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Anopheles gambiae
cluster # 8471 cluster # 8471       Sequences # 10       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8471#0 length = 1951 sequences # 8  
consensus_8471#1 length = 570 sequences # 1  
consensus_8471#2 length = 552 sequences # 1  

consensusID : consensus_8471#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 8
consensus length = 1951
fasta sequence
                              [TTATCAGCGATCTTTTCGTTCCATCGCAAGTCTTGGGAAGCAGGAACGTTTCACCATCTCTGTGTTCCACCTGTTTTATCTACGTGGTACAGTATAGTTGCATCAGCAATGGCTTCCACACTAACGCCGGAGAGAAGGAGCATCTCATCACCCGCAACCTGCAGGAGGTGCTGGGCCAGGATAATCTTCGCGCTGTCCTGAAGGAGCGCGATATTAAGATATACTGGGGTACGGCCACGACTGGCAAACCACACATCGCTTACTTTGTCCCATGTCAAGGTGGCCGACTTTTTGAAAGCCGGCTGTGAGGTAACGATCCTGTTTGC-AGATCTGCACGCCTATCTGGACAACATGAAGGCGCCGTGGTCGCTGCTCAAGGAACGCACCAAGTACTACGAGGCGGTTATCAAGGCGATGCTTACCTCGCTCGGAGTGCCGCTGGACAAGCTGAAGTTCGTG-TGCGGCACGGACTATCAGCTGTCGAAGGAGTACACGCTGGATGTGTACCGGTTGTCCTCGGTTGTGACGCAGCACGACGCCAAGAAGGCGGGAGCGGAGGTGGTGAAGCAGGTGGAGCATCCGCTGATGTCGGGCATCCTCTACCCGGGCCTGCAGGCGCTGGACGAGGAGTATCTGAAGGTGGACGCCCAGTTCGGTGGAGTGGATCAGCGCAAAATTTTCACCTTCGCCGAGAAATACCTGCCGCAGCTGGGTTACGCCAAGCGTATTCATCTTATGAATCCGATGATCCCGGGACTGGCCGGCGGCAAGATGTCGTCCAGTGAGGAGGACTCAAAAATCGACCTGCTCGACAGTGCGGCGAAGGTGAAGAGCAAGATCAAGAAAGCGTTCTGTGAGCCGGGCAACATTGAGGACAATGGGCTGCTAAAGTTCGTGAAGCACGTCGT-GTATCCGATGTTC-AAGGAGGGCGAAGCATTCACGGTCCACCGCAAACCGGACTTTGGTGGCGATCTCGT-GTTTGCCGAGTACGAACAGCTGGAGGCTTGCTTTGCCGCCCAGGAGCTGCACCCGGGCGACTTGAAGGCAGCCGTCGAAGTGTACATCAACCGGCTGCTGGAACCGATCCGCAAGTCGTTCGACACGGATTACTACCGCGAGCTGACCGAGCGCGCCTATCCGGCACCGGTGAAGGTGCAGGCAGGAAAGCAGGCCGGTGGTGGCAAAGCGCAACCAGCAGCTGCCGGTGCGGGCACAAATGCTACTGCGGCGGTCGGTGAAAATACGCCCGACAAGCTGGAGCTGAAGGTCGGCCAGATCATGGACGCTGTGAAGCATCCGGACGCCGACAGTCTTTGCGTGCTGACGGTGGACATTGGTGGCGGCGAGCGGAAGGCGATCGTGAGCAATTTGATGGCTCACTACACGCTAGAGCAGCTGCGCGACCGGTTCGTGGTGGTGCTGACCAACATGAAGGCATCGAAAATTCGCGGCGTTGAGAGCGAAGGCTTGGTGCTGTATGCGGCAGGAGCGGAAAAGTGTGAAGCTTTGGCCGTACCGGAGGGTTCGAAGGTGGGCGAACGCATCATTGTGGAAGGGTTCGACAATACGGGCAACCCGGTCCCGGCGCTGAACCCGAAGAAGAAGGTGTGGGACAAGATTCAGGCGGA-CT-GCACACCGGCACGGACGGACAGGCACTGTGGAAGGAGTTTTCGCTGATGGCGCTGAACGGGGATCGGGTAACGAGCA-CGCTGGCAGGATGTAGCATCAAGTAGACCCGTGGCTAAGAAGGAGAGAAGGGACCTCTGTGTTTACGATGGCATTTCGCGACCGCTGTTGCGCTTTGAGAGT-CTTATTTTTTGGTGAACATTTTGTTGCAACATCATCTCCGTTAGGATGATTAAAAACGCATGTTTTTACACTCATTTCATACTTTTGCAGAGAGTAATTTATTAAAGTCGGCATCGCAAATGATTCAAACATAAAAAAAAAA]

[+] EMBL CNS09ADC             [TTATCAGCGATCTTTTCGTTCCATCGCAAGTCTTGGGAAGCAGGAACGTTTCACCATCTCTGTGTTCCACCTGTTTTATCTACGTGGTACAGTATAGTTGCATCAGCAATGGCTTCCACACTAACGCCGGAGAGAAGGAGCATCTCATCACCCGCAACCTGCAGGAGGTGCTGGGCCAGGATAATCTTCGCGCTGTCCTGAAGGAGCGCGATATTAAGATATACTGGGGTACGGCCACGACTGGCAAACCACACATCGCTTACTTTGTCCCATGTCAAGGTGGCCGACTTTTTGAAAGCCGGCTGTGAGGTAACGATCCTGTTTGCGAGATCTGCACGCCTATCTGGACAACATGAAGGCGCCGTGGTCGCTGCTCAAGGAACGCACCAAGTACTACGAGGCGGTTATCAAGGCGATGCTTACCTCGCTCGGAGTGCCGCTGGACAAGCTGAA TTCCTGTTGCGGCACGGACTATCAGCTGTCGAAGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL BX625324             [                                                                                                                                                                                                                                                                                                   TTGAAAGCCGGCTGTGAGGTAACGATCCTGTTTGC AGATCTGCACGCCTATCTGGACAACATGAAGGCGCCGTGGTCGCTGCTCAAGGAACGCACCAAGTACTACGAGGCGGTTATCAAGGCGATGCTTACCTCGCTCGGAGTGCCGCTGGACAAGCTGAAGTTCGTG TGCGGCACGGACTATCAACTGTCGAAGGAGTACACGCTGGATGTGTACCGGTTGTCCTCGGTTGTGACGCAGCACGACGCCAAGAAGGCGGGAGCGGAGGTGGTGAAGCAGGTGGAGCATCCGCTGATGTCGGGCATCCTCTACCCGGGCCTGCAGGCGCTGGACGAGGAGTATCTGAAGGTGGACGCCCAGTTCGGTGGAGTGGATCAGCGCAAAATTTTCACCTTCGCCGAGAAATACCTGCCGCAGCTGGGTTACGCCAAGCGTATTCATCTTATGAATCCGATGATCCCGGGACTGGCCGGCGGCAAGATGTCGTCCAGTGAGGAGGACTCAAAAATCGACCTGCTCGACAGTGCGGCGAAGGTGAAGAGCAAGATCAAGAAAGCGTTCTGTGAGCCGGGCAACATTGAGGACAATGGGCTGCTAAAGTTCGTGAAGCACGTCGT GTATCCGATGTTC AAGGAGGGCGAAGCATTCACGGTCCACCGCAAACCGGACTTTGGTGGCGATCTCGT GTTTGCCGAGTACGAACAGCTGGANGCTTGCTTTGCCGCCCAGGAGCTGCACCCNGGCGACTTGAANGCAGCCGTCGAAGTGTACATCAACCNGCTGCTGGAACCGATCCGCAAGTCGTTCGACACGGATTACTACCGCGAGCTGACCGAACGCGCCTATCCGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL BM584331             [                                                                                                                                                                                                                                                                                                                           ccgCTGTTTGC AGATCTGCACGCCTATCTGGACAACATGAAGGCGCCGTGGTCGCTGCTCAAGGAACGCACCAAGTACTACGAGGCGGTTATCAAGGCGATGCTTACCTCGCTCGGAGTGCCGCTGGACAAGCTGAAGTTCGTG TGCGGCACGGACTATCAGCTGTCGAAGGAGTACACGCTGGATGTGTACCGGTTGTCCTCGGTCGTGACGCAGCACGACGCCAAGAAGGCGGGAGCGGAGGTGGTGAAGCAGGTGGAGCATCCGCTGATGTCGGGCATCCTGTACCCGGGTCTGCAGGCGCTGGACGAGGAGTATCTGAAGGTGGACGCCCAGTTCGGTGGGGTGGATCAGCGCAAAATTTTCACCTTCGCCGAGAAATACCTGCCGCAGCTGGGTTACGCCAAGCGTATTCATCTTATGAATCCAATGATCCCGGGACTGGCCGGCGGCAAGATGTCGTCCAGTGAGGAGGACTCAAAAATCGACCTGCTCGACAGTGCGGCGAAGGTGAAGAGCAAGATCAAGAAAGCGTTCTGCGAGCCGGGCAACATTGAGGACAATGGACTGCTAAAGTTCGTGAAGCACGTCGTGGTATCCGATGTTCAAAGGAGGGAGAAGCATTCACGGTCCACCGCAAACCGGACTTTGGTGGCGATCTCGTGGTTTGCCGAGTACGACCA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL CNS09GUP             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     acTGGGGGAAATGGGTTGCTAAAGTTCGTGAAGCACGTCGT GTATCCGATGTTC AAGGAGGGCGAAATA TCACGGTCCACCGCAAACCGGACTTTGGTGGCGATCTCGT GTTTGCCGAGTACGAACAGCTGGAGGCTTGCTTTGCCGCCCAGGAGCTGCACCCGGGCGACTTGAAGGCAGCCGTCGAAGTGTACATCAACCGGCTGCTGGAACCGATCCGAAAGTCGTTCGACACGGATTACTACCGCGAGCTGACCGAGCGCGCCTATCCGGCACCGGTGAAGGTGCAGGCAGGAAAGCAGGCCGGTGGTGGCAAAGCGCAACCAGCAGCTGCCGGTGCGGGCACAAATGCTACTGCGGCGGTCGGTGAAAATACGCCCGACAAGCTGGAGCTGAAGGTCGGCCAGATCATGGACGCTGTGAAGCATCCGGACGCCGACAGTCTTTGCGTGCTGACGGTGGACATTGGTGGCGGCGAGCGGAAGGCGATCGTGAGCAATTTGATGGCTCACTACACGCTAGAGCAGCTGCGCGACCGGTTCGTGGTGGTGCTGACCAACATGAAGGCATCGAAAATTCGCGGCGTTGAGAGCGAAGGCTTGGTGCTGTATGCGGCAGGAGCGGAAAAGTGTGAAGCTTTGGCCGTACCGGAGGGTTCGAAGGTGGGCGAACGCATCATTGTGGAAGGGTTCGACAATACGGGCAACCCGGTCCCGGCGCTGAACCCGAAGAAGAAGGTGTGGGACAAGATTCAGGCGGA CTGGCACACCGGCACGAACGGACAGGCACTGTGGAAGGAGTTTTCGCTGATGGCGCTGAACGGGGATCGGGTAACGAGCA CGCTGGCAGGATGTAGCATCAAGTAGACCCGTGGCTAAGAAGGAGAGAAGGGACCTCTGTGTTTACGATGGCATTTCGCGACCGCTGTTGCGCTTTGAGAGT CTTATTTTTTGGTGAACATTTTGTTGCAACATCATCTCCGTTAGAATGATTAAAAACGCATG                                                                                ]
[-] EMBL CNS09GUQ             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         TGCCGAGTACGAACAGCTGGAGGCTTGCTTTGCCGCCCAGGAGCTGCACCCGGGCGACTTGAAGGCAGCCGTCGAAGTGTACATCAACCGGCTGCTGGAACCGATCCGCAAGTCGTTCGACACGGATTACTACCGCGAGCTGACCGAGCGCGCCTATCCGGCACCGGTGAAGGTGCAGGCAGGAAAGCAGGCCGGTGGTGGCAAAGCGCAACCAGCAGCTGCCGGTGCGGGCACAAATGCTACTGCGGCGGTCGGTGAAAATACGCCCGACAAGCTGGAGCTGAAGGTCGGCCAGATCATGGACGCTGTGAAGCATCCGGACGCCGACAGTCTTTGCGTGCTGACGGTGGACATTGGTGGCGGCGAGCGGAAGGCGATCGTGAGCAATTTGATGGCTCACTACACGCTAGAGCAG TGCGCGACCGGTTCGTGGTGGTGCTGACCAACATGAAGGCATCGAAAATTCGCGGCGTTGAGAGCGAAGGCTTGGTGCTGTATGCGGCAGGAGCGGAAAAGTGTGAAGCTTTGG CGTACCGGAGGGTTCGAAGGTGGGCGAACGCATCATTGTGGAAGGGTTCGACAATACGGGCAACCCGGTCCCGGCGCTGAACCCGAAGAAGAAGGTGTGGGACAAGATTCAGGCGGAGCT GCACACCGGCACGGACGGACAGGCACTGTGGAAGGAGTTTTCGCTGATGGCGCTGAACGGGGATCGGGTAACGAGCA CGCTGGCAGGATGTTTCATCAAGTAGACCCGTGGCTAAGAAGGAGAGAAGGGACCTCTGTGTTTACGATGGCATTTCGCGACCGCTGTTGCGCTTTGAGAGT CTTATTTTTTGGTGAACATTTTGTTGCAACATCATCTCCGTTAGGATGATTAAAAACGCATGTTTTTACACTCATTTCATACTTTTGCAGAGAGTAATTTATTAAAGTCGGCATCGCAAATGATTCAAACATAAAAAAAAAA]
[+] EMBL BM582881             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ccgTGAAGGCAGCCGTCGAAGTGTACATCAACCGGCTGCTGGAACCGATCCGCAAGTCGTTCGACACGGATTACTACCGCGAGCTGACCGAGCGCGCCTATCCGGCACCGGTGAAGGTGCAGGCAGGAAAGCAGGCCGGTGGTGGTAAAGCGCAACCAGCAGCTGCCGGTGCGGGCACAAATGCTACTGCGGCGGTCGGTGAAAATACGCCCGACAAGCTGGAGCTGAAGGTCGGCCAGATCATGGACGCTGTGAAGCATCCGGACGCCGACAGTCTTTGCGTGCTGACGGTGGACATTGGTGGCGGCGAGCGGAAGGCGATCGTGAGCAATTTGATGGCTCACTACACGCTAGAGCAGCTGCGCGACCGGTTTGTGGTGGTGCTGACCAACATGAAGGCATCGAAAATTCGCGGCGTAGAGAGCGAAGGCTTGGTGCTGTATGCGGCAGGAGCGGAAAAGTGTGAAGCTTTGGCCGTACCGGAGGGTTCGAAGGTGGGCGAACGCATCATTGTGGAAGGGTTCGACAATACGGGCAACCCGGTCCCAGCGCTGAACCCGAAGAAGAAGGTGTGGGACAAGATTCAGGCGGAGCT GCACACCGGCACGGACGGACAGGCACTGTGGAAGGAGTTTTCGCTGATGACGCTGAACGGGGATCGGGTAAC                                                                                                                                                                                                                                                           ]
[+] EMBL BX609012             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   GCTGCTGGAACCGATCCGCAAGTCGTTCGACACGGATTACTACCGCGAGCTGACCGAACGCGCCTATCCGGCACCGGTGAAGGTGCAGGCAGGAAAGCAGGCCGGTGGTGGCAAAGCGCAACCAGCAGCTGCCGGTGCGGGCACAAATGCTACTGCGGCGGTCGGTGAAAATACGCCCGACAAGCTGGAGCTGAAGGTCGGCCAGATCATGGACGCTGTGAAGCATCCGGACGCCGACAGTCTTTGCGTGCTGACGGTGGACATTGGTGGCGGCGAGCGGAAGGCGATCGTGAGCAATTTGATGGCTCACTACACGCTAGAGCAGCTGCGCGACCGGTTCGTGGTGGTGCTGACCAACATGAAGGCATCGAAAATTCGCGGCGTTGAGAGCGAAGGCTTGGTGCTGTATGCGGCAGGAGCGGAAAAGTGTGAAGCT                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[-] EMBL CNS09ADD             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ACCGGTTTGTGGTGGTGCTGACCAACATGAAGGCATCGCAAATTCGCGGCGTAGAGAGCGAAGGCTTGGTGCTGTATGCGGCAGGAGCGGAAAAGTGTGAAGCTTTGG CGTACCGGAGGGTTCGAAGGTGGGCGAACGCATCATTGTGGAAGGGTTCGACAATACGGGCAACCCGGTCCCAGCGCTGAACCCGAAGAAGAAGGTGTGGGACAAGATTCAGGCGAG CT GCACACCGGCACGGACGGACAGGCACTGTGGAAGGAGTTTTCGCTGATGACGCTGAACGGGGATCGGGTAACGAGCAGCGCTGGCAGGATGTAGCATCAAGTAGACCCGTGGCTAAGAGGGAGAGAAGGGACCTCTGTGTTTACGATGGCATTTCGCGACCGCTGTTGCGCTTTGAGAGTGCTTTTTTTTTGGTGAACATTTTGTTGCAACATCATCTCCGTTAGGATGATTA                                                                                          ]


>consensus_8471#0 TTATCAGCGATCTTTTCGTTCCATCGCAAGTCTTGGGAAGCAGGAACGTTTCACCATCTC TGTGTTCCACCTGTTTTATCTACGTGGTACAGTATAGTTGCATCAGCAATGGCTTCCACA CTAACGCCGGAGAGAAGGAGCATCTCATCACCCGCAACCTGCAGGAGGTGCTGGGCCAGG ATAATCTTCGCGCTGTCCTGAAGGAGCGCGATATTAAGATATACTGGGGTACGGCCACGA CTGGCAAACCACACATCGCTTACTTTGTCCCATGTCAAGGTGGCCGACTTTTTGAAAGCC GGCTGTGAGGTAACGATCCTGTTTGCAGATCTGCACGCCTATCTGGACAACATGAAGGCG CCGTGGTCGCTGCTCAAGGAACGCACCAAGTACTACGAGGCGGTTATCAAGGCGATGCTT ACCTCGCTCGGAGTGCCGCTGGACAAGCTGAAGTTCGTGTGCGGCACGGACTATCAGCTG TCGAAGGAGTACACGCTGGATGTGTACCGGTTGTCCTCGGTTGTGACGCAGCACGACGCC AAGAAGGCGGGAGCGGAGGTGGTGAAGCAGGTGGAGCATCCGCTGATGTCGGGCATCCTC TACCCGGGCCTGCAGGCGCTGGACGAGGAGTATCTGAAGGTGGACGCCCAGTTCGGTGGA GTGGATCAGCGCAAAATTTTCACCTTCGCCGAGAAATACCTGCCGCAGCTGGGTTACGCC AAGCGTATTCATCTTATGAATCCGATGATCCCGGGACTGGCCGGCGGCAAGATGTCGTCC AGTGAGGAGGACTCAAAAATCGACCTGCTCGACAGTGCGGCGAAGGTGAAGAGCAAGATC AAGAAAGCGTTCTGTGAGCCGGGCAACATTGAGGACAATGGGCTGCTAAAGTTCGTGAAG CACGTCGTGTATCCGATGTTCAAGGAGGGCGAAGCATTCACGGTCCACCGCAAACCGGAC TTTGGTGGCGATCTCGTGTTTGCCGAGTACGAACAGCTGGAGGCTTGCTTTGCCGCCCAG GAGCTGCACCCGGGCGACTTGAAGGCAGCCGTCGAAGTGTACATCAACCGGCTGCTGGAA CCGATCCGCAAGTCGTTCGACACGGATTACTACCGCGAGCTGACCGAGCGCGCCTATCCG GCACCGGTGAAGGTGCAGGCAGGAAAGCAGGCCGGTGGTGGCAAAGCGCAACCAGCAGCT GCCGGTGCGGGCACAAATGCTACTGCGGCGGTCGGTGAAAATACGCCCGACAAGCTGGAG CTGAAGGTCGGCCAGATCATGGACGCTGTGAAGCATCCGGACGCCGACAGTCTTTGCGTG CTGACGGTGGACATTGGTGGCGGCGAGCGGAAGGCGATCGTGAGCAATTTGATGGCTCAC TACACGCTAGAGCAGCTGCGCGACCGGTTCGTGGTGGTGCTGACCAACATGAAGGCATCG AAAATTCGCGGCGTTGAGAGCGAAGGCTTGGTGCTGTATGCGGCAGGAGCGGAAAAGTGT GAAGCTTTGGCCGTACCGGAGGGTTCGAAGGTGGGCGAACGCATCATTGTGGAAGGGTTC GACAATACGGGCAACCCGGTCCCGGCGCTGAACCCGAAGAAGAAGGTGTGGGACAAGATT CAGGCGGACTGCACACCGGCACGGACGGACAGGCACTGTGGAAGGAGTTTTCGCTGATGG CGCTGAACGGGGATCGGGTAACGAGCACGCTGGCAGGATGTAGCATCAAGTAGACCCGTG GCTAAGAAGGAGAGAAGGGACCTCTGTGTTTACGATGGCATTTCGCGACCGCTGTTGCGC TTTGAGAGTCTTATTTTTTGGTGAACATTTTGTTGCAACATCATCTCCGTTAGGATGATT AAAAACGCATGTTTTTACACTCATTTCATACTTTTGCAGAGAGTAATTTATTAAAGTCGG CATCGCAAATGATTCAAACATAAAAAAAAAA



consensusID : consensus_8471#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 570
fasta sequence
                              [GAGCTGCACCCGGGCGACTTGAAGGCAGCCGCCGAAGGGTACATCAACCGGCGGCTGGAACCGATCCGCAAGTCGTGCGACACGGATCACTACCGCGAGCTGACCGAACGCGCCTATCCGGCACCGGTGAAGGGGCAGGCAGGAAAGCAGGCCGGTGGTGGCAAAGCGCAACCAGCAGCTGCCGGGGCGGGCACAAAGGCTACTGCGGCGGTCGGTGAAAATGCCCGACAAGCTGGAGCTGAAGGGCGGCCAGATCATGGACGCTGTGAAGCATCCGGACGCCGACAGTCTTTGCGTGCTGACGGGGGACATGGGTGGCGGCGAGCGGAAGGCGAACGTGAGCAATTGGATGGCCCACCACACGCTAGAGCAGCCGCGCGACCGGGTCGGGGGGGGGCCGACCAACAGGAAGGCACCGAAAAACCGCGGCGTTGAGAGCGAAGGCCTGGGGGCGGGAGGCGGCAGGAGCGGAAAAGGGGGAAGCTTGGGCCGGACCGGAGGGGCCGAAGGGGGGCGAACGCAACATGGGGGAAGGGGGCGACAAAACGGGCAACCCGGGCCCGGCGCCGA]

[+] EMBL BX610252             [GAGCTGCACCCGGGCGACTTGAAGGCAGCCGCCGAAGGGTACATCAACCGGCGGCTGGAACCGATCCGCAAGTCGTGCGACACGGATCACTACCGCGAGCTGACCGAACGCGCCTATCCGGCACCGGTGAAGGGGCAGGCAGGAAAGCAGGCCGGTGGTGGCAAAGCGCAACCAGCAGCTGCCGGGGCGGGCACAAAGGCTACTGCGGCGGTCGGTGAAAATGCCCGACAAGCTGGAGCTGAAGGGCGGCCAGATCATGGACGCTGTGAAGCATCCGGACGCCGACAGTCTTTGCGTGCTGACGGGGGACATGGGTGGCGGCGAGCGGAAGGCGAACGTGAGCAATTGGATGGCCCACCACACGCTAGAGCAGCCGCGCGACCGGGTCGGGGGGGGGCCGACCAACAGGAAGGCACCGAAAAACCGCGGCGTTGAGAGCGAAGGCCTGGGGGCGGGAGGCGGCAGGAGCGGAAAAGGGGGAAGCTTGGGCCGGACCGGAGGGGCCGAAGGGGGGCGAACGCAACATGGGGGAAGGGGGCGACAAAACGGGCAACCCGGGCCCGGCGCCGA]


>consensus_8471#1 GAGCTGCACCCGGGCGACTTGAAGGCAGCCGCCGAAGGGTACATCAACCGGCGGCTGGAA CCGATCCGCAAGTCGTGCGACACGGATCACTACCGCGAGCTGACCGAACGCGCCTATCCG GCACCGGTGAAGGGGCAGGCAGGAAAGCAGGCCGGTGGTGGCAAAGCGCAACCAGCAGCT GCCGGGGCGGGCACAAAGGCTACTGCGGCGGTCGGTGAAAATGCCCGACAAGCTGGAGCT GAAGGGCGGCCAGATCATGGACGCTGTGAAGCATCCGGACGCCGACAGTCTTTGCGTGCT GACGGGGGACATGGGTGGCGGCGAGCGGAAGGCGAACGTGAGCAATTGGATGGCCCACCA CACGCTAGAGCAGCCGCGCGACCGGGTCGGGGGGGGGCCGACCAACAGGAAGGCACCGAA AAACCGCGGCGTTGAGAGCGAAGGCCTGGGGGCGGGAGGCGGCAGGAGCGGAAAAGGGGG AAGCTTGGGCCGGACCGGAGGGGCCGAAGGGGGGCGAACGCAACATGGGGGAAGGGGGCG ACAAAACGGGCAACCCGGGCCCGGCGCCGA



consensusID : consensus_8471#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 552
fasta sequence
                              [AGGCAGAATCCGCACGAGTGCGATCGTGAGCATTTGATGGCTCACTACACGCTAGAGCAGCTGCGCGACCGGTTTGTGGTGGTGCTGACCAACATGAAGGCATCGAAAATTCGCGGCGTAGAGAGCGAAGGCTTGGTGCTGTATGCGGCAGGAGCGGAAAAGTGTGAAGCTTTGGCCGTACCGGAGGGTTCGAAGGTGGGCGAACGCATCATTGTGGAAGGGTTCGACAATACGGGCAACCCGGTCCCAGCGCTGAACCCGAAGAAGAAGGTGTGGGACAAGATTCAGGCGGAGCTGCGACACCGGCACGGACGGACAGGCACTGTGGAAGGAGTTTTCGCGTGATGACGCTGAACGGGGATCGGGTAACGAGCACGCTGGCAGGACTGTAGCATCAAGTAGACCCGTGGGCTAAGAGGGAGAGAAGGGACCTACTGTGTTTACGATGGCNATTTCGNGACCGCGTGTTGCGCTTTGAGAGTCTTCNAGGGCGAGTGGTGAACAGTTTNCGGTTGCAANCAGTCGATCTCCGGTGTAGGGATGATTANNNAG]

[+] EMBL BX468188             [AGGCAGAATCCGCACGAGTGCGATCGTGAGCATTTGATGGCTCACTACACGCTAGAGCAGCTGCGCGACCGGTTTGTGGTGGTGCTGACCAACATGAAGGCATCGAAAATTCGCGGCGTAGAGAGCGAAGGCTTGGTGCTGTATGCGGCAGGAGCGGAAAAGTGTGAAGCTTTGGCCGTACCGGAGGGTTCGAAGGTGGGCGAACGCATCATTGTGGAAGGGTTCGACAATACGGGCAACCCGGTCCCAGCGCTGAACCCGAAGAAGAAGGTGTGGGACAAGATTCAGGCGGAGCTGCGACACCGGCACGGACGGACAGGCACTGTGGAAGGAGTTTTCGCGTGATGACGCTGAACGGGGATCGGGTAACGAGCACGCTGGCAGGACTGTAGCATCAAGTAGACCCGTGGGCTAAGAGGGAGAGAAGGGACCTACTGTGTTTACGATGGCNATTTCGNGACCGCGTGTTGCGCTTTGAGAGTCTTCNAGGGCGAGTGGTGAACAGTTTNCGGTTGCAANCAGTCGATCTCCGGTGTAGGGATGATTANNNAG]


>consensus_8471#2 AGGCAGAATCCGCACGAGTGCGATCGTGAGCATTTGATGGCTCACTACACGCTAGAGCAG CTGCGCGACCGGTTTGTGGTGGTGCTGACCAACATGAAGGCATCGAAAATTCGCGGCGTA GAGAGCGAAGGCTTGGTGCTGTATGCGGCAGGAGCGGAAAAGTGTGAAGCTTTGGCCGTA CCGGAGGGTTCGAAGGTGGGCGAACGCATCATTGTGGAAGGGTTCGACAATACGGGCAAC CCGGTCCCAGCGCTGAACCCGAAGAAGAAGGTGTGGGACAAGATTCAGGCGGAGCTGCGA CACCGGCACGGACGGACAGGCACTGTGGAAGGAGTTTTCGCGTGATGACGCTGAACGGGG ATCGGGTAACGAGCACGCTGGCAGGACTGTAGCATCAAGTAGACCCGTGGGCTAAGAGGG AGAGAAGGGACCTACTGTGTTTACGATGGCNATTTCGNGACCGCGTGTTGCGCTTTGAGA GTCTTCNAGGGCGAGTGGTGAACAGTTTNCGGTTGCAANCAGTCGATCTCCGGTGTAGGG ATGATTANNNAG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8471#0      TTATCAGCGATCTTTTCGTTCCATCGCAAGTCTTGGGAAGCAGGAACGTTTCACCATCTC 60
consensus_8471#1      ------------------------------------------------------------
consensus_8471#2      ------------------------------------------------------------
                                                                                  

consensus_8471#0      TGTGTTCCACCTGTTTTATCTACGTGGTACAGTATAGTTGCATCAGCAATGGCTTCCACA 120
consensus_8471#1      ------------------------------------------------------------
consensus_8471#2      ------------------------------------------------------------
                                                                                  

consensus_8471#0      CTAACGCCGGAGAGAAGGAGCATCTCATCACCCGCAACCTGCAGGAGGTGCTGGGCCAGG 180
consensus_8471#1      ------------------------------------------------------------
consensus_8471#2      ------------------------------------------------------------
                                                                                  

consensus_8471#0      ATAATCTTCGCGCTGTCCTGAAGGAGCGCGATATTAAGATATACTGGGGTACGGCCACGA 240
consensus_8471#1      ------------------------------------------------------------
consensus_8471#2      ------------------------------------------------------------
                                                                                  

consensus_8471#0      CTGGCAAACCACACATCGCTTACTTTGTCCCATGTCAAGGTGGCCGACTTTTTGAAAGCC 300
consensus_8471#1      ------------------------------------------------------------
consensus_8471#2      ------------------------------------------------------------
                                                                                  

consensus_8471#0      GGCTGTGAGGTAACGATCCTGTTTGCAGATCTGCACGCCTATCTGGACAACATGAAGGCG 360
consensus_8471#1      ------------------------------------------------------------
consensus_8471#2      ------------------------------------------------------------
                                                                                  

consensus_8471#0      CCGTGGTCGCTGCTCAAGGAACGCACCAAGTACTACGAGGCGGTTATCAAGGCGATGCTT 420
consensus_8471#1      ------------------------------------------------------------
consensus_8471#2      ------------------------------------------------------------
                                                                                  

consensus_8471#0      ACCTCGCTCGGAGTGCCGCTGGACAAGCTGAAGTTCGTGTGCGGCACGGACTATCAGCTG 480
consensus_8471#1      ------------------------------------------------------------
consensus_8471#2      ------------------------------------------------------------
                                                                                  

consensus_8471#0      TCGAAGGAGTACACGCTGGATGTGTACCGGTTGTCCTCGGTTGTGACGCAGCACGACGCC 540
consensus_8471#1      ------------------------------------------------------------
consensus_8471#2      ------------------------------------------------------------
                                                                                  

consensus_8471#0      AAGAAGGCGGGAGCGGAGGTGGTGAAGCAGGTGGAGCATCCGCTGATGTCGGGCATCCTC 600
consensus_8471#1      ------------------------------------------------------------
consensus_8471#2      ------------------------------------------------------------
                                                                                  

consensus_8471#0      TACCCGGGCCTGCAGGCGCTGGACGAGGAGTATCTGAAGGTGGACGCCCAGTTCGGTGGA 660
consensus_8471#1      ------------------------------------------------------------
consensus_8471#2      ------------------------------------------------------------
                                                                                  

consensus_8471#0      GTGGATCAGCGCAAAATTTTCACCTTCGCCGAGAAATACCTGCCGCAGCTGGGTTACGCC 720
consensus_8471#1      ------------------------------------------------------------
consensus_8471#2      ------------------------------------------------------------
                                                                                  

consensus_8471#0      AAGCGTATTCATCTTATGAATCCGATGATCCCGGGACTGGCCGGCGGCAAGATGTCGTCC 780
consensus_8471#1      ------------------------------------------------------------
consensus_8471#2      ------------------------------------------------------------
                                                                                  

consensus_8471#0      AGTGAGGAGGACTCAAAAATCGACCTGCTCGACAGTGCGGCGAAGGTGAAGAGCAAGATC 840
consensus_8471#1      ------------------------------------------------------------
consensus_8471#2      ------------------------------------------------------------
                                                                                  

consensus_8471#0      AAGAAAGCGTTCTGTGAGCCGGGCAACATTGAGGACAATGGGCTGCTAAAGTTCGTGAAG 900
consensus_8471#1      ------------------------------------------------------------
consensus_8471#2      ------------------------------------------------------------
                                                                                  

consensus_8471#0      CACGTCGTGTATCCGATGTTCAAGGAGGGCGAAGCATTCACGGTCCACCGCAAACCGGAC 960
consensus_8471#1      ------------------------------------------------------------
consensus_8471#2      ------------------------------------------------------------
                                                                                  

consensus_8471#0      TTTGGTGGCGATCTCGTGTTTGCCGAGTACGAACAGCTGGAGGCTTGCTTTGCCGCCCAG 1020
consensus_8471#1      ------------------------------------------------------------
consensus_8471#2      ------------------------------------------------------------
                                                                                  

consensus_8471#0      GAGCTGCACCCGGGCGACT-TGAAGGCAGCCGTCGAAGTGTACATCAACCGGCTGCTGGA 1079
consensus_8471#1      GAGCTGCACCCGGGCGACT-TGAAGGCAGCCGCCGAAGGGTACATCAACCGGCGGCTGGA 59
consensus_8471#2      AGGCAGAATCCGCACGAGTGCGATCGTGAGCATTTGATGGCTCACTACACG----CTAGA 56
                        ** * * ***  *** *  **  *    *     *  *  **  *  **    ** **

consensus_8471#0      ACCGATCCGCAAGTCGT--TCGACACGGATTACTACCGCGAGCTGACCGAGCGCGCCTAT 1137
consensus_8471#1      ACCGATCCGCAAGTCGT--GCGACACGGATCACTACCGCGAGCTGACCGAACGCGCCTAT 117
consensus_8471#2      GCAGCTGCGCGACCGGTTTGTGGTGGTGCTGACCAACATGAAGGCATCGAAAATTCGCGG 116
                       * * * *** *   **    *     * * ** * *  **    * ***     *    

consensus_8471#0      CCGGCACCGGTGAAGGTGCAGGCAGGAAAGCAGGCCGGTGGTGGCAAAGCGC-AACCAGC 1196
consensus_8471#1      CCGGCACCGGTGAAGGGGCAGGCAGGAAAGCAGGCCGGTGGTGGCAAAGCGC-AACCAGC 176
consensus_8471#2      CGTAGAG-AGCGAAGGCTTGGTGCTGTATGCGG--CAGGAGCGGAAAAGTGTGAAGCTTT 173
                      *    *   * *****    *    * * ** *  * *  * ** **** *  ** *   

consensus_8471#0      AGCTGCCGGTGCGGGCACAAATGCTACTGCGGCGGTCGGTGAAAATACGCCCGACAAGCT 1256
consensus_8471#1      AGCTGCCGGGGCGGGCACAAAGGCTACTGCGGCGGTCGGTGAAAAT--GCCCGACAAGCT 234
consensus_8471#2      GGCCGTACCGGAGGGTTCGAAGGTGGGCGAACGCATCATTGTGGAAGGGTTCGACAAT-- 231
                       ** *     * ***  * ** *     *      **  **   *   *  ******   

consensus_8471#0      GGAGCTGAAGGTCGGCCAGATCATGGACGCTGTGAAGCATCCGGACGCCGACAGTCTTTG 1316
consensus_8471#1      GGAGCTGAAGGGCGGCCAGATCATGGACGCTGTGAAGCATCCGGACGCCGACAGTCTTTG 294
consensus_8471#2      -------ACGGGCAACCCGGTCCCAG-CGCTG------AACCCGAAGAAGAAGGTGTGGG 277
                             * ** *  ** * **   * *****      * ** ** *  **  ** *  *

consensus_8471#0      -CGTGCTGACGGTGGACATTGGTGGCGGCGAGCGGAAGGCGATCGTGAGCAATTTGATGG 1375
consensus_8471#1      -CGTGCTGACGGGGGACATGGGTGGCGGCGAGCGGAAGGCGAACGTGAGCAATTGGATGG 353
consensus_8471#2      ACAAGATTCAGGCGGAGCTGCGACACCG-GCACGGA---CGGACAGGCACTGTGGAAGGA 333
                       *  * *   ** ***  *  *   * * *  ****   **  *  *  *  *   * * 

consensus_8471#0      CTCACTACACGCTAGAGCAGCTGCGCGACCGGTTCGTGGTGGTGCTGACCAACATGAAGG 1435
consensus_8471#1      CCCACCACACGCTAGAGCAGCCGCGCGACCGGGTCGGGGGGGGGCCGACCAACAGGAAGG 413
consensus_8471#2      GTTTTCGCGTGATGACGCTGAACGGGGATCGGGTAACGAGCACGCTGGC-AGGACTGTAG 392
                             *  * *   ** *    * ** *** *   *     ** * * *  *     *

consensus_8471#0      CATCGAAAATTCGCG-GCGTTGAGAGCGAAGGCTTGGTG-CTGTATGCGGCAGGAGCGGA 1493
consensus_8471#1      CACCGAAAAACCGCG-GCGTTGAGAGCGAAGGCCTGGGGGCGGGAGGCGGCAGGAGCGGA 472
consensus_8471#2      CATCAAGTAGACCCGTGGGCTAAGAGGGAGAGA--AGGGACCTACTGTGTTTACGATGGC 450
                      ** * *  *  * ** * * * **** **  *    * * *     * *        ** 

consensus_8471#0      AAAGTGTGAAGCTTTGGCCGTACCGGAGGGTTCGAAGGTGGGCGAACGCATCATTGTGGA 1553
consensus_8471#1      AAAGGGGGAAGCTTGGGCCGGACCGGAGGGGCCGAAGGGGGGCGAACGCAACATGGGGGA 532
consensus_8471#2      NATTTCGNGACCGCGTGTTGCGCTTTGAGAGTCTTCNA-GGGCGAGTGGTGAACAGTTTN 509
                       *       * *    *  *  *     *   *      ******  *    *  *    

consensus_8471#0      AGGGTTCGACAATACGGGCAAC----CCGGTCCCGGCGCTGAACCCGAAGAAGAAGGTGT 1609
consensus_8471#1      AGGGGGCGACAAAACGGGCAAC----CCGGGCCCGGCGCCGA------------------ 570
consensus_8471#2      CGGTTGCAANCAGTCGATCTCCGGTGTAGGGATGATTANNNAG----------------- 552
                       **   * *  *  **  *  *      **           *                  

consensus_8471#0      GGGACAAGATTCAGGCGGACTGCACACCGGCACGGACGGACAGGCACTGTGGAAGGAGTT 1669
consensus_8471#1      ------------------------------------------------------------
consensus_8471#2      ------------------------------------------------------------
                                                                                  

consensus_8471#0      TTCGCTGATGGCGCTGAACGGGGATCGGGTAACGAGCACGCTGGCAGGATGTAGCATCAA 1729
consensus_8471#1      ------------------------------------------------------------
consensus_8471#2      ------------------------------------------------------------
                                                                                  

consensus_8471#0      GTAGACCCGTGGCTAAGAAGGAGAGAAGGGACCTCTGTGTTTACGATGGCATTTCGCGAC 1789
consensus_8471#1      ------------------------------------------------------------
consensus_8471#2      ------------------------------------------------------------
                                                                                  

consensus_8471#0      CGCTGTTGCGCTTTGAGAGTCTTATTTTTTGGTGAACATTTTGTTGCAACATCATCTCCG 1849
consensus_8471#1      ------------------------------------------------------------
consensus_8471#2      ------------------------------------------------------------
                                                                                  

consensus_8471#0      TTAGGATGATTAAAAACGCATGTTTTTACACTCATTTCATACTTTTGCAGAGAGTAATTT 1909
consensus_8471#1      ------------------------------------------------------------
consensus_8471#2      ------------------------------------------------------------
                                                                                  

consensus_8471#0      ATTAAAGTCGGCATCGCAAATGATTCAAACATAAAAAAAAAA 1951
consensus_8471#1      ------------------------------------------
consensus_8471#2      ------------------------------------------
                                                                




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)