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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8461#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1989 fasta sequence
[AAGATGCTCGACTCGAAGGTGAATTATTATACCGGATAATCGCCAAGGGCGGACAACGATCTCGAAGACGGACTGCCAAGTTTAAGGCGAAGATTAACGAGGAGTTGCGCGCGAAACGGTGTCCAGATCTACCAGTTCCCGACCGACGACGAATCGTGCCGGAGGTAAACACCACCATGAACTCGCACATCCCGTTTGCCGTCGTGGCAGTACGGACTTTGTGCGCTCGCAACAAGACGGTCGGCCCCCAGTACCCTGGGTACG-CA-GTGGAGAACGAGGCGCACTGCGACTTTGTGAAGCTGCGCGAAATGCTTATCCGCACCAACATGGAGGATATGCGCGAGAAGACGCACACGCGCCA-TACGAGCTGTACCGGCAGAAGCGGCTGGAGGAGATGGGCTTCACCGATGTGGACAGCGATAACAAGCCGGTCTCGTTCCAGCAAACGTTCGAGGCGAAGCGTAGCAACCATTTGGCCGAGCTGCAGGCGAAGGAGGACGAGGTGCGTCAGATGTTTGTGGTGCGCGTCAAGGAGAAGGAGGCGGAGTTGAAGGAGAGCGAAAAGGAGCTCCATGCCAAATTCGACAAGCTGAAGAAGGACCATGCCGAGGAGAAGCGCAAGCTGGAGGAGCCGCGCAAAAAGCTGGAGGAAGAGTTCGTCGAGTTTAACCGGCGCAAGTCGCAGATGACGGCACACCAC-GACTGACGCTGGGCAAGAGCAAAAAGAAATGAACGACCTAAAGAGGGGCGCTTCTGGTGGTGGTTGTGGGGAGAGCGCCTTCCAGTGAATTTCCCTTTTTTGCCGTTGATTCTCATTGCGTGTGCTTTTGCTCTATTATCTCTCTATGGTTGCAGGACTGAAAAGGCTTGCTTTCAACAATCCCCAGGAAGAGGTTTTTTTTTTGTTTCTATAATGCAAAAAGCGCAATTTTTATTCAC-TTTACCACCATCTTTCCCATGTGTATTAACTTCAAATAATATTTTTTAGGCTTGAAAGTATTTCGTTAAGTTAACTGATTTCATTAAACCCGTTTTCGTTACAACCGAAGC--AGTAAAAAAGCTTTTGCTTAGGAAAGTAAGGAAAACTATCGAACCAAAACAAAGAAGAAACCGAAACAAACGTGCAAAGTTTTTACTAGCAACAATACAACAAAACGAAGCAAAACAAAAGTGTAATGTTAAGAACATTGAACATGTAAAATCTTCAGAAAGGAAATCGTTTTAAACTGAACAAGGAGTAGAGAACGCATAGCCAAAACTAGTATTGCAGTAGGACAAGCGAAACGGAGGATAACAAAGGGTTAGAAGATTTTCTTTTAGCAAAAAGGATTTAGGAAAACGATTTATTCTTGGAAAAGATGCTTCACGTACAAACTATGGCTTTCTCGTAGTAGCTGCCCTGGTTAATAGATAGAGTTTTACCTGCTCAACCAAAAAAAGAAGCAAAAAGGAGATTAACGAAGGAAGAACAAAATTCACCTAACAAAAAAAAAGTAGCGCGATATCAATTTTAGTTGAAGCATAACGTTCCGACCGACGAAACCAGCCACAAGCCAGTCTCACGTTGAAAATGAACGGTTACAGCACGGAAAATGCGATATAAACAGGGTGAGGATTAGGCAATCGACAACCATGTTTGTCCCCGCCTTTAACGTGTCTGCCGTTCGGTGAAACTGTGTCCATTTGTGCGTTCGTAATTATAAAAATGCTTGAAACAAAAGCCAAACCCGTTCCACGTTCTTTATCGGTTAGATCAAATGCAACCGTTTTAAATTGGTCTACTCATCGCTTTATTTTAAAATCAAAAGCACACGAAAAGCAAGCAAGAATTACAGAAAAAGTTAAGAGAAAAACATATAAGTGGAGCAAACGAGAAAGAAGCGACCAAATTTTATTTACTTATTTTTCGGTTTTGATTGACAATGCTTAACCGCAAAATTGCCGGCAGAGTTTTTATCCGGAGGCTACGTGTCACAACCACGTCTGTCT]
[-] EMBL AL695162 [AAGATGCTCGACTCGAAGGTGAATTATTATACCGGATAATCGCCAAGGGCGGACAACGATCTCGAAGACGGACTGCCAAGTTTAAGGCGAAGATTAACGAGGAGTTGCGCGCGAAACGGTGTCCAGATCTACCAGTTCCCGACCGACGACGAATCGTGCCGGAGGTAAACACCACCATGAACTCGCACATCCCGTTTGCCGTCGTGGCAGTACGGACTTTGTGCGCTCGCAACAAGACGGTCGGCCCCCAGTACCCTGGGTACGTCA GTGGAGAACGAGGCGCACTGCGACTTTGTGAAGCTGCGCGAAATGCTTATCCGCACCAACATGGAGGATATGCGCGAGAAGACGCACACGCGCCA TACGAGCTGTACCGGCAGAAGCGGCTGGAGGAGATGGGCTTCACCGATGTGGACAGCGATAACAAGCC GTCTCGTTCCAGCAAACGTTCGA GCGAAGCGTA CAACCATT GCCGAG TGCAGcanacctc ]
[-] EMBL CNS09O0K [ tG CAGGTGGAGAACGAGGCGCACTGCGACTTTGTGAAAGTGCGCGAAATGCTTATCCGCACCAACATGGAGGATATGCGCGAGAAGACGCACACGCGCCACTATGAGCTGTACCGGCAGAAGCGGCTGGAGGAGATGGGCTTCACCGATGTGGACAGCGATAACAAGCCGGTCTCGTTCCAGCAAACGTTCGAGGCGAAGCGTAGCAACCATTTGGCCGAGCTGCAGGCGAAGGAGGACGAGGTGCGTCAGATGTTTGTGGTGCGCGTCAAGGAGAAGGAGGCGGAGTTGAAGGAGAGCGAAAAGGAGCTCCATGCCAAATTCGACAAGCTGAAGAAGGACCATGCCGAGGAGAAGCGCAAGCTGGAGGAGCCGCGCAAAAAGCTGGAGGAAGAGTTCGTCGAGTTTAACCGGCGCAAGTCGCAGATGACGGCACACCAC GACTGACGCTGGGCAAGAGCAAAAAGAAATGAACGACCTAAAGAGGGGCGCTTCTGGTGGTGGTTGTGGGGAGAGCGCCTTCCAGTGAATTTCCCTTTTTTGCCGTTGATTCTCATTGCGTG ]
[+] EMBL BM616039 [ ccgGCGGCTGGAGGAGATGGGCTTCACCGATGTGGACAGCGATAACAAGCCGGTCTCGTTCCAGCAAACGTTTGAGGCGAAGCGTAGCAACCATTTGGCCGAGCTGCAGGCGAAGGAGGACGAGGTGCGTCAGATGTTTGTGGTGCGCGTCAAGGAGAAGGAGGCGGAGTTGAAGGAGAGCGAAAAGGAGCTCCATGCCAAATTCGACAAGCTGAAGAAGGACCATGCCGAGGAGAAGCGCAAGCTGGAGGAGTCGCGCAAAAAGCTGGAGGAAGAGTTCGTCGAGTTTAACCGGCGCAAGTCGCAGATGACGGCACACCACACGCTGACGCTGGGCAAGAGCAAAAAGAAATGAACGAGCTAAAGAGGGGCGCTTCTGGTAGTGGTTGTGGGGAGAGCGCCTTCCAGTGAACTTCACTTTTTTGCCGTTGATTCTCATTGCGTGTGCTTTTGCTCTATTATCTCTCTATGGTTGCAGGACTGAAAAGGCTTGCTTTCAACAATCCCCAGGAAGAGGTTTTTTTTTTGTTTCTATAATGCAAAAAGCGCAATTTTTATTCAC TTTACCACCATCTTTCCCATGTGTATTAACTTCAAATAATATTTTTTAGGCTTGAAAGTATTTCGTTAAGTTAACTGATTTCATTAAACCCGTTTTCGTTACAACCGAAGC AGTAAAAAAGCTTTTGCTT ]
[-] EMBL AGA283230 [ GCTTTTGCTCTATTATCTCTCTATGGTTGCAGGACTGAAAAGGCTTGCTTTCAACAATCCCGAGGAAGAGG TTTTTTTTGTTTCTATAATGCAAAAAGCGCAATTTTGATTCACTTTTTCCACCATCTTTCTCATGTGTATTAACTTCAAACAATATTTTTTAGGCTTGAAAGTATTTCGTAAAGTTAACTGATTTCATTAAACCCGTTTTCGTTACAACCGAAGCAGAGTAGACAAGCTTTTGCGTAGGAAAGTAAGGAAAACTATCGAACCAAAACAAAGAAGAAACCGAAACAAACGTGCAAAGTTTTTACTAGCAACAATACAACAAAACGAAGCAAAACAAAAGTGTAATGTTAAGAACATTGAACATGTAAAATCTTCAGAAAGGAAATCGTTTTAAACTGAACAAGGAGTAGAGAACGCATAGCCAAAACTAGTATTGCAGTAGGACAAGCGAAACGGAGGATAACAAAGGGTTAGAAGATTTTCTTTTAGCAAAAAG ]
[+] EMBL AGA280935 [ ACTAGCAACAATACAACAAAACGAAGCAAAACAAAAGTGTAATGTTAAGAACATTGAACATGTAAAATCTTCAGAAAGGAAATCGTTTTAAACTGAACAAGGAGTAGAGAACGCATAGCCAAAACTAGTATTGCAGTAGGACAAGCGAAACGGAGGATAACAAAGGGTTAGAAGATTTTCTTTTAGCAAAAAGGATTTAGGAAAACGATTTATTCTTGGCAAAGATGCTTCATGTACAAACTATGGCTTTCTCGTAGTAGC ]
[+] EMBL BM638570 [ ccgGAACAAGGAGTAGAGAACGCATAGCCAAAACTAGTATTGCAGTAGGACAAGCGAGACGGAGGATAACAAAGGGTTAGAAGATTTTCTTTTAGCAAAAAGGATTTAGGAAAACGATTTATTCTTGGAAAAGATGCTTCACGTACAAACTATGGCTTTCTCGTAGTAGCTGCCCTGGTTAATAGATAGAGTTTTACCTGCTCAACCAAAAAAAGAAGCAAAAAGGAGATTAACGAAGGAAGAACAAAATTCACCTAACAAAAAAAAAGTAGCGCGATATCAATTTTAGTTGAAGCATAACGTTCCGACCGACGAAACCAGCCACAAGCCAGTCTCACGTTGAAAATGAACGGTTACAGCACGGAAAATGCGATATAAACAGGGTGAGGATTAGGCAATCGACAACCATGTTTGTCCCCGCCTTTAACGTGTCTGCCGTTCGGTGAAACTGTGTCCATTTGTGCGTTCGTAATTATAAAAATGCTTGAAACAAAAGCCAAACCCGTTCCACGTTCTTTATCGGTTAGATCAAATGCAACCGTTTTAAATTGGTCTACTCATCGCTTTATTTTAAAATCAAAAGCACACGAAAAGCAAGCAAGAATTACAGAAAAAGTTAAGAGAAAAACATATAAGTGGAG ]
[+] EMBL BM582207 [ ccgGGAGGATAACAAAGGGTTAGAAGATTTTCTTTTAGCAGAAAGGATTTAGGAAAACGATTTATTCTTGGAAAAGATGCTTCACGTACAAACTATGGCTTTCTCGTAGTAGCTGCCCTGGTTAATAGATAGAGTTTTACCTGCTCAACCAAAAAAAGAAGCAAAAAGGAGATTAACGAAGGAAGAACAAAATTCACCTAACAAAAAAAAAGTAGCGCGATATCAATTTTAGTTGAAGCATAACGTTCCGACCGACGAAACCAGCCACAAGCCAGTCTCACGTTGAAAATGAACGGTTACAGCACGGAAAATGCGATATAAACAGGGTGAGGATTATGCAATCGACAACCATGTTTGTCCCCGCCTTTAACGTGTCTGCCGTTCGGTGAAACTGTGTCCATTTGTGCGTTCGTAATTATAAAAATGCTTGAAACAAAAGCCAAACCCGTTCCACGTTCTTTATCGGTTAGATCAAATGCAACCGTTTTAAATTGGTCTACTCATCGCTTTATTTTAAAATCAAAAGCgc ]
[-] EMBL CNS09BJF [ CGTAGTAGCTGCACTGGTTAATAGATAGAGTTATACTTGCTCAACCAAAAAAAGAAGCAAAAAGGAGATTAACGAAGGAAGAACAAAATTCACC ]
[-] EMBL AGA282564 [ TGTCTGCCGTTCGGTGAAACTGTGTCCATTTGTGCGTTCGTAATTATAAAAATGCTTGAAACAAAAGCCAAACCCGTTCCACGTTCTTTATCGGTTAGATCAAATGCAACCGTTTTAAATTGGTCTACTCATCGCTTTATTTTAAAATCAAAAGCACACGAAAAGCAAGCAAGAATTACAGAAAAAGTTAAGAGAAAAACATATAAGTGGAGCAAACGAGAAAGAAGCGACCAAATTTTATTTACTTATTTTTCGGTTTTGATTGACAATGCTTAACCGCAAAATTGCCGGCAGAGTTTTTATCCGGAGGCTACGTGTCACAACCACGTCTGTCT]
consensusID : consensus_8461#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 223 fasta sequence
[GGCGAAGATTAACGAGGAGTTGCGCGCGAACGGCGTCCAGATCTACCAGTTCCCGACCGACGACGAATCGGTGGCGGAGGTGAACACCACCATGAACTCGCACATCCCGTTTGCCGTCGTGGGCAGTACGGACTTTGTGCGCGTCGGCAACAAAACGGTGCGAGCCCGCCAGTACCCGTGGGGTACGGTGCAGGTGGAGAACGAGGCGCACTGCGACTTTGTG]
[+] EMBL CNS09BJE [GGCGAAGATTAACGAGGAGTTGCGCGCGAACGGCGTCCAGATCTACCAGTTCCCGACCGACGACGAATCGGTGGCGGAGGTGAACACCACCATGAACTCGCACATCCCGTTTGCCGTCGTGGGCAGTACGGACTTTGTGCGCGTCGGCAACAAAACGGTGCGAGCCCGCCAGTACCCGTGGGGTACGGTGCAGGTGGAGAACGAGGCGCACTGCGACTTTGTG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8461#0 AAGATGCTCGACTCGAAGGTGAATTATTATACCGGATAATCGCCAAGGGCGGACAACGAT 60
consensus_8461#1 ------------------------------------------------------------
consensus_8461#0 CTCGAAGACGGACTGCCAAGTTTAAGGCGAAGATTAACGAGGAGTTGCGCGCGAAACGGT 120
consensus_8461#1 -------------------------GGCGAAGATTAACGAGGAGTTGCGCGCGAA-CGGC 34
****************************** ***
consensus_8461#0 GTCCAGATCTACCAGTTCCCGACCGACGACGAATCG-TGCCGGAGGTAAACACCACCATG 179
consensus_8461#1 GTCCAGATCTACCAGTTCCCGACCGACGACGAATCGGTGGCGGAGGTGAACACCACCATG 94
************************************ ** ******* ************
consensus_8461#0 AACTCGCACATCCCGTTTGCCGTCGTGG-CAGTACGGACTTTGTGCGCTC--GCAACAAG 236
consensus_8461#1 AACTCGCACATCCCGTTTGCCGTCGTGGGCAGTACGGACTTTGTGCGCGTCGGCAACAAA 154
**************************** ******************* *******
consensus_8461#0 ACGGTCGG---CCCCCAGTACCCT--GGGTACGC----AGTGGAGAACGAGGCGCACTGC 287
consensus_8461#1 ACGGTGCGAGCCCGCCAGTACCCGTGGGGTACGGTGCAGGTGGAGAACGAGGCGCACTGC 214
***** * ** ********* ******* *********************
consensus_8461#0 GACTTTGTGAAGCTGCGCGAAATGCTTATCCGCACCAACATGGAGGATATGCGCGAGAAG 347
consensus_8461#1 GACTTTGTG--------------------------------------------------- 223
*********
consensus_8461#0 ACGCACACGCGCCATACGAGCTGTACCGGCAGAAGCGGCTGGAGGAGATGGGCTTCACCG 407
consensus_8461#1 ------------------------------------------------------------
consensus_8461#0 ATGTGGACAGCGATAACAAGCCGGTCTCGTTCCAGCAAACGTTCGAGGCGAAGCGTAGCA 467
consensus_8461#1 ------------------------------------------------------------
consensus_8461#0 ACCATTTGGCCGAGCTGCAGGCGAAGGAGGACGAGGTGCGTCAGATGTTTGTGGTGCGCG 527
consensus_8461#1 ------------------------------------------------------------
consensus_8461#0 TCAAGGAGAAGGAGGCGGAGTTGAAGGAGAGCGAAAAGGAGCTCCATGCCAAATTCGACA 587
consensus_8461#1 ------------------------------------------------------------
consensus_8461#0 AGCTGAAGAAGGACCATGCCGAGGAGAAGCGCAAGCTGGAGGAGCCGCGCAAAAAGCTGG 647
consensus_8461#1 ------------------------------------------------------------
consensus_8461#0 AGGAAGAGTTCGTCGAGTTTAACCGGCGCAAGTCGCAGATGACGGCACACCACGACTGAC 707
consensus_8461#1 ------------------------------------------------------------
consensus_8461#0 GCTGGGCAAGAGCAAAAAGAAATGAACGACCTAAAGAGGGGCGCTTCTGGTGGTGGTTGT 767
consensus_8461#1 ------------------------------------------------------------
consensus_8461#0 GGGGAGAGCGCCTTCCAGTGAATTTCCCTTTTTTGCCGTTGATTCTCATTGCGTGTGCTT 827
consensus_8461#1 ------------------------------------------------------------
consensus_8461#0 TTGCTCTATTATCTCTCTATGGTTGCAGGACTGAAAAGGCTTGCTTTCAACAATCCCCAG 887
consensus_8461#1 ------------------------------------------------------------
consensus_8461#0 GAAGAGGTTTTTTTTTTGTTTCTATAATGCAAAAAGCGCAATTTTTATTCACTTTACCAC 947
consensus_8461#1 ------------------------------------------------------------
consensus_8461#0 CATCTTTCCCATGTGTATTAACTTCAAATAATATTTTTTAGGCTTGAAAGTATTTCGTTA 1007
consensus_8461#1 ------------------------------------------------------------
consensus_8461#0 AGTTAACTGATTTCATTAAACCCGTTTTCGTTACAACCGAAGCAGTAAAAAAGCTTTTGC 1067
consensus_8461#1 ------------------------------------------------------------
consensus_8461#0 TTAGGAAAGTAAGGAAAACTATCGAACCAAAACAAAGAAGAAACCGAAACAAACGTGCAA 1127
consensus_8461#1 ------------------------------------------------------------
consensus_8461#0 AGTTTTTACTAGCAACAATACAACAAAACGAAGCAAAACAAAAGTGTAATGTTAAGAACA 1187
consensus_8461#1 ------------------------------------------------------------
consensus_8461#0 TTGAACATGTAAAATCTTCAGAAAGGAAATCGTTTTAAACTGAACAAGGAGTAGAGAACG 1247
consensus_8461#1 ------------------------------------------------------------
consensus_8461#0 CATAGCCAAAACTAGTATTGCAGTAGGACAAGCGAAACGGAGGATAACAAAGGGTTAGAA 1307
consensus_8461#1 ------------------------------------------------------------
consensus_8461#0 GATTTTCTTTTAGCAAAAAGGATTTAGGAAAACGATTTATTCTTGGAAAAGATGCTTCAC 1367
consensus_8461#1 ------------------------------------------------------------
consensus_8461#0 GTACAAACTATGGCTTTCTCGTAGTAGCTGCCCTGGTTAATAGATAGAGTTTTACCTGCT 1427
consensus_8461#1 ------------------------------------------------------------
consensus_8461#0 CAACCAAAAAAAGAAGCAAAAAGGAGATTAACGAAGGAAGAACAAAATTCACCTAACAAA 1487
consensus_8461#1 ------------------------------------------------------------
consensus_8461#0 AAAAAAGTAGCGCGATATCAATTTTAGTTGAAGCATAACGTTCCGACCGACGAAACCAGC 1547
consensus_8461#1 ------------------------------------------------------------
consensus_8461#0 CACAAGCCAGTCTCACGTTGAAAATGAACGGTTACAGCACGGAAAATGCGATATAAACAG 1607
consensus_8461#1 ------------------------------------------------------------
consensus_8461#0 GGTGAGGATTAGGCAATCGACAACCATGTTTGTCCCCGCCTTTAACGTGTCTGCCGTTCG 1667
consensus_8461#1 ------------------------------------------------------------
consensus_8461#0 GTGAAACTGTGTCCATTTGTGCGTTCGTAATTATAAAAATGCTTGAAACAAAAGCCAAAC 1727
consensus_8461#1 ------------------------------------------------------------
consensus_8461#0 CCGTTCCACGTTCTTTATCGGTTAGATCAAATGCAACCGTTTTAAATTGGTCTACTCATC 1787
consensus_8461#1 ------------------------------------------------------------
consensus_8461#0 GCTTTATTTTAAAATCAAAAGCACACGAAAAGCAAGCAAGAATTACAGAAAAAGTTAAGA 1847
consensus_8461#1 ------------------------------------------------------------
consensus_8461#0 GAAAAACATATAAGTGGAGCAAACGAGAAAGAAGCGACCAAATTTTATTTACTTATTTTT 1907
consensus_8461#1 ------------------------------------------------------------
consensus_8461#0 CGGTTTTGATTGACAATGCTTAACCGCAAAATTGCCGGCAGAGTTTTTATCCGGAGGCTA 1967
consensus_8461#1 ------------------------------------------------------------
consensus_8461#0 CGTGTCACAACCACGTCTGTCT 1989
consensus_8461#1 ----------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||