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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8465#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 797 fasta sequence
[CCCGAGGATTTNGACGGAGGAGAAGTACAAGAAGATCGCATGACGAACCGGATGTTCTGCGACAAGATCAAGGTGTGCGAGGGTTCGCTCGACTTTCTGCACGCGGCCGGCTTCGCCGAGATCGAGCTGGATGGGGAGCCGCACCTGATCTGGTCGGAGGACAACATCGACCCAGAGTGTTCGCTGGAGGTGCTGCTGGAGGCGCTGAAAGCGG-CGAACCGATACCGGTCGAGCTGGACCGCAATCTGCAGGTGCTGCTGCCGTCGCAGGTGAAGCGCAGCAACTTGCCGCCGGATTTTTTCCGCATCTCGCCGGAAGAGATCAAGCGCGAGCAGCAGCTGCGCACGGAGGCGCTCGAGCAGGCGCAAATCCTTAAAACGAAAGCGATGCGCGAAAAGGAGGAGCTGCGCACGATCAATCGGTACAAGTTTTCG-CTGATCCGCGTGCGGTTCCCGAACGGGGTGTACCTGCAGGGAACGTTCAA-CGTGTACGAGAAGTTTGGCCAGGTGTGCGAGTTTGT-GCAGTCGTGCCTGATGCACGAG-TCGGCCGATTTTGCGCTCGTCTCGCCCGGCG-GGCTGAAGTACGACGATCCGGACGATCTGGACCGG-TCG-CTGTACGATCTGCGGCTGGTGCCGACGGTGGTGTTTAACTTTTGCTACGAAAATGAGTCGAAGAGCTTGACCGATTTCCTGAAGGAGGAGCTGATGCTACTGATTCAATCGTTTTAAAACCCGTTCCAGGGCGACGGGGGCAGCTCAATCGCGATGGCATCTGTCCTCCTACTCCTACTGCGTGTT]
[+] EMBL AL695748 [CCCGAGGATTTNGACGGAGGAGAAGTACAAGAAGATCGCATGACGAACCGGATGTTCTGCGACAAGATCAAGGTGTGCGAGGGTTCGCTCGACTTTCTGCACGCGGCCGGCTTCGCCGAGATCGAGCTGGATGGGGAGCCGCACCTGATCTGGTCGGAGGACAACATCGACCCAGAGTGTTCGCTGGAGGTGCTGCTGGAGGCGCTGAAAGCGG CGAACCGATACCGGTCGAGCTGGACCGCAATCTGCAGGTGCTGCTGCCGTCGCAGGTGAAGCGCAGCAACTTGCCGCCGGATTTTTTCCGCATCTCGCCGGAAGAGATCAAGCGCGAGCAGCAGCTGCGCACGGAGGCGCTCGAGCAGGCGCAAATCCTTAAAACGAAAGCGATGCGCGAAAAGGAGGAGCTGCGCACGATCAATCGGTACAAGTTTTCGCCTGATCCGCGTGCGGTTCCCGAACGGGGTGTACCTGCAGGGAACGTTCAACCGTGTACGAGAAGTTTGGCCAGGTGTGCGAGTTTGTCGCANTCGTGCCTGATGCACGAGCTCGGCCGATTTTGCGCTCGTCTCGCCCGGCGCGGCTGAAGTACGACGATCCGGACGATCTGGACCGGTTCGCCTGTACGATCTGCGGCTGGTGCCGACGGTGGTGTT ]
[+] EMBL BX627402 [ AGGGTTCGCTCGACTTTCTGCACGCGGCCGGCTTCGCCGAGATCGAGCTGGACGGCGAGCCGCACCTGATCTGGTCGGAGGACAACATCGATCCGGAGTGCTCGCTGGAGGTGCTGCTGGAGGCGCTGAAAGCGGCCGAACCGATACCGGTCGAGCTGGACCGCAATCTGCAGGTGCTGCTGCCGTCGCAGGTGAAGCGCAGCAACTTGCCGCCGGACTTTTTCCGCATCTCGCCGGAAGAGATCAAGCGCGAGCAGCAGCTGCGCACGGAGGCGCTCGAGCAGGCGCAAATCCTTAAAACGAAAGCGATGCGCGAAAAGGAGGAGCTGCGCACGATCAATCGGTACAAGTTTTCG CTGATCCGCGTGCGGTTCCCGAACGGGGTGTACCTGCAGGGGACGTTCAA CGTGTACGAGAAGTTTGGGCAGGTGTGCGAGTTTGT GCAGTCGTGCCTGATGCACGAG TCGGCCGATTTTGCGCTCGTCTCGCCCGGCG GGCTGAAGTACGACGATCCGGACGATCTGGACCGG TCG CTGTACGATCTGCGGCTGGTGCCGACNGTGGTGNTTAACTTTTGCTACGAAAATGAGTCGAA AGCTTGATCGANTTCCTGAAGGAGGAGCTGATGCTACT ]
[-] EMBL AGA282376 [ GCTGCGCACGATCAATCGGTACAAGTTTTCG CTGATCCGCGTGCGTTTCCCGAACGGGGTGTACCTGCAGGGAACGTTCAA CGTGTACGAGAAGTTTGGCCAGGTGTGCGAGTTTGT GCAGTCGTGCCTGATGCACGAG TCGGCCGATTTTGCGCTCGTCTCGCCCGGCG GGCTGAAGTACGACGATCCGGACGATCTGGACCGG TCG CTGTACGATCTGCGGCTGGTGCCGACGGTGGTGTTTAACTTTTGCTACGAAAATGAGTCGAAGAGCTTGACCGATTTCCTGAAGGAGGAGCTGATGCTACTGATTCAATCGTTTTAAAACCCGTTCCAGGGCGACGGGGGCAGCTCAATCGCGATGGCATCTGTCCTCCTACTCCTACTGCGTGTT]
[-] EMBL AGA285748 [ CGGGGTTTACCTGCAGGGAACGTTCAA CGTGTACGAGAAGTTTGGCCAGGTGTGCGAGTTTGT GCAGTCGTGCCTGATGCACGAG TCGGCCGATTTTGCGCTCGTCTCGCCCGGCG GGCTGAAGTACGACGATCCGGACGATCTGGACCGG TCG CTGTACGATCTGCGGCTGGTGCCGACGGTGGTGTTTAACTTTTGCTACGAAAATGAGTCGAAGAGCTTGACCGATTTCCTGAAGGAGGAGCTGATGCTACTGATTCAATCGTTTTAAAACCCGTTCCAGGGCGACGGGGGCAGCTCAATCGCGATGGCATCTGTCCTCCTACTCCTACTGCGTGTT]
[-] EMBL AGA285612 [ GTTTGT GCAGTCGTGCCTGATGCACGAG TCGGCCGATTTTGCGCTCGTCTCGCCCGGCG GGCTGAAGTACGACGATCCGGACGATCTGGACCGG TCG CTGTACGATCTGCGGCTGGTGCCGACGGTGGTGTTTAACTTTTGCTACGAAAATGAGTCGAAGAGCTTGACCGATTTCCTGAAGGAGGAGCTGATGCTACTGATTCAATCGTTTTAAAACCCGTTCCAGGGCGACGGGGGCAGCTCAATCGCGATGGCATCTGTCCTCCTACTCCTACTGCGTGTT]
consensusID : consensus_8465#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 651 fasta sequence
[GCTGGCCCGCTTTGAGGGGAAGGACAAGAAAGAGTTCAACACGTCGCTAGCGGCAATCCGGGCGCAGGTGCGCAAAGAGCTCGAGGCGGAAAAGAAAGCCAAAGAGGGCGGCGGTCCCACCGAGCAGGAAGGGTCCGCGGAGGACGGCACCGCCCAGGAGGCACGCAAAGATTACGCGGTGCAGGGCGTGTTCTTCCGCTGCCCAATGATAGGGGACGAGATTCTGCCGTACAAGGAGTGGAAGGGCAGAATAAAGGAGTTTCTGTACGAGCAGCTGGCGGCCGACCGGGGCCTCACCGCCTGTCTCATCATCTACAACTGCAATCCCAAAGATAAGGCGGA-GGTGTGCATCGAAACGCTCTCGAAATGCATCGAAAACATCATCAACAACCCGACGGAGGAGAAGTACAAGAAGATCCGCATGACGAACCGGATGTTCTGCGACAAGATCAAGGTGTGCGAGGGTTCGCTCGACTTTCTGCACGCGGCCGGCTTCGCCGAGATCGAGCTGGATGGGGAGCCGCACCTGATCTGGTCGGAGGACAACATCGATCCGGAGTGTTCGCTGGAGGTGCTGCTGGAGGCGCTGAAAGCGGCCGAACCGATACCGGTCGAGCTGGACCGCAATCTGCAGGTGCTGCTTGCCGTCGC]
[+] EMBL AGA280753 [GCTGGCCCGCTTTGAGGGGAAGGACAAGAAAGAGTTCAACACGTCGCTAGCGGCAATCCGGGCGCAGGTGCGCAAAGAGCTCGAGGCGGAAAAGAAAGCCAAAGAGGGCGGCGGTCCCACCGAGCAGGAAGGGTCCGCGGAGGACGGCACCGCCCAGGAGGCACGCAAAGATTACGCGGTGCAAGGCGTGTTCTTCCGCTGCCCAATGATAGGGGACGAGATTCTGCCGTACAAGGAGTGGAAGGGCAGAATAAAGGAGTTTCTGTACGAGCAGCTGGCGGCCGACCGGGGCCTCACCGCCTGTCTCATCATCTACAACTGCAATCCCAAAGATAAGGCGGA GGTGTGCATCGAAACGCTCTCGAAATGCATCGAAAACATCATCA ]
[+] EMBL AGA284441 [GCTGGCCCGCTTTGAGGGGAAGGACAAGAAAGAGTTCAACACGTCGCTAGCGGCAATCCGGGCGCAGGTGCGCAAAGAGCTCGAGGCGGAAAAGAAAGCCAAAGAGGGCGGCGGTCCCACCGAGCAGGAAGGGTCCGCGGAGGACGGCACCGCCCAGGAGGCACGCAAAGATTACGCGGTGCAGGGCGTGTTCTTCCGCTGCCCAATGATAGGGGACGAGATTCTGCCGTACAAGGAGTGGAAGGGCAGAATAAAGGAGTTTCTGTACGAGCAGCTGGCGGCCGACCGGGGCCTCACCGCCTGTCTCATCATCTACAACTGCAATCCCAAAGATAAGGCGGAGGGTGT ]
[+] EMBL AGA284309 [GCTGGCCCGCTTTGAGGGGAAGGACAAGAAAGAGTTCAACACGTCGCTAGCGGCAATCCGGGCGCAGGTGCGCAAAGAGCTCGAGGCGGAAAAGAAAGCCAAAGAGGGCGGCGGTCCCACCGAGCAGGAAGGGTCCGCGGAGGACGGCACCGCCCAAGAGGCACGCAAAGATTACGCGGTGCAGGGCGTGTTCTTCCGCTGCCCAATGATAGGGGACGAGATTCTGCCG ]
[+] EMBL BM656799 [ ccGAAAGAGTTCAACACGTCGCTAGCGGCAATCCGGGCGCAGGTGCGCAAAGAGCTCGAGGCGGAAAAGAAAGCCAAAGAGGGGGGCGGTCCCACCGAGCAGGAAGGGTCCGCGGAGGATGGCACCGCCCAGGAGGCACGCAAAGATTACGCGGTGCAGGGCGTGTTCTTCCGCTGCCCAATGATCGGGGACGAGATTCTCCCGTACAAGGAGTGGAAGGGCAGAATAAAGGAGTTTCTGTACGAGCAGCTGGCGGCCGACCGGGGCCTCACCGCCTGTCTCATCATCTACAACTGCAATCCCAAAGACAGGGCGGA GGTGTGCATCGAAACGCTGTCGAAATGCATCGAAAACATCATCAACAACCCGACGGAGGAGAAGTACAAGAAGATCCGCATGACGAACCGGATGTTCTGCGACAAGATCAAGGTGTGCGAGGGTTCGCTCGACTTTCTGCACGCGGCCGGCTTCGCCGAGATCGAGCTGGATGGGGAGCCGCACCTGATCTGGTCGGAGGACAACATCGATCCGGAGTGTTCGCTGGAGGTGCTGCTGGAGGCGCTGAAAGCGGCCGAACCGATACCGGTCGAGCTGGACCGCAATCTGCAGGTGCTGCTTGCCGTCGC]
consensusID : consensus_8465#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 440 fasta sequence
[AGAAATTCCCCGAGGTTTTCGCTCGACTTTCTGCACGCGGGCCGGCTTCGCCGATGATCGAGCTGGATGGGGAGCCGCACCTGATCTGGTCGGAGGACAACATCGATCCGGAGTGTTCGCTGGAGGTGCTGCTGGAGGCGCTGAAAGCGGNCGAACCGATACCGGTCGAGCTGGACCGCAATCTGCAGGTGCTGCTGCCGTCGCAGGTGAAGCGCAGCAACTTGCCGCCGGACTTTTTCCGCATCTCGCCGGAAGAGATCAAGCGCGAGCAGCAGCTGCGCACGGAGGCGCTCGAGCAGGCGCAAATCCTGAAAACGAAAGCGATGCGCGAAAAGGAGGAGCTGCGCACGATCAATCGGTACAAGTTTTCGCTGATCCGCGTGCGGTTCCCGAACGGGGTGTACCTGCAGGGGGACGTTCAACGTGTACGAGAAGTTTGG]
[+] EMBL AL694864 [AGAAATTCCCCGAGGTTTTCGCTCGACTTTCTGCACGCGGGCCGGCTTCGCCGATGATCGAGCTGGATGGGGAGCCGCACCTGATCTGGTCGGAGGACAACATCGATCCGGAGTGTTCGCTGGAGGTGCTGCTGGAGGCGCTGAAAGCGGNCGAACCGATACCGGTCGAGCTGGACCGCAATCTGCAGGTGCTGCTGCCGTCGCAGGTGAAGCGCAGCAACTTGCCGCCGGACTTTTTCCGCATCTCGCCGGAAGAGATCAAGCGCGAGCAGCAGCTGCGCACGGAGGCGCTCGAGCAGGCGCAAATCCTGAAAACGAAAGCGATGCGCGAAAAGGAGGAGCTGCGCACGATCAATCGGTACAAGTTTTCGCTGATCCGCGTGCGGTTCCCGAACGGGGTGTACCTGCAGGGGGACGTTCAACGTGTACGAGAAGTTTGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8465#0 ---CCCGAGGATTTNGACGGAGGAGAAGTACAAGAAGATCGCATGACGAACCGGATGTTC 57
consensus_8465#2 ------------------------------------------------------------
consensus_8465#1 GCTGGCCCGCTTTGAGGGGAAGGACAAGAAAGAGTTCAACACGTCGCTAGCGGCAATCCG 60
consensus_8465#0 TGCG-ACAAGATCAAGGTGTGCGAGGGTT-CGCTCGACTTTCTGCACGCGG-CCGGCTTC 114
consensus_8465#2 -----------AGAAATTCCCCGAGGTTTTCGCTCGACTTTCTGCACGCGGGCCGGCTTC 49
consensus_8465#1 GGCGCAGGTGCGCAAAGAGCTCGAGGCGGAAAAGAAAGCCAAAGAGGGCGG--CGGTCCC 118
** ***** * * **** *** *
consensus_8465#0 GCCGA-GATCGAGC-TGGATGGGGAGCCGCACCTGATCTGGTCGGAGGACAACATCGACC 172
consensus_8465#2 GCCGATGATCGAGC-TGGATGGGGAGCCGCACCTGATCTGGTCGGAGGACAACATCGATC 108
consensus_8465#1 ACCGAGCAGGAAGGGTCCGCGGAGGACGGCACC--GCCCAGGAGGCACGCAAAGATTACG 176
**** * ** * ** * * ***** * * ** *** *
consensus_8465#0 CAGAGTGTTCGCTGGAGGTGCTGCTGGAGGCGCTGAAAGCGGC-GAACCGATACCGGTC- 230
consensus_8465#2 CGGAGTGTTCGCTGGAGGTGCTGCTGGAGGCGCTGAAAGCGGNCGAACCGATACCGGTC- 167
consensus_8465#1 CGGTGCAGG-GCGTGTTCTTCCGCTGCC--CAATGATAGGGGACGAGATTCTGCCGTACA 233
* * * ** * * * **** * *** ** ** ** * *** *
consensus_8465#0 --GAGCTGGACCGCAATCTGCAGGTGCTGCTGCCGTCGCAGGTGAAGCGCAGCAACTTGC 288
consensus_8465#2 --GAGCTGGACCGCAATCTGCAGGTGCTGCTGCCGTCGCAGGTGAAGCGCAGCAACTTGC 225
consensus_8465#1 AGGAGTGGAAGGGCAGAATAAAGGAGTTTCTGTACGAGCAGCTGGCGGCCGACCGGGGCC 293
*** * * *** * *** * * *** **** ** * * * *
consensus_8465#0 CGCCGGATTTTTTCCGCATCTCGCCGGAAGAGATCAAGCGCGAGCAGCAGCTGCGCACGG 348
consensus_8465#2 CGCCGGACTTTTTCCGCATCTCGCCGGAAGAGATCAAGCGCGAGCAGCAGCTGCGCACGG 285
consensus_8465#1 TCACCGCCTGTCTCATCATCTACAACTGCAATCCCAAAGATAAGGCGGAGGTGTGCATCG 353
* * * * ** ***** * *** ** * ** ** *** *
consensus_8465#0 AGGCGCTC---GAGCAGGCGCAAATCCTTAAAACGAAAGCGATGCGCGAAAAG---GAGG 402
consensus_8465#2 AGGCGCTC---GAGCAGGCGCAAATCCTGAAAACGAAAGCGATGCGCGAAAAG---GAGG 339
consensus_8465#1 AAACGCTCTCGAAATGCATCGAAAACATCATCAACAACCCGACGGAGGAGAAGTACAAGA 413
* ***** * *** * * * * ** *** * ** *** **
consensus_8465#0 AGCTGCGCACGATCAATCGGTACAAGTTTTCGCTGATCCGCGTGCGGTTCCCGAACGGG- 461
consensus_8465#2 AGCTGCGCACGATCAATCGGTACAAGTTTTCGCTGATCCGCGTGCGGTTCCCGAACGGG- 398
consensus_8465#1 AGATCCGCATGACGAACCGG-----ATGTTCTGCGACAAGATCAAGGTGTGCGAGGGTTC 468
** * **** ** ** *** * *** ** * *** *** *
consensus_8465#0 GTGTACCTGCAGGGA-ACGTTCAACGTGTACGAGA---AGTTTGGCCAGGTGTGCGAGTT 517
consensus_8465#2 GTGTACCTGCAGGGGGACGTTCAACGTGTACGAGA---AGTTTGG--------------- 440
consensus_8465#1 GCTCGACTTTCTGCACGCGGCCGGCTTCGCCGAGATCGAGCTGGATGGGGAGCCGCACCT 528
* ** * ** * * * ***** ** * *
consensus_8465#0 TGTGCAGTCGTGCCTGATGCACGAGTCGGCCGATTTTGCGCTCGTCTCGCCCGGCGGGCT 577
consensus_8465#2 ------------------------------------------------------------
consensus_8465#1 GATCTGGTCGGAGGACAACATCGATCCGGAGTGTTCGCTGGAGGTGCTGCTGGAGGCGCT 588
consensus_8465#0 GAAGTACGACGATCCGGACGATCTGGACCGGTCGCTGTACGATCTGCGGCTGGTGCCGAC 637
consensus_8465#2 ------------------------------------------------------------
consensus_8465#1 GAAAGCGGCCGAACCGATA---CCGGTCGAGCTGGACCGCAATCTGCAGGTGCTGCTTGC 645
consensus_8465#0 GGTGGTGTTTAACTTTTGCTACGAAAATGAGTCGAAGAGCTTGACCGATTTCCTGAAGGA 697
consensus_8465#2 ------------------------------------------------------------
consensus_8465#1 CGTCGC------------------------------------------------------ 651
consensus_8465#0 GGAGCTGATGCTACTGATTCAATCGTTTTAAAACCCGTTCCAGGGCGACGGGGGCAGCTC 757
consensus_8465#2 ------------------------------------------------------------
consensus_8465#1 ------------------------------------------------------------
consensus_8465#0 AATCGCGATGGCATCTGTCCTCCTACTCCTACTGCGTGTT 797
consensus_8465#2 ----------------------------------------
consensus_8465#1 ----------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||