cluster # 843

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Anopheles gambiae
cluster # 843 cluster # 843 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_843#0 length = 631 sequences # 1

consensus_843#1 length = 317 sequences # 1

consensusID : consensus_843#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 631
fasta sequence

                              [CCGGGCTATTTCACACAGAATAGAGTCATACAATAGGACAGCAGCGAATCAACTCAGGCGAATTCAAATTTCAGTTCAAATTGTAGCCTAGAGTAATACATTTAAAATGTTTGGAACAAAACAAAACAATTAATTTGAATTCCTAGTATCACTGATGCTGCAAGGAGATCTCAGTATTGGTGTTAACACATGCCTCCATATTTCAATTGTGAATAAAGCTCTGTCTCATGGTGTAATACAATGGTGAAAGGACTCATTTGCTAATTCGGGCACTCAATAACTTCAGTTTTTGCTTCTACAACCGTTTCGTAACAGTAGCTTAAAACAAAAACATACACATCTGCGTACGACTAAACTAACTTGTAAGGAATTGATTTAACCATGAACTAATTCCTTCTTCATAGTTGAACATTTCCATGCTATGATTACTCCTCCCCCTCTTGACTCTTGTTTACCTATGTTTCATCGTTTTAGAACTGTATTCTGAATACTCATTAATTTAACGAAAACAAAAGTCAGTCGAGGCATGAACAATTGATAAATGAGACACACGCACACAACAGCCCCACAAAAACTATCATTTATGTATACAAAATTACAAACATCAATGGCCATTAACCAGATTGCCAGA]

[+] EMBL BM596787             [CCGGGCTATTTCACACAGAATAGAGTCATACAATAGGACAGCAGCGAATCAACTCAGGCGAATTCAAATTTCAGTTCAAATTGTAGCCTAGAGTAATACATTTAAAATGTTTGGAACAAAACAAAACAATTAATTTGAATTCCTAGTATCACTGATGCTGCAAGGAGATCTCAGTATTGGTGTTAACACATGCCTCCATATTTCAATTGTGAATAAAGCTCTGTCTCATGGTGTAATACAATGGTGAAAGGACTCATTTGCTAATTCGGGCACTCAATAACTTCAGTTTTTGCTTCTACAACCGTTTCGTAACAGTAGCTTAAAACAAAAACATACACATCTGCGTACGACTAAACTAACTTGTAAGGAATTGATTTAACCATGAACTAATTCCTTCTTCATAGTTGAACATTTCCATGCTATGATTACTCCTCCCCCTCTTGACTCTTGTTTACCTATGTTTCATCGTTTTAGAACTGTATTCTGAATACTCATTAATTTAACGAAAACAAAAGTCAGTCGAGGCATGAACAATTGATAAATGAGACACACGCACACAACAGCCCCACAAAAACTATCATTTATGTATACAAAATTACAAACATCAATGGCCATTAACCAGATTGCCAGA]




>consensus_843#0
CCGGGCTATTTCACACAGAATAGAGTCATACAATAGGACAGCAGCGAATCAACTCAGGCG
AATTCAAATTTCAGTTCAAATTGTAGCCTAGAGTAATACATTTAAAATGTTTGGAACAAA
ACAAAACAATTAATTTGAATTCCTAGTATCACTGATGCTGCAAGGAGATCTCAGTATTGG
TGTTAACACATGCCTCCATATTTCAATTGTGAATAAAGCTCTGTCTCATGGTGTAATACA
ATGGTGAAAGGACTCATTTGCTAATTCGGGCACTCAATAACTTCAGTTTTTGCTTCTACA
ACCGTTTCGTAACAGTAGCTTAAAACAAAAACATACACATCTGCGTACGACTAAACTAAC
TTGTAAGGAATTGATTTAACCATGAACTAATTCCTTCTTCATAGTTGAACATTTCCATGC
TATGATTACTCCTCCCCCTCTTGACTCTTGTTTACCTATGTTTCATCGTTTTAGAACTGT
ATTCTGAATACTCATTAATTTAACGAAAACAAAAGTCAGTCGAGGCATGAACAATTGATA
AATGAGACACACGCACACAACAGCCCCACAAAAACTATCATTTATGTATACAAAATTACA
AACATCAATGGCCATTAACCAGATTGCCAGA

consensusID : consensus_843#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 317
fasta sequence

                              [CGGGAAACGGATTTTGTTTTATTTTGTATTCTGAATACTCATTAATTTAACTAAAACAAAAGTCAGTCGAGGCATGAACAATTGATAAATGAGACACACGCACACAACAGCCCCACAAAAACTATCATTTATGTATACAAAATTACAAACATCAATGGCCATTAACCAGATTGCCAGAAACAATTTTCATCACACACATCTATATTAAATTTAAAATAATCGGTATAGACGAGACACATATGCAAACGTGAAAACATATAGCGCAAAAACGAAAGACAAAACAATGCATTTGTGTTTACATACATTTCCATCACAAA]

[-] EMBL AGA281368            [CGGGAAACGGATTTTGTTTTATTTTGTATTCTGAATACTCATTAATTTAACTAAAACAAAAGTCAGTCGAGGCATGAACAATTGATAAATGAGACACACGCACACAACAGCCCCACAAAAACTATCATTTATGTATACAAAATTACAAACATCAATGGCCATTAACCAGATTGCCAGAAACAATTTTCATCACACACATCTATATTAAATTTAAAATAATCGGTATAGACGAGACACATATGCAAACGTGAAAACATATAGCGCAAAAACGAAAGACAAAACAATGCATTTGTGTTTACATACATTTCCATCACAAA]




>consensus_843#1
CGGGAAACGGATTTTGTTTTATTTTGTATTCTGAATACTCATTAATTTAACTAAAACAAA
AGTCAGTCGAGGCATGAACAATTGATAAATGAGACACACGCACACAACAGCCCCACAAAA
ACTATCATTTATGTATACAAAATTACAAACATCAATGGCCATTAACCAGATTGCCAGAAA
CAATTTTCATCACACACATCTATATTAAATTTAAAATAATCGGTATAGACGAGACACATA
TGCAAACGTGAAAACATATAGCGCAAAAACGAAAGACAAAACAATGCATTTGTGTTTACA
TACATTTCCATCACAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_843#0      CCGGGCTATTTCACACAGAATAGAGTCATACAATAGGACAGCAGCGAATCAACTCAGGCG 60
consensus_843#1      ------------------------------------------------------------
                                                                                 

consensus_843#0      AATTCAAATTTCAGTTCAAATTGTAGCCTAGAGTAATACATTTAAAATGTTTGGAACAAA 120
consensus_843#1      ------------------------------------------------------------
                                                                                 

consensus_843#0      ACAAAACAATTAATTTGAATTCCTAGTATCACTGATGCTGCAAGGAGATCTCAGTAT-TG 179
consensus_843#1      -------------------------------------CGGGAAACGGATTTTGTTTTATT 23
                                                          * * **   *** *   * * * 

consensus_843#0      GTGTTAACACATGCCTCCATATTTCAATTGTGAATAAAGCTCTGTCTCATGGTGTAATAC 239
consensus_843#1      TTGTATTCTGAATACTCATTAATTTAACTA-AAACAAAAGTCAGT--CGAGGCATGA-AC 79
                      ***   *  *   ***  ** ** ** *   ** ***  ** **  *  **  * * **

consensus_843#0      AATGGTGAAAGGACTCATTTGCTAATT-CGGGCACTCAATAACTTCAGTTTTTGCTT--- 295
consensus_843#1      AATTGATAAATGAGACACACGCACACAACAGCCCCACAAAAACTATCATTTATGTATACA 139
                     *** *  *** **  **   **  *   * * * * *** ****    *** **  *   

consensus_843#0      ---CTACAACCGTTTCGTAACAGTAGCTTAA--AACAAAAACATACACATCTGCGTACGA 350
consensus_843#1      AAATTACAAACATCAATGGCCATTAACCAGATTGCCAGAAACAATTTTCATCACACACAT 199
                         ***** * *       ** ** *   *    ** *****          *  **  

consensus_843#0      CTAAACTAACTTGTAAGGAATTGATTTAACCATGAACTAATTCCTTCTTCATAGTTGAAC 410
consensus_843#1      CTATATTAAATTTAAAATAATCGGT------ATAGACGAGACACATATGCAAACGTGAAA 253
                     *** * *** **  **  *** * *      **  ** *    * * * ** *  **** 

consensus_843#0      ATTTCCA-TGCTATGATTACTCCTCCCCCTCTTGACTCTTGTTTACCTATGTTTCATCGT 469
consensus_843#1      ACATATAGCGCAAAAACGAAAGACAAAACAATGCATTTGTGTTTACATACATTTC--CAT 311
                     *  *  *  ** *  *  *         *  *  * *  ******* **  ****  * *

consensus_843#0      TTTAGAACTGTATTCTGAATACTCATTAATTTAACGAAAACAAAAGTCAGTCGAGGCATG 529
consensus_843#1      CACAAA------------------------------------------------------ 317
                        * *                                                      

consensus_843#0      AACAATTGATAAATGAGACACACGCACACAACAGCCCCACAAAAACTATCATTTATGTAT 589
consensus_843#1      ------------------------------------------------------------
                                                                                 

consensus_843#0      ACAAAATTACAAACATCAATGGCCATTAACCAGATTGCCAGA 631
consensus_843#1      ------------------------------------------