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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8443#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 741 fasta sequence
[GGGATGGTTGGAAGAGATTGTTGTTGTGTAGTGCTGTGTAGTGTTGCTGGCCAAGCCAAGCAAAAGTATTGGATCGTTGGATGTGTATAAGTGTGTGTGTGAGAAAGAGAGAGAATGTGTAGCGATCGACCTAGGAAGGAGGATTTGTTTCTTGTTTATGTTTCTTGTTGTATAACAGATATTTTATTTTTCCACAAAGCTTTGAAAGAGAGAAAATGAGAGAGAGAGAGAGTATATATATACATATAAAGCTATTCACATTATTTGCTTCGCTCGAAAGACAGTTAGAACGGCCAAATCTGGACCGCCTCAAGGAGGTTTACTTAAAAAAACGCCACTAAGCAACACTGGACCAGCGGATGGATCGGCGGCACAGGATGATTGCGCGTGTGTGTGAGAAATTCCTGTCAACGGCCAAGGAGGGTGCGTTTATGGAAGGAGAATTTTATCTTACTTCAATATTTTTTAGATAGCCCGTAAATAGAGAGAGAGAGAGAGAAAGAGCATGAGCCTGCCTGTCTGTTTTGGGCTGGAGGGCGAGGAGGGATGACGGTGCGTGCAGCTGCCCGGTTAGGGCGCTGAGGCTCTTGGCATTACACTTACACTAGATTAGTGCATAGACGGTATGAATTGAAACATTTATTC-TTCAATTTTTCCGCATCATCCTGAGGACATTATTAGCCTTTCTGATAGCGTGTTAGTGCAACCGAACCAGCCGGTACAAACAATAAATGAACTAAA]
[+] EMBL BX608300 [GGGATGGTTGGAAGAGATTGTTGTTGTGTAGTGCTGTGTAGTGTTGCTGGCCAAGCCAAGCAAAAGTATTGGATCGTTGGATGTGTATAAGTGTGTGTGTGAGAAAGAGAGAGAATGTGTAGCGATCGACCTAGGAAGGAGGATTTGTTTCTTGTTTATGTTTCTTGTTGTATAACAGATATTTTATTTTTCCACAAAGCTTTGAAAGAGAGAAAATGAGAGAGAGAGAGAGTATATATATACATATAAAGCTATTCACATTATTTGCTTCGCTCGAAAGACAGTTAGAACGGCCAAATCTGGACCGCCTCAAGGAGGTTTACTTAAAAAAACGCCACTAAGCAACACTGGACCAGCTGATGGATCGGCGGCACAGGATGATTGCGCGTGTGTGTGAGAAATTCCTGTCAACGGCCAAGGAGGGTGCGTTTATGGAAGGAGAATTTTATCTTACTTCAATATTTTTTAGATAGCCCGTAAATAGAGAGAGAGAGAGAGAAAGAGCATGAGCCTGCCTGTCTGTTTTGGGCTGGAGGGCGAGGAGGGATGACGGTGCGTGCAGCTGCCCGGTTAGGGCGCTGAGGCTCTTGGCATTACACTTACACTAGATTAGTGCATAGACGGTATGAATTGAAACATTTATTC TTCAATTTTTCCGCATCATCCTGAGGACATTATTAGC ]
[+] EMBL BX613927 [ TGGATCGTTGGATGTGTATAAGTGTGTGTGTGAGAAAGAGAGAGAATGTGTAGCGATCGACCTAGGAAGGAGGATTTGTTTCTTGTTTATGTTTCTTGTTGTATAACAGATATTTTATTTTTCCACAAAGCTTTGAAAGAGAGAAAATGAGAGAGAGAGAGAGTATATATATACATATAAAGCTATTCACATTATTTGCTTCGCTCGAAAGACAGTTAGAACGGCCAAATCTGGACCGCCTCAAGGAGGTTTACTTAAAAAAACGCCACTAAGCAACACTGGACCAGCGGATGGATCGGCGGCACAGGATGATTGCGCGTGTGTGTGAGAAATTCCTGTCAACGGCCAAGGAGGGTGCGTTTATGGAAGGAGAATTTTATCTTACTTCAATATTTTTTAGATAGCCCGTAAATAGAGAGAGAGAGAGAGAAAGAGCATGAGCCTGCCTGTCTGTTTTGGGCTGGAGGG ]
[+] EMBL BX613926 [ CGTTGGATGTGTATAAGTGTGTGTGTGAGAAAGAGAGAGAATGTGTAGCGATCGACCTAGGAAGGAGGATTTGTTTCTTGTTTATGTTTCTTGTTGTATAACAGATATTTTATTTTTCCACAAAGCTTTGAAAGAGAGAAAATGAGAGAGAGAGAGAGTATATATATACATATAAAGCTATTCACATTATTTGCTTCGCTCGAAAGACAGTTAGAACGGCCAAATCTGGACCGCCTCAAGGAGGTTTACTTAAAAAAACGCCACTAAGCAACACTGGACCAGCGGATGGATCGGCGGCACAGGATGATTGCGCGTGTGTGTGAGAAATTCCTGTCAACGGCCAAGGAGGGTGCGTTTATGGAAGGAGAATTTTATCTTACTTCAATATTTTTTAGATAGCCCGTAAATAGAGAGAGAGAGAGAGAAAGAGCATGAGCCTGCCTGTCTGTTTTGGGCTGGAGGGCGAGGAGGGATGACGGTGCGTGCAGCTGCCCGGTTAGGGCGCTGAGGTTCTTGGCATTACACTTACACTAGATTAGTGCATAGACGGTATGAATTGAAACATTTATTCTTTCAA TTTTCCGCATCATCCTGAGGACATTATTAGCCTTTCTGATAGCGTGTTAGTGCAACCG ]
[+] EMBL BX615506 [ AGAGAGAATGTGTAGCGATCGACCTAGGAAGGAGGATTTGTTTCTTGTTTATGTTTCTTGTTGTATAACAGATATTTTATTTTTCCACAAAGCTTTGAAAGAGAGAAAATGAGAGAGAGAGAGAGTATATATATACATATAAAGCTATTCACATTATTTGCTTCGCTCGAAAGACAGTTAGAACGGCCAAATCTGGACCGCCTCAAGGAGGTTTACTTAAAAAAACGCCACTAAGCAACACTGGACCAGCGGATGGATCGGCGGCACAGGATGATTGCGCGTGTGTGTGAGAAATTCCTGTCAACGGCCAAGGAGGGTGCGTTTATGGAAGGAGAATTTTATCTTACTTCAATATTTTTTAGATAGCCCGTAAATAGAGAGAGAGAGAGAGAAAGAGCATGAGCCTGCCTGTCTGTTTTGGGCTGGAGGGCGAGGAGGGATGACGGTGCGTGCAGCTGCCCGGTTAGGGCGCTGAGGCTCTTGGCATTACACTTACACTAGATTAGTGCATAGACGGTATGAATTGAAACATTTATTC TTCAATTTTTCCGCATCATCCTGAGGACATTATTAGCCTTTCTGATAGCGTGTTAGTGCAACCGAACCAGCCGGTACAAACAATAAAT ]
[+] EMBL BX612142 [ GATTTGTTTCTTGTTTATGTTTCTTGTTGTATAACAGATATTTTATTTTTCCACAAAGCTTTGAAAGAGAGAAAATGAGAGAGAGAGAGAGTATATATATACATATAAAGCTATTCACATTATTTGCTTCGCTCGAAAGACAGTTAGAACGGCCAAATCTGGACCGCCTCAAGGAGGTTTACTTAAAAAAACGCCACTAAGCAACACTGGACCAGCGGATGGATCGGCGGCACAGGATGATTGCGCGTGTGTGTGAGAAATTCCTGTCAACGGCCAAGGAGGGTGCGTTTATGGAAGGAGAATTTTATCTTACTTCAATATTTTTTAGATAGCCCGTAAATAGAGAGAGAGAGAGAGAAAGAGCATGAGCCTGCCTGTCTGTTTTGGGCTGGAGGGCGAGGAGGGATGACGGTGCGTGCAGCTGCCCGGTTAGGGCGCTGAGGCTCTTGGCATTACACTTACACTAGATTAGTGCATAGACGGTATGAATTGAAACATTTATTC TTCAATTTTTCCGCATCATCCTGAGGACATTATTAGCCTTTCTGATAGCGTGTTAGTGCAACCGAACCAGCCGGTACAAAac ]
[+] EMBL BX622254 [ AGGCTCTTGGCATTACACTTACACTAGATTAGTGCATAGACGGTATGAATTGAAACATTTATTC TTCAATTTTTCCGCATCATCCTGAGGACATTATTAGCCTTTCTGATAGCGTGTTAGTGCAACCGAACCAGCCGGTACAAACAATAAATGAACTAAA]
consensusID : consensus_8443#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 580 fasta sequence
[AGGCAGAATCGGCACGNGGATGTTGTTGTGTAGTGCTGTGCTAGTGTTGCTGGCCAAGCCAAGCAAAAGTATTGGATCGTTGGATGTGTATAAGTGTGTGTGTGAGAAAGAGAGAGAATGTGTAGCGATCGACCTAGGAAGGAGAAAAAGAAAGAAAGCGTGAAGGACAACAAGCGCGATCGATCAAACCACATCTCACACGTGGAAATTGAGTGTGTCTGTGTGTTTGAATGTACTGTCTAGGTGTGCGTGTCTACAACAGTCTGTGATCAGTATTACTTACAGGAATGCATCGGAACACAACCGCGCGATGGGGGCAATAAAGAGATGAAGCAACAAAAAAAAAAAAAACAAGAAAACAGGCGCACAGCAAAATGTACTAGGAATTACAAAATCCAGCTCAANAAACAGTTTGAACCGAATTGAGTCTGATCGGTTACCGATCCCGTTATTGGTCTCCCCCATTATTTGGTACCTTCACATCACCTGCAATGGAACGAACGAGCTCACTGACTCCTCATGGTGTAGTAGCATCGGAGGATCAAATAGTTTCATTATTACAGGTCAAACGAGATAGTAT]
[+] EMBL BX467889 [AGGCAGAATCGGCACGNGGATGTTGTTGTGTAGTGCTGTGCTAGTGTTGCTGGCCAAGCCAAGCAAAAGTATTGGATCGTTGGATGTGTATAAGTGTGTGTGTGAGAAAGAGAGAGAATGTGTAGCGATCGACCTAGGAAGGAGAAAAAGAAAGAAAGCGTGAAGGACAACAAGCGCGATCGATCAAACCACATCTCACACGTGGAAATTGAGTGTGTCTGTGTGTTTGAATGTACTGTCTAGGTGTGCGTGTCTACAACAGTCTGTGATCAGTATTACTTACAGGAATGCATCGGAACACAACCGCGCGATGGGGGCAATAAAGAGATGAAGCAACAAAAAAAAAAAAAACAAGAAAACAGGCGCACAGCAAAATGTACTAGGAATTACAAAATCCAGCTCAANAAACAGTTTGAACCGAATTGAGTCTGATCGGTTACCGATCCCGTTATTGGTCTCCCCCATTATTTGGTACCTTCACATCACCTGCAATGGAACGAACGAGCTCACTGACTCCTCATGGTGTAGTAGCATCGGAGGATCAAATAGTTTCATTATTACAGGTCAAACGAGATAGTAT]
consensusID : consensus_8443#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 578 fasta sequence
[CCGCTATTCTCCATAATTCTTCTCTTCTTTAAAGGGAAGGAGAGAGCGAGTGAGAGGGAGAGAAATACAGAAAGGGAAATATGAGAGAGAGAGAGAGAGAGAGAGAAAGAGAGAAAGAAAAAGAAAGAAAGCGTGAAGGACAACAAGCGCGATCGATCAAACCACATCTCACACGTGGAAATTGAGTGTGTCTGTGTGTTTGAATGTATGTCTAGGTGTGCGTGTCTACAACAGTCTGTGATCAGTATTACTTACAGGAATGCATCGGAACACAACCGCGCGATGGGGGCAATAAAGAGATGAATCAACAAAAAAAAAAAAAACAAAAAACAGGCGCACAGCAAAATGTACTAGAATTACAAAATCCACTCAAAAACAGTTTGAACCGAATTGATCTGATCGGTTACCGATCCCTTATTGGTCTCCCCCATTATTTTGTACCTTCACATCACCTGCAATGGAACGAACGAGCTCATGACTCCTCATGGTGTAGTAGCATCGGAGGGATCAAATAGTTTCATTATTACAGCTCAAACGAGATAAATATCAAAAATGGTGTATTTTTGTGACCTATTTAA]
[+] EMBL BM635552 [CCGCTATTCTCCATAATTCTTCTCTTCTTTAAAGGGAAGGAGAGAGCGAGTGAGAGGGAGAGAAATACAGAAAGGGAAATATGAGAGAGAGAGAGAGAGAGAGAGAAAGAGAGAAAGAAAAAGAAAGAAAGCGTGAAGGACAACAAGCGCGATCGATCAAACCACATCTCACACGTGGAAATTGAGTGTGTCTGTGTGTTTGAATGTATGTCTAGGTGTGCGTGTCTACAACAGTCTGTGATCAGTATTACTTACAGGAATGCATCGGAACACAACCGCGCGATGGGGGCAATAAAGAGATGAATCAACAAAAAAAAAAAAAACAAAAAACAGGCGCACAGCAAAATGTACTAGAATTACAAAATCCACTCAAAAACAGTTTGAACCGAATTGATCTGATCGGTTACCGATCCCTTATTGGTCTCCCCCATTATTTTGTACCTTCACATCACCTGCAATGGAACGAACGAGCTCATGACTCCTCATGGTGTAGTAGCATCGGAGGGATCAAATAGTTTCATTATTACAGCTCAAACGAGATAAATATCAAAAATGGTGTATTTTTGTGACCTATTTAA]
[+] EMBL BX618686 [ GAAAGGGAAATATGAGAGAGAGAGAGAGAGAGAGAGAAAGAGAGAAAGAAAAAGAAAGAAAGCGTGAAGGACAACAAGCGCGATCGATCAAACCACATCTCACACGTGGAAATTGAGTGTGTCTGTGTGTTTGAATGTATGTCTAGGTGTGCGTGTCTACAACAGTCTGTGATCAGTATTACTTACAGGAATGCATCGGAACACAACCGCGCGATGGGGGCAATAAAGAGATGAAGCAACAAAAAAAAAAAAAACAAAAAACAGGCGCACAGCAAAATGTACTAGAATTACAAAATCCACTCAAAAACAGTTTGAACCGAATTGATCTGATCGGTTACCGATCCCTTATTGGTCTCCCCCATTATTTTGTACCTTCACATCACCTGCAATGGAACGAACGAGCTCATGACTCCTCATGGTGTAGTAGCATCGGAGGGATCAAATAGTTTCATTATT ]
consensusID : consensus_8443#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 117 fasta sequence
[CAGAGACATANCGAGCATGAGCCTGCCTGTCTGTTTTGGGCTGGAGGGCGAGGANGGATGACGGCGCTTGCNCCTGNCCCGCTAGGGCGCTCNGGCTCTTGGCATTACACTTACACT]
[+] EMBL BX621769 [CAGAGACATANCGAGCATGAGCCTGCCTGTCTGTTTTGGGCTGGAGGGCGAGGANGGATGACGGCGCTTGCNCCTGNCCCGCTAGGGCGCTCNGGCTCTTGGCATTACACTTACACT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8443#0 --GGGATGGTTGGAAGAGATTGTTGTTGTGTAGTGCTGTG-TAGTGTTGCTGGCCAAGCC 57
consensus_8443#3 ------------------------------------------------------------
consensus_8443#1 AGGCAGAATCGGCACGNGGATGTTGTTGTGTAGTGCTGTGCTAGTGTTGCTGGCCAAGCC 60
consensus_8443#2 -------------------CCGCTATTCTCCATAATTCTTCTCTTCTTTAAAGGGAAG-- 39
consensus_8443#0 AAGCAAAAGTATTGGATCGTTGGATGTGTATAAGTGTGTGTGTGAGAAAGAGAGAGAATG 117
consensus_8443#3 ------------------------------------------------------------
consensus_8443#1 AAGCAAAAGTATTGGATCGTTGGATGTGTATAAGTGTGTGTGTGAGAAAGAGAGAGAATG 120
consensus_8443#2 GAGAGAGCGAGTGAGAGGGAGAGAAATACAGAAAGGGAAATATGAGAGAGAGAGAGAGAG 99
consensus_8443#0 TGTAGCGATCGACCTAGGAAGGAGGATTTGTTTCTTGTTTATGTTTCTTGTTGTATAACA 177
consensus_8443#3 ------------------------------------------------------------
consensus_8443#1 TGTAGCGATCGACCTAGGAAGGAGAAAAAGAA--------AGAAAGCGTGAAGGACAACA 172
consensus_8443#2 AG-AGAGAAAGA-----GAGAAAGAAAAAGAA--------AGAAAGCGTGAAGGACAACA 145
consensus_8443#0 GATATTTTATTTTTCCACAAAGCTTTGAAAGAGAGAAAATGAGAGAGAGAGAGAGTATAT 237
consensus_8443#3 ------------------------------------------------------------
consensus_8443#1 AGCGCG--ATCGATCAAACCACATCTCACACGTGGAAATTGAGTGTGTCTGTGTGTTTGA 230
consensus_8443#2 AGCGCG--ATCGATCAAACCACATCTCACACGTGGAAATTGAGTGTGTCTGTGTGTTTGA 203
consensus_8443#0 ATATA-CATATAAAGCTATTCACATTATTTGCTTCGCTCGAAAGACAGTTAGAACGGCCA 296
consensus_8443#3 ------------------------------------------------------------
consensus_8443#1 ATGTACTGTCTAGGTGTGCGTGTCTACAACAGTCTGTGATCAGTATTACTTACAGGAATG 290
consensus_8443#2 ATGTA-TGTCTAGGTGTGCGTGTCTACAACAGTCTGTGATCAGTATTACTTACAGGAATG 262
consensus_8443#0 AATCTGGACCGCCTCAAGGAGGTTTACTTAAAAAAACGCCACTAAGCAACACTGGACCAG 356
consensus_8443#3 ------------------------------------------------------------
consensus_8443#1 CATCGGAACACAACCGCGCGATGGGGGCAATAAAGAGATGAAGCAACAAAAAAAAAAAAA 350
consensus_8443#2 CATCGGAACACAACCGCGCGATGGGGGCAATAAAGAGATGAATCAACAAAAAAAAAAAAA 322
consensus_8443#0 CGGATGGATCGGCGGCACAGGATGATTGCGCGTGTGTGTGAGAAATTCCTGTCAACGGCC 416
consensus_8443#3 ------------------------------------------------------------
consensus_8443#1 ACAAGAAAACAGGCGCACAGCAAAAT-GTACTAGGAATTACAAAATCCAGCTCAANAAAC 409
consensus_8443#2 ACAA-AAAACAGGCGCACAGCAAAAT-GTACTAG-AATTACAAAATCCA-CTCAAAAA-C 377
consensus_8443#0 AAGGAGGGTGCGTTTATGGAAGGAGAATTTT--ATCTTACTTCAATATTTTTTAGATAGC 474
consensus_8443#3 ------------------------------------------------------------
consensus_8443#1 AGTTTGAACCGAATTGAGTCTGATCGGTTACCGATCCCGTTATTGGTCTCCCCCATTATT 469
consensus_8443#2 AGTTTGAACCGAATTGA-TCTGATCGGTTACCGATCCC-TTATTGGTCTCCCCCATTATT 435
consensus_8443#0 CCGTAAATAGAGAGAGAGAGAGAGAAAGAGCATGAGCCTGCCTGTCTGTTTTGGGCTGGA 534
consensus_8443#3 ---------------CAGAGACATANCGAGCATGAGCCTGCCTGTCTGTTTTGGGCTGGA 45
consensus_8443#1 TGGTACCTTCACATCACCTGCAATGGAACGAACGAGCTCACTGACTCCTCATGGTGTAGT 529
consensus_8443#2 TTGTACCTTCACATCACCTGCAATGGAACGAACGAGCTCA-TGACTCCTCATGGTGTAGT 494
* * * * **** * *** * *
consensus_8443#0 GGGCGAGGAGGGATGACGGTGCGTGCAGCTGCCCGGTTAGGGCGCTGAGGCTCTTGGCAT 594
consensus_8443#3 GGGCGAGGANGGATGACGGCGCTTGCNCCTGNCCCGCTAGGGCGCTCNGGCTCTTGGCAT 105
consensus_8443#1 AGCATCGGAGG-ATCA-AATAGTTTCATTATTACAGGTCAAACGAGATAG-TAT------ 580
consensus_8443#2 AGCATCGGAGGGATCA-AATAGTTTCATTATTACAGCTCAAACGAGATAAATATCAAAAA 553
* *** * ** * * * * * * ** * *
consensus_8443#0 TACACTTACACTAGATTAGTGCATAGACGGTATGAATTGAAACATTTATTCTTCAATTTT 654
consensus_8443#3 TACACTTACACT------------------------------------------------ 117
consensus_8443#1 ------------------------------------------------------------
consensus_8443#2 TGGTGTATTTTTGTGACCTATTTAA----------------------------------- 578
consensus_8443#0 TCCGCATCATCCTGAGGACATTATTAGCCTTTCTGATAGCGTGTTAGTGCAACCGAACCA 714
consensus_8443#3 ------------------------------------------------------------
consensus_8443#1 ------------------------------------------------------------
consensus_8443#2 ------------------------------------------------------------
consensus_8443#0 GCCGGTACAAACAATAAATGAACTAAA 741
consensus_8443#3 ---------------------------
consensus_8443#1 ---------------------------
consensus_8443#2 ---------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||