cluster # 841

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Anopheles gambiae
cluster # 841 cluster # 841 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_841#0 length = 713 sequences # 1

consensus_841#1 length = 483 sequences # 1

consensusID : consensus_841#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 713
fasta sequence

                              [CCGCGCTAGCAAAATTTCTCCTTTTGTTTTAGTTTTAATTAACAATCCAGATTTATACATAAATCTTATTTTCAGCTAAAACATTAGTGTACCACGATGGAACATCTCGTTTCTCTCGGTCTAAATGAGCAAAAAATCAAGGAAACGCTTAAAAACGCAACCCTTACTAGCACAATTACACGTGCCTTCTCTTACGTCCCGCCGGGTGTGGAGTTAAGTTCAGCACAAAAACCGCTTATATTTCAGGCATGCTCAAAGATAAAACCGCAGACGGCTCACCATTTGGAACTTATAGTGAGAAAAATTTTGGATAACAGTTTGGACACTAGTCTACGTGTTGACACCGCACTGGAATATGTTCTGGCTAACGTGACGAAAGCCACTATCGACGAAGCTACTTTCGATGCGGCTTGCGGTGTGGGAGTAGTTGTGACACCGGAAGAAATCGAGCGGGCGGTTGAAATAACCGTTGCCAAATATCGTAGCGATATCGTCGACCAACGTTATCGTTTTAATGTCGGAAAATTGTTGAGCGAAATTCGAAGTGCTTTGCCATGGGTGGATGGTAAAGCCCTTAAAAGTGAGGTGGATGTGCAAATGTTTGATTTACTTGGCCCCAAAACGGATGCCGATGGCGAGAAAGTGGGTAAAAAACGTCGGGAAACCCCAGCCTCAGATACTGCACCCAAAGCAACCTCTGTCGTTGAACCATC]

[+] EMBL BM652331             [CCGCGCTAGCAAAATTTCTCCTTTTGTTTTAGTTTTAATTAACAATCCAGATTTATACATAAATCTTATTTTCAGCTAAAACATTAGTGTACCACGATGGAACATCTCGTTTCTCTCGGTCTAAATGAGCAAAAAATCAAGGAAACGCTTAAAAACGCAACCCTTACTAGCACAATTACACGTGCCTTCTCTTACGTCCCGCCGGGTGTGGAGTTAAGTTCAGCACAAAAACCGCTTATATTTCAGGCATGCTCAAAGATAAAACCGCAGACGGCTCACCATTTGGAACTTATAGTGAGAAAAATTTTGGATAACAGTTTGGACACTAGTCTACGTGTTGACACCGCACTGGAATATGTTCTGGCTAACGTGACGAAAGCCACTATCGACGAAGCTACTTTCGATGCGGCTTGCGGTGTGGGAGTAGTTGTGACACCGGAAGAAATCGAGCGGGCGGTTGAAATAACCGTTGCCAAATATCGTAGCGATATCGTCGACCAACGTTATCGTTTTAATGTCGGAAAATTGTTGAGCGAAATTCGAAGTGCTTTGCCATGGGTGGATGGTAAAGCCCTTAAAAGTGAGGTGGATGTGCAAATGTTTGATTTACTTGGCCCCAAAACGGATGCCGATGGCGAGAAAGTGGGTAAAAAACGTCGGGAAACCCCAGCCTCAGATACTGCACCCAAAGCAACCTCTGTCGTTGAACCATC]




>consensus_841#0
CCGCGCTAGCAAAATTTCTCCTTTTGTTTTAGTTTTAATTAACAATCCAGATTTATACAT
AAATCTTATTTTCAGCTAAAACATTAGTGTACCACGATGGAACATCTCGTTTCTCTCGGT
CTAAATGAGCAAAAAATCAAGGAAACGCTTAAAAACGCAACCCTTACTAGCACAATTACA
CGTGCCTTCTCTTACGTCCCGCCGGGTGTGGAGTTAAGTTCAGCACAAAAACCGCTTATA
TTTCAGGCATGCTCAAAGATAAAACCGCAGACGGCTCACCATTTGGAACTTATAGTGAGA
AAAATTTTGGATAACAGTTTGGACACTAGTCTACGTGTTGACACCGCACTGGAATATGTT
CTGGCTAACGTGACGAAAGCCACTATCGACGAAGCTACTTTCGATGCGGCTTGCGGTGTG
GGAGTAGTTGTGACACCGGAAGAAATCGAGCGGGCGGTTGAAATAACCGTTGCCAAATAT
CGTAGCGATATCGTCGACCAACGTTATCGTTTTAATGTCGGAAAATTGTTGAGCGAAATT
CGAAGTGCTTTGCCATGGGTGGATGGTAAAGCCCTTAAAAGTGAGGTGGATGTGCAAATG
TTTGATTTACTTGGCCCCAAAACGGATGCCGATGGCGAGAAAGTGGGTAAAAAACGTCGG
GAAACCCCAGCCTCAGATACTGCACCCAAAGCAACCTCTGTCGTTGAACCATC

consensusID : consensus_841#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 483
fasta sequence

                              [CCGACCGAAGAGCTAAAACATTAGTGTACCACGATGGAACATCTCGTTTCTCTCGGGCTAAATGAGCAAAAAATCAAGGAAACGCTTAAAAACGCTACCCTTACTAGCACAATTACACGTGCCTTCTCTTACGTCCCGCCGGGTGTGGAGTTAAGTTCAGCACAAAAACCGCTGATATTTCAGGCATGCTCAAAGATAAAACCGCAGACGGCTCACCATTTGGAACTTATAGTAAGAAAAATTTTGGATAACAGTTTGGACACTAGTCTACGTGTTGACACCGCACTGGAATATGTTCTGGCTAACGTGACGAAAGCCACTATCGACCAAGCTACTTTCGATGCGGCTTGCGGTGTGGGAGTAATTGTGACACCGGAAGAAATCGAGCGGGCGGTTGAAATAACCGTTGCCAAATATCGTAGCGATATCGTCGACCAACGTTATCGTTTTAATGTCGGAAAATTGTTGAGCGAAATTCGAAGT]

[+] EMBL BM616904             [CCGACCGAAGAGCTAAAACATTAGTGTACCACGATGGAACATCTCGTTTCTCTCGGGCTAAATGAGCAAAAAATCAAGGAAACGCTTAAAAACGCTACCCTTACTAGCACAATTACACGTGCCTTCTCTTACGTCCCGCCGGGTGTGGAGTTAAGTTCAGCACAAAAACCGCTGATATTTCAGGCATGCTCAAAGATAAAACCGCAGACGGCTCACCATTTGGAACTTATAGTAAGAAAAATTTTGGATAACAGTTTGGACACTAGTCTACGTGTTGACACCGCACTGGAATATGTTCTGGCTAACGTGACGAAAGCCACTATCGACCAAGCTACTTTCGATGCGGCTTGCGGTGTGGGAGTAATTGTGACACCGGAAGAAATCGAGCGGGCGGTTGAAATAACCGTTGCCAAATATCGTAGCGATATCGTCGACCAACGTTATCGTTTTAATGTCGGAAAATTGTTGAGCGAAATTCGAAGT]




>consensus_841#1
CCGACCGAAGAGCTAAAACATTAGTGTACCACGATGGAACATCTCGTTTCTCTCGGGCTA
AATGAGCAAAAAATCAAGGAAACGCTTAAAAACGCTACCCTTACTAGCACAATTACACGT
GCCTTCTCTTACGTCCCGCCGGGTGTGGAGTTAAGTTCAGCACAAAAACCGCTGATATTT
CAGGCATGCTCAAAGATAAAACCGCAGACGGCTCACCATTTGGAACTTATAGTAAGAAAA
ATTTTGGATAACAGTTTGGACACTAGTCTACGTGTTGACACCGCACTGGAATATGTTCTG
GCTAACGTGACGAAAGCCACTATCGACCAAGCTACTTTCGATGCGGCTTGCGGTGTGGGA
GTAATTGTGACACCGGAAGAAATCGAGCGGGCGGTTGAAATAACCGTTGCCAAATATCGT
AGCGATATCGTCGACCAACGTTATCGTTTTAATGTCGGAAAATTGTTGAGCGAAATTCGA
AGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_841#0      CCGCGCTAGCAAAATTTCTCCTTTTGTTTTAGTTTTAATTAACAATCCAGATTTATACAT 60
consensus_841#1      ------------------------------------------------------------
                                                                                 

consensus_841#0      AAATCTTATTTTCAGCTAAAACATTAGTGTACCACGATGGAACATCTCGTTTCTCTCGGT 120
consensus_841#1      ---CCGACCGAAGAGCTAAAACATTAGTGTACCACGATGGAACATCTCGTTTCTCTCGGG 57
                         *        ********************************************** 

consensus_841#0      CTAAATGAGCAAAAAATCAAGGAAACGCTTAAAAACGCAACCCTTACTAGCACAATTACA 180
consensus_841#1      CTAAATGAGCAAAAAATCAAGGAAACGCTTAAAAACGCTACCCTTACTAGCACAATTACA 117
                     ************************************** *********************

consensus_841#0      CGTGCCTTCTCTTACGTCCCGCCGGGTGTGGAGTTAAGTTCAGCACAAAAACCGCTTATA 240
consensus_841#1      CGTGCCTTCTCTTACGTCCCGCCGGGTGTGGAGTTAAGTTCAGCACAAAAACCGCTGATA 177
                     ******************************************************** ***

consensus_841#0      TTTCAGGCATGCTCAAAGATAAAACCGCAGACGGCTCACCATTTGGAACTTATAGTGAGA 300
consensus_841#1      TTTCAGGCATGCTCAAAGATAAAACCGCAGACGGCTCACCATTTGGAACTTATAGTAAGA 237
                     ******************************************************** ***

consensus_841#0      AAAATTTTGGATAACAGTTTGGACACTAGTCTACGTGTTGACACCGCACTGGAATATGTT 360
consensus_841#1      AAAATTTTGGATAACAGTTTGGACACTAGTCTACGTGTTGACACCGCACTGGAATATGTT 297
                     ************************************************************

consensus_841#0      CTGGCTAACGTGACGAAAGCCACTATCGACGAAGCTACTTTCGATGCGGCTTGCGGTGTG 420
consensus_841#1      CTGGCTAACGTGACGAAAGCCACTATCGACCAAGCTACTTTCGATGCGGCTTGCGGTGTG 357
                     ****************************** *****************************

consensus_841#0      GGAGTAGTTGTGACACCGGAAGAAATCGAGCGGGCGGTTGAAATAACCGTTGCCAAATAT 480
consensus_841#1      GGAGTAATTGTGACACCGGAAGAAATCGAGCGGGCGGTTGAAATAACCGTTGCCAAATAT 417
                     ****** *****************************************************

consensus_841#0      CGTAGCGATATCGTCGACCAACGTTATCGTTTTAATGTCGGAAAATTGTTGAGCGAAATT 540
consensus_841#1      CGTAGCGATATCGTCGACCAACGTTATCGTTTTAATGTCGGAAAATTGTTGAGCGAAATT 477
                     ************************************************************

consensus_841#0      CGAAGTGCTTTGCCATGGGTGGATGGTAAAGCCCTTAAAAGTGAGGTGGATGTGCAAATG 600
consensus_841#1      CGAAGT------------------------------------------------------ 483
                     ******                                                      

consensus_841#0      TTTGATTTACTTGGCCCCAAAACGGATGCCGATGGCGAGAAAGTGGGTAAAAAACGTCGG 660
consensus_841#1      ------------------------------------------------------------
                                                                                 

consensus_841#0      GAAACCCCAGCCTCAGATACTGCACCCAAAGCAACCTCTGTCGTTGAACCATC 713
consensus_841#1      -----------------------------------------------------