAATCAAGCGAAAGACTGAGTG ]
[-] EMBL CNS08SF6 [ TTATTGTGTTTAATTTATGTTTAGCCTCGAGGGAGTGAGAGAGACAGTGAGGATTGAATCAAATCAATGGAAAAATGAACCTGCTATGCTATGAGAATACCGAAATCAAGCGAAAGACTAAGTGGCGTAAAGAATCGGAGATATGCCGAAGCGTATGGTTGCGAAAAAAAAAATAGAGCGTATGTAAATGGCGAGAAGATTTTTTTCGATGGTCTTCC ]
consensusID : consensus_8371#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 719 fasta sequence
[AAAATCATATAAAAAGCTGCGGAATTCCTCGAGAACTGTTGGCCAACTGGCTTCTTTTCGGTTTTGACGTCGAGCAAAGCTGCCGTGTTTTCTGTACAGCAGATAAAGTGGAATATATTTCACTTTTTCCCCGCGAATAACACGTGTTTTACGAGAAATAGCAAGTGAAAATGCCGCTCGCCAAGGACTTCTTGCACCCGCTGCCCGCTGAGGAGAAGAGGAAGCACAAGCTGAAGCGCCTGGTGCCCCATCCGAACTCGTACTTCATGGACGTGAAGTGCCCCGGCTGCTACAAGATCACCACCGTCTTCAGCCATGCCCAGAGCGTCGTAGTGTGTGCCGGCTGCTCAACGATCCTGTGCCAGCCGACCGGCGGCAAGGCGCGTCTGACCGAGGGCTGCTCGTTCCGCA-GAAGCCGTACTAATAAGTGTCCGCAACAACACACACACACGGAGAGGAGGACCGAAGGGGCGATCGAACGGGCGCCTTGTGCTGCATGACGGATTGGTTGCCGAA-GAGAGCGAGAGCAAAGGGAAAGCATCATTCATCTTTAATCACCGGCGCCGTGAATTCAATCCCTTAATTGGGTGATAAACTCATCGCTACCAGTGGACAAGTTGTATTCATCCCCGAA-GAGCAAAATAAAGGAAGAAATTCGGTCGCCT-AAAAAAAAAAAAAAAAAAAAAAAAAAAGGCCACATGTGCCCGAGCTGCGGGTTG]
[-] EMBL CNS08NFF [AAAATCATATAAAAAGCTGCGGAATTCCTCGAGAACTGTTGGCCAACTGGCTTCTTTTCGGTTTTGACGTCGAGAAAAGCTGCCGTGTTTTCTGTACAGCAGATAAAGTGGAATATATTTCACTTTTTCCCCGCGAATAACACGTGTTTTACGAGAAATAGCAAGTGAAAATGCCGCTCGCCAAGGACTTTTTGTTCCCGCTGCCCGCTGAGGAGAAGAGGAAGCACAAGCTGAAGCGCCTGGTGCCCCATCCGGACTCGTACTTCATGGACGTGAAG ACCCCGGCTGCTACAAGATCACCACCGTCTTCAGCCATGCCCAGAGCGTCGTAGTGTGTGCCGGCTGCTCAACGATCCTGTGCCAGCCGACCGGCGGCAAGGCGCGTCTGACCGAGGGCTGCTCGTTCCGCAGGAAGCCGTACTAATAAGTGTCCGCAACAAAAAAAACACACGGAGAGGAGGACCGAAGGGGCGATCGAACGGGCGCCTTGTGCTGCATGACGGATTGGTTGCCGAAGGAGAGCGAGAGCGAAGCGGAAGCATCATTCATCTTTAATCACCGGCGCCGTGAATTCAATCCCTTAATTGGGTGATAAGCTCATCGCTACCAGTGGACAAGTTGTATTCATCCCCGAAGGAGCAAAATAAAGGAAGAA ]
[+] EMBL CNS08OAJ [ CTGGCTT TTCGTGTTTTTGACGTCGAGCAAAGCTGCCGTGTTTTCTGTACAGCAGATAAAGTGGAATATATTTCACTTTTTCCCCGCGAATAACACGTGTTTTACGAGAAATAGCAAGTGAAAATGCCGCTCGCCAAGGACTTCTTGCACCCGCTGCCCGCTGAGGAGAAGAGGAAGCACAAGCTGAAGCGCCTGGTGCCCCATCCGAACTCGTACTTCATGGACGTGAAGTGCCCCGGCTGCTACAAGATCACCACCGTCTTCAGCCATGCCCAGAGCGTCGTAGTGTGTGCCGGCTGCTCAACGATCCTGTGCCAGCCGACCGGCGGCAAGGCGCGTCTGACCGAGGGCTGCTCGTTCCGCA GAAGCCGTACTAATAAGTGTCCGCAACAACACACACACACGGAGAGGAGGACCGAAGGGGCGATCGAACGGGCGCCTTGTGCTGCATGACGGATTGGTTGCCGAA GAGAGCGAGAGCAAAGGGAAAGCATCATTCATCTTTAATCACCGGCGCCGTGAATTCAATCCCTTAATTGGGTGATAAACTCATCGCTACCAGTGGACAAGTTGTATTCATCCCCGAA GAGCAAAATAAAGGAAGAAATTCGGTCGCCT AAAAA ]
[+] EMBL CNS08NFE [ ACGTCGAGCAAAGCTGCCGTGTTTTCTGTACAGCAGATAAAGTGGAATATATTTCACTTTTTCCCCGCGAATAACACGTGTTTTACGAGAAATAGCAAGTGAAAATGCCGCTCGCCAAGGACTTCTTGCACCCGCTGCCCGCTGAGGAGAAGAGGAAGCACAAGCTGAAGCGCCTGGTGCCCCATCCGAACTCGTACTTCATGGACGTGAAGTGCCCCGGCTGCTACAAGATCACCACCGTCTTCAGCCATGCCCAGAGCGTCGTAGTGTGTGCCGGCTGCTCAACGATCCTGTGCCAGCCGACCGGCGGCAAGGCGCGTCTGACCGAGGGCTGCTCGTTCCGCA GAAGCCGTACTAATAAGTGTCCGCAACAATACACACACACGGAGAGGAGGACCGAAGGGGCGATCGAACGGGCGCCTTGTGCTGCATGACGGATTGGTTGCCGAA GAAAAAGAGAGCACA GGAGAGCATCATTCATCTTTAATCACCGGCGCCGTGAATTCAATCCCTTAATTGGGTGATAAGCTCATCGCTACCAGTGGACAAGTTGTATTCATCCCCGAA GAGCAAAATAAAGGAAGAAATTCGGTCGCCT AAAAAAAAAAAAAAAAAAAAAAGGCCACATGTGCCCGAGCTGCGGGTTG]
[+] EMBL CNS08YJ2 [ GTGCCCCATCCGAACTCGTACTTCATGGACGTGAAGTGCCCCGGCTGCTACAAGATCACCACCGTCTTCAGCCATGCCCAGAGCGTCGTAGTGTGTGCCGGCTGCTCAACGATCCTGTGCCAGCCGACCGGCGGCAAGGCGCGTCTGACCGAGGGCTGCTCGTTCCGCA GAAGCCGTACTAATAAGTGTCCGCAACAACACACACACACGGAGAGGAGGACCGAA GGGCGATCGAACGGGCGCCTTGTGCTGCATGACGGATTGGTTGCCGAA GAGAGCGAGAGCACAGGTACAGCATCATTCATCTTTAATCACCGGCGCCGTGAATTCAATCCCTTAATTGGGTGATAAACTCATCGCTACCAGTGGACAAGTTGTATTCATCCCCGAA GAGCAAAATAAAGGAAGAAATTCGGTCGCCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGCCACATGTTCCCcaa ]
[+] EMBL CNS08DLP [ TCAAAACCGTCTTCAGCCATGCCCAGAGCGTCGTAGTGTGTGCCGGCTGCTCAACGATCCTGTGCCAGCCGACCGGCGGCAAGGCGCGTCTGACCGAGGGCTGCTCGTTCCGCA GAAGCCGTACTAATAAGTGTCCGCAACAACACACACACACGGAGAGGAGGACCGAAGGGGCGATCGAACGGGCGCCTTGTGCTGCATGACGGATTGGTTGCCGAA GAGAGCGAGA CAAAGGGAGAGCATCATTCATCTTTAATCACCGGCGCCGTGAATTCAATCCCTTAATTGGGTGATAAACTCATCGCTACCAGTGGACAAGTTGTATTCATCCCCGAA GAGCAAAATAAAGGAAGAAATTCGGTCGCCT AAAAAAAAAAAAAAAAAAAAGGCCAAATGTGCCCGAGCTGTGGG ]
[-] EMBL CNS08YJ3 [ aaaaaaACACACGGAGAGGAGGACCGAAGGGGCGATCGAACGGGCGCCTTGTGCTGCATGACGGATTGGTTGCCGAAGGAGAGCGAGAGCGAAGCGGAAGCATCATTCATCTTTAATCACCGGCGCCGTGAATTCAATCCCTTAATTGGGTGATAAACTCATCGCTACCAGTGG ]
consensusID : consensus_8371#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 373 fasta sequence
[CCGTGCAAAAGGATTTTCTGCTCGTTTTGTTTTTCTTTTGGCAGGATGGGAAAGTATAAAGAAATTGAATTTTGAGAATGTTTTTTGTTCTTCTTGAATTGAAAAATCACTTTAAACATAATTGTTATTCTAAAACTATTTTAACACCACTCCGTTCGATCAATTTTAGTGTTTGCGTGTGTCTCTCAGCAAAGCATTTGCGTGTGTTCCTCCTAACACCACGAGCACGAATTTGTTCAACAGCCCGACACCAAAGGAAAGCGTTCAGCTAACAGCAGCAGCAGCAACTTAGCGGCGGCGGCGGCATCAGCAGCAGCAGCGCAAACAGCAAAAGCGGCGGCGGCGGCATCAGCAGCAGCAGCAGCATTAGCAG]
[+] EMBL BM616291 [CCGTGCAAAAGGATTTTCTGCTCGTTTTGTTTTTCTTTTGGCAGGATGGGAAAGTATAAAGAAATTGAATTTTGAGAATGTTTTTTGTTCTTCTTGAATTGAAAAATCACTTTAAACATAATTGTTATTCTAAAACTATTTTAACACCACTCCGTTCGATCAATTTTAGTGTTTGCGTGTGTCTCTCAGCAAAGCATTTGCGTGTGTTCCTCCTAACACCACGAGCACGAATTTGTTCAACAGCCCGACACCAAAGGAAAGCGTTCAGCTAACAGCAGCAGCAGCAACTTAGCGGCGGCGGCGGCATCAGCAGCAGCAGCGCAAACAGCAAAAGCGGCGGCGGCGGCATCAGCAGCAGCAGCAGCATTAGCAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8371#0 CTACCCCCATTCTTTACATGGTCACATCCAGCATCCAAGGGGAATAGAGAATTGATGTGA 60
consensus_8371#2 ------------------------------------------------------------
consensus_8371#1 -----------------------------------------------AAAATCATATAAA 13
consensus_8371#0 AAGGTATTGTGTGATGCTATTATCGTTAAGGAGTATTTTGTTAAACGTTTTGTTTATTTA 120
consensus_8371#2 ----------------------CCGTGCAAAAGGATTTT-CTGCTCGTTTTGTTTTTCT- 36
consensus_8371#1 AAGCTGCGGAATTCCTCGAGAACTGTTGGCCAACTGGCTTCTTTTCGGTTTTGACGTCGA 73
** * * * ** *** *
consensus_8371#0 GTTTTGCTATATAGCAGGCAACACAACAATATGGGTGATACAGATAGCGTTAGACAAACA 180
consensus_8371#2 -TTTGGCAGGATGGGAAAGTATAAAGAAAT-TGAATTTTGAGAATGTTTTTTGTTCTTCT 94
consensus_8371#1 GCAAAGCTGCCGTGTTTTCTGTACAGCAGATAAAGTGGAATATATTTCACTTTTTCCCCG 133
** * * * * * ** * *
consensus_8371#0 TACAT----------ACACACATACCCACACACTTAATGGTCCATTTTGTGAGAATCCAT 230
consensus_8371#2 TGAAT----------TGAAAAATCACTTTAAACATAATTGT---TATTCTAAAACTATTT 141
consensus_8371#1 CGAATAACACGTGTTTTACGAGAAATAGCAAGTGAAAATGCCGCTCGCCAAGGACTTCTT 193
** * * ** * * * * *
consensus_8371#0 AAGGACCATCCCGAATCTACATATATGTAGCCGTACTGTGGGATCATAATTTACTAGTTT 290
consensus_8371#2 TAACACCACTCCG--TTCGATCAATTTTAGTGTTTGCGTGTGTCTCTCAGCAAAGCATTT 199
consensus_8371#1 GCACCCGCTGCCCGCTGAGGAGAAGAGGAAGCACAAGCTGAAGCGCCTGGTGCCCCATCC 253
* ** * * * ** *
consensus_8371#0 CTTTATCTCCTTTTTACCACTTTCTACCACCACTACAAACTGTTACTGTTACTGTTACTT 350
consensus_8371#2 GCGTGTGTTCCTCCTAACAC-------CACGAGCACGAATT------------------T 234
consensus_8371#1 GAACTCGTACTTCATGG-ACGT-----GAAGTGCCCCGGCTGCTACAAGATCACCACCGT 307
* * * * ** * * * *
consensus_8371#0 TTTTGAG-AAAACAACAACATAAAAAAGTGCTTTTTCATACTCTCATAGTAGTTACGACG 409
consensus_8371#2 GTTCAAC-AGCCCGACACCAAAGGAAAGCG----TTCAG---CTAACAGCAGCAGCAGCA 286
consensus_8371#1 CTTCAGCCATGCCCAGAGCGTCGTAGTGTG---TGCCGGCTGCTCAACGATCCTGTGCCA 364
** * * * * * * * * * ** * * *
consensus_8371#0 CCTAGAGGTTAGAGGTTGTTTATTGTGTTTAATTTATGTTTAGCCTCGAGGGAGTGAGAG 469
consensus_8371#2 ACTTAGCGGCGGCGGCGG--CATCA-GCAGCAGCAGCGCAAACAGCAAAAGCGGCGGCGG 343
consensus_8371#1 GCCGACCGGCGGCAAGGCGCGTCTGACCGAGGGCTGCTCGTTCCGCAGAAGCCGTACTAA 424
* * * * * *
consensus_8371#0 -AGACAGTGAGGATTGAA-TCA-A-ATCAATGGAAAAATGAACCTGCTATGCTATGAGAA 525
consensus_8371#2 -CGGCATCAGCAGCAGCA-GCA-GCATTAGCAG--------------------------- 373
consensus_8371#1 TAAGTGTCCGCAACAACACACACACACGGAGAGGAGGACCGAAGGGGCGATCGAACGGGC 484
* ** * *
consensus_8371#0 TACCGAAATCAAGCGAAAGACTGAGTGGCGTAAAGAATCGGAGATATGCCGAAGCGTATG 585
consensus_8371#2 ------------------------------------------------------------
consensus_8371#1 GCCTTGTGCTGCATGACGGATTGGTTGCCGAAGAGAGCGAGAGCAAAGGGAAAGCATCAT 544
consensus_8371#0 GTTGCGATGCAAAAAATAGAGCGTATGTCAATGGCGAGAAGATTTTGTTCGATGGTCTTC 645
consensus_8371#2 ------------------------------------------------------------
consensus_8371#1 TCATCTTTAATCACCGGCGCCGTGAATTCAATCCCTTAATTGGGTGATAAACTCATCGCT 604
consensus_8371#0 CAGCTTACAGATAGGATAGATAGATAGATAGATAAAGGTTAGGGTAACCCCAAGGAGGGG 705
consensus_8371#2 ------------------------------------------------------------
consensus_8371#1 ACCAGTGGACAAGTTGTATTCATCCCCGAAGAGCAAAATAAAGGAAGAAATTCGGTCGCC 664
consensus_8371#0 TGTGACAATTTCCTGCGAGCCAACCAAAGCCAAGATCGGCAGGATTCCGTCGTCATAGGA 765
consensus_8371#2 ------------------------------------------------------------
consensus_8371#1 TAAAAAAAAAAAAAAAAAAAAAAAAAAAGGCCACATGTGCCCGAGCTGCGGGTTG----- 719
consensus_8371#0 TGGACGCGCCAACTCCTGTATTATTCGGATGATTCACAACGTTTCCGCATAAACAAGGGA 825
consensus_8371#2 ------------------------------------------------------------
consensus_8371#1 ------------------------------------------------------------
consensus_8371#0 GTGAGGCGGGAGTGTTGTAATCAGCATCTAGAATCGTATAAAATCCCTGCCGAACAGCGC 885
consensus_8371#2 ------------------------------------------------------------
consensus_8371#1 ------------------------------------------------------------
consensus_8371#0 CG 887
consensus_8371#2 --
consensus_8371#1 --
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||