|
These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8473#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 1315 fasta sequence
[CGAGCAACAAAAAAAACCGACACACCACACTTCATTGTGAATTTACGAAAAACTGGCAACGAACACCGTCATCGT-GA-GA-CGGAGGAA-AAGTGGAAAAGCTTTCTCGTTGCATTGGTTCTGTGAGTCTGAAGGCAAACACGGTGGCAATAGGAAAATTCCAACCCAGTGTCGCTTCAAGGAATCAGG-AAAAAACGGACCTCCAAAACACGCCGGTTGAAGGAGAGGAGCAGCGTTTTGCGGTTGTACGCGTGAAAAACGAACAGGGAAGCGGTGCGGGCCTATTATCAAATCTACACCCGCAGGCGGAGGAGTCTGCAAAGGTCCGGCGGGTGGACGGTGGTGTTTCGTCCTTTCGTCCTTTCGTCGTATCCGCGGCGACGGAATGAAGTGTTTATCCGGTGCGGTGCGACGATAGCCCAACCCCCTCCCACCAATCGGTTTCAAATTTCCCACCACCCCAAAACGACAGTGATAGACACATTTCCCGGGGCACAGCACACCAAGCTAAAGCGGGGCGTGTGTCTATGTATGCGCACCGGTGTGTGTGTCGTACTGANACAATCGATCGTTGGGCTGTGTACACCTTACCGGTTTGTGGGTGNGGTTTGTGTTTTATAATAGACNAAACATCATTAGCCGCGGCCCAACCCACGGGCGGGGACAAAAGGCAAAAAAGGAAATATCAGCGAATTACATCCGGGTCGTCTTCACTTCACCCAGTGCCTCACATACATACACACCAAGCAGCAGGAGCAGCAGCAGCACCAGCATCGCCATGACCGCCA-CCAGCACGACCGAACCGGCGGCATTCGATCACATCGAGACGATTGTCATCGAGGGTCAGCCGACCGACATCGTGTACCATCGGTTTGCGAACAAGCTCTTCCTCATCATCACCCAGCACCAGAAGGTGGCCAACGTGTACACGGTGCGCAGTCACGCCCACAACGATCTGAGCGGGGACGGGCCGGGCGGAGCTGCCGGCGCTGACGGTTCGAACCGCATCTACACCATCAAGCACACGTTCGGCGCCAGCTCGGACGAGGCGGAAGCGGCCATCCGCTATCTGATGAGCTTCCTGCAGCAGAGCGACGAGATCGTCATCACGCTCGGGCTGCGGCGGATCGACAAGGCCACGCTGGACCAGATCGGGGCCCAGCTCCGGAAGATTGTGCTAGGATAGGGCATAAGGGGGAAGTGGCAGAATAATATTCTAACCGTTGGTACATACGTTCCTTTCCGTTCTTAGGAGTTTCTTAAATAAATACGCGTACACACGTTCACGCTTTGGTGGCGCGCCACACAAAAAAAAAAA]
[+] EMBL BX602071 [CGAGCAACAAAAAAAACCGACACACCACACTTCATTGTGAATTTACGAAAAACTGGCAACGAACACCGTCATCGT GA GA CGGAGGAA AAGTGGAAAAGCTTTCTCGTTGCATTGGTTCTGTGAGTCTGAAGGCAAACACGGTGGCAATAGGAAAATTCCAACCCAGTGTCGCTTCAAGGAATCAGG AAAAAACGGACCTCCAAAACACGCCGGTTGAAGGAGAGGAGCAGCGTTTTGCGGTTGTACGCGTGAAAAACGAACAGGGAAGCGGTGCGGGCCTATTATCAAATCTACACCCGCAGGCGGAGGAGTCTGCAAAGGTCCGGCGGGTGGACGGTGGTGTTTCGTCCTTTCGTCCTTTCGTCGTATCCGCGGCGACGGAATGAAGTGTTTATCCGGTGCGGTGCGACGATAGCCCAACCCCCTCCCACCAATCGGTTTCAAATTTCCCACCACCCCAAAACGACAGTGATAGACACATTTCCCGGGGCACAGCACACCAAGCTAAAGCGGGGCGTGTGTCTATG ]
[+] EMBL BX604170 [ TTGTGAATTTACGAAAAACTGGCAACGAACACCGTCATCGT GA GA CGGAGGAA AAGTGGAAAAGCTTTCTCGTTGCATTGGTTCTGTGAGTCTGAAGGCAAACACGGTGGCAATAGGAAAATTCCAACCCAGTGTCGC TCAAGGAATCAGG AAAAAACGGACCTCCAAAACACGCCGGTTGAAGGAGAGGAGCAGCGT ]
[+] EMBL BX624220 [ aCGTAGATGATCGGAGGAATAAGTGGAAAAGCTTTCTCGTTGCATTGGTTCTGTGAGTCTGAAGGCAAACACGGTGGCAATAGGAAAATTCCAACCCAGTGTCGCTTCAAGGAATCAGG AAAAAACGGACCTCCAAAACACGCCGGTTGAAGGAGAGGAGCAGCGTTTTGCGGTTGTACGCGTGAAAAACGAACAGGGAAGCGGTGCGGGCCTATTATCAAATCTACACCCGCAGGCGGAGGAGTCTGCAAAGGTCCGGCGGGTGGACGGTGGTGTTTCGTCCTTTCGTCCTTTCGTCGTATCCGCGGCGACGGAATGAAGTGTTTATCCGGTGCGGTGCGACGATAGCCCAACCCCCTCCCACCAATCGGTNTCAAATTTCCCACCACCCCAAAACGACAGTGATAGACACATTTCCCGGGGCACAGCACACCAAGCTAAAGCGGGGCGTGTGTCTATGTATGCGCACCGGTGTGTGTGTCGTACTGANACAATCGATCGTTGGGCTGTGTACACCTTACCGGTTTGTGGGTGNGGTTTGTGTTTTATAATAGACNAAACATC ]
[+] EMBL BX612812 [ AATTCCAACCCAGTGTCGCTTCAAGGAATCAGGAAAAAAACGGACCTCCAAAACACGCCGGTTGAAGGAGAGGAGCAGCGTTTTGCGGTTGTACGCGTGAAAAACGAACAGGGAAGCGGTGCTGGCCTATTATCAAATCTACACCCACAGGCGGAGGAGTCTGCAAAGGCCCAACGGGTGGACGGTGGTGTTTCGTCCTTTCGTCCTTTCGTCGTATCCGCGGCGACGGAATGAAGTGTTTATCCGGTGCGGTGCGACGATAGCCCAACCCCCTCCCACCAATCGGTTTCAAATTTCCCACCACCCCAAAACGACAGTGATAGACACATTTCCCGGGGCACAGCACACCAAGCTAAAGCGGGGCGTGTGTCTATGTATGCGCACCGGTGTGTGTGTCGTACTGAAACAATCGATCGTTGGCCTGTGTACACCTTACCGGTTTGT GGTGGGGTTTGTGTTTTATTTTAGAC AAACATCATTAGCCGCGGCCCAACCCACGGGCGGGGACAAAAGGCAAAAAAGGAAATATCAGCGAATTACATCCGGGTCGTCTTCACTTCACCCAGTGCCTCACATACACATACACCGAGCAGCAGGAGCAGCAGCAGCACCAGCATCACCATGACCGCCACCCAGCACGACCGAACCGGCGGCATTCGATCACATCGAGACGATTGTCATCGAGGGTCAGCCGACCGACATCGTGTACCATCGGTTTGCCAACAAGCTCTTCCTCATCATCACCCAGCACCAAAAGGTG ]
[+] EMBL BX621854 [ GTGCCTCACACACATACACACCAAGCAGCAGGAGCAGCAGCAGCACCAGCATCGCCATGACCGCCA CCAGCACGACCGAACCGGCGGCATTCGATCACATCGAGACGATTGTCATCGAGGGTCAGCCGACCGACATCGTGTACCATCGGTTTGCGAACAAGCTCTTCCTCATCATCACCCAGCACCAGAAGGTGGCCAACGTGTACACGGTGCGCAGTCACGCCCACAACGATCTGAGCGGGGACGGGCCGGGCGGAGCTGCCGGCGCTGACGGTTCGAACCGCATCTACACCATCAAGCACACGTTCGGCGCCAGCTCGGACGAGGCGGAAGCGGCCATCCGCTATCTGATGAGCTTCCTGCAGCAGAGCGACGAGATCGTCATCACGCTCGGGCTGCGGCGGATCGACAAGGCCACGCTGGACCAGATCGGGGCCCAGCTCCGGAAGATTGTGCTAGGATAGGGCATAAGGGGGAAGTGGCAGAATAATATTCTAACCGTTGGTACATACGTTCCTTTCCGTTCTTAGGAGTTTCTTAAATAAATACGCGTACACACGTTCACGCTTTGGTGGCGCGCCACA ]
[+] EMBL BX608682 [ TACACACCAAGCAGCAGGAGCAGCAGCAGCACCAGCATCGCCATGACCGCCA CCAGCACGACCGAACCGGCGGCATTCGATCACATCGAGACGATTGTCATCGAGGGTCAGCCGACCGACATCGTGTACCATCGGTTTGCGAACAAGCTCTTCCTCATCATCACCCAGCACCAGAAGGTGGCCAACGTGTACACGGTGCGCAGTCACGCCCACAACGATCTGAGCGGGGACGGGCCGGGCGGAGCTGCCGGCGCTGACGGTTCGAACCGCATCTACACCATCAAGCACACGTTCGGCGCCAGCTCGGACGAGGCGGAAGCGGCCATCCGCTATCTGATGAGCTTCCTGCAGCAGAGCGACGAGATCGTCATCACGCTCGGGCTGCGGCGGATCGACAAGGCCACGCTGGACCAGATCGGGGCCCAGCTCCGGAAGATTGTGCTAGGATAGGGCATAAGGGGGAAGTGGCAGAATAATATTCTAACCGTTGGTACATACGTTCCTTTCCGTTCTTAGGAGTTTCTTAAATAAATACGCGTACACACGTTCACGCTTTGGTGG ]
[-] EMBL AGA281035 [ ACGCTCGGGCTGCGGCGGATCGACAAGGCCACGCTGGACCAGATCGGGGCCCAGCTCCGGAAGATTGTGCTAGGATAGGGCATAAGGGGGATGCGGCAGAGGAATATTCTAACCGTTGGTACATACGTTTCTTTCCGTTCTTAGGAGTTTCTTAAATAAATACGCGTACACACGTTCACGCTTTGGTGGCGCGCCACACAAAAAA ]
[+] EMBL AGA282663 [ CTGCGGCGGATCGACAAGGCCACGCTGGACCAGATCGGGGCCCAGCTCCGGAAGATTGTGCTAGGATAGGGCATAAGGGGGATGCGGCAGAGGAATATTCTAACCGTTGGTACATACGTTTCTTTCCGTTCTTAGGAGTTTCTTAAATAAATACGCGTACACACGTTCACGCTTTGGTGGCGCGCCACACANNANAAAAAA]
consensusID : consensus_8473#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 693 fasta sequence
[CCGCCCACGCGTCCGCCCACGCGTCCGCGAAAAACTGGCAACGAACACCGTCATCGTGAGACGGAGGAAAAGTGGAAAAGCTTTCTCGTTGCATTGGTTCTGTGAGTCTGAAGGCAAACACGGTGGCAATAGGAAAATTCCAACCCAGTGTCGCTTCAAGGAATCAGGAAAAAACGGACCTCCAAAACACGCCGGTTGAAGGAGAGGAGCAGCGTTTTGCGGTTGTACGCGTGAAAAACGAACAGGGAAGCGGTGCGGGCCTATTATCAAATCTACACCCGCAGGCGGAGGAGTCTGCAAAGGTCCGGCGGGTGGACGGTGGTGTTTCGTCCTTTCGTCCTTTCGTCGTATCCGCGGCGACGGAATGAAGTGTTTATCCGGTGCGGTGCGACGAATAGCCCAACCCCCTCCCACCAATCGGTTTCAAATTTCCCACCACCCCAAAACGACAGTGATAGACACATTTCCCGGGGCACAGCACACCAAGCTAAAGCGGGGCGTGTGTCTATGTATGCGCACCGGTGTGTGTGTCGTACTGAAACAATCGATCGTTGGCCTGTGTACACCTTACCGGTTTGTGGGGGGGGGTTTTGTGTTTTATTTTAGACAAACATCATTAGCCGCGGCCCAACCCACGGGCGGGGACAAAAGGCAAAAACGGAAATATCAGCGAATTACATCCGGGTCGTCTTC]
[+] EMBL BM577231 [CCGCCCACGCGTCCGCCCACGCGTCCGCGAAAAACTGGCAACGAACACCGTCATCGTGAGACGGAGGAAAAGTGGAAAAGCTTTCTCGTTGCATTGGTTCTGTGAGTCTGAAGGCAAACACGGTGGCAATAGGAAAATTCCAACCCAGTGTCGCTTCAAGGAATCAGGAAAAAACGGACCTCCAAAACACGCCGGTTGAAGGAGAGGAGCAGCGTTTTGCGGTTGTACGCGTGAAAAACGAACAGGGAAGCGGTGCGGGCCTATTATCAAATCTACACCCGCAGGCGGAGGAGTCTGCAAAGGTCCGGCGGGTGGACGGTGGTGTTTCGTCCTTTCGTCCTTTCGTCGTATCCGCGGCG ]
[+] EMBL BM606721 [ CCGCGGACGCGT GGGAAAAACTGGCAACGAACACCGTCATCGTGAGACGGAGGAAAAGTGGAAAAGCTTTCTCGTTGCATTGGTTCTGTGAGTCTGAAGGCAAACACGGTGGCAATAGGAAAATTCCAACCCAGTGTCGCTTCAAGGAATCAGGAAAAAACGGACCTCCAAAACACGCCGGTTGAAGGAGAGGAGCAGCGTTTTGCGGTTGTACGCGTGAAAAACGAACAGGGAAGCGGTGCGGGCCTATTATCAAATCTACACCCGCAGGCGGAGGAGTCTGCAAAGGTCCGGCGGGTGGACGGTGGTGTTTCGTCCTTTCGTCCTTTCGTCGTATCCGCGGCGACGGAATGAAGTGTTTATCCGGTGCGGTGCGACGAATAGCCCAACCCCCTCCCACCAATCGGTTTCAAATTTCCCACCACCCCAAAACGACAGTGATAGACACATTTCCCGGGGCACAGCACACCAAGCTAAAGCGGGGCGTGTGTCTATGTATGCGCACCGGTGTGTGTGTCGTACTGAAACAATCGATCGTTGGCCTGTGTACACCTTACCGGTTTGTGGGGGGGGGTTTTGTGTTTTATTTTAGACAAACATCATTAGCCGCGGCCCAACCCACGGGCGGGGACAAAAGGCAAAAACGGAAATATCAGCGAATTACATCCGGGTCGTCTTC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8473#0 CGAGCAACAAAAAAAACCGACACACCACACTTCATTGTGAATTTACGAAAAACTGGCAAC 60
consensus_8473#1 -----------------CCGCCCAC-GCGTCCGCCCACGCGTCCGCGAAAAACTGGCAAC 42
* * *** * * * ***************
consensus_8473#0 GAACACCGTCATCGTGAGACGGAGGAAAAGTGGAAAAGCTTTCTCGTTGCATTGGTTCTG 120
consensus_8473#1 GAACACCGTCATCGTGAGACGGAGGAAAAGTGGAAAAGCTTTCTCGTTGCATTGGTTCTG 102
************************************************************
consensus_8473#0 TGAGTCTGAAGGCAAACACGGTGGCAATAGGAAAATTCCAACCCAGTGTCGCTTCAAGGA 180
consensus_8473#1 TGAGTCTGAAGGCAAACACGGTGGCAATAGGAAAATTCCAACCCAGTGTCGCTTCAAGGA 162
************************************************************
consensus_8473#0 ATCAGGAAAAAACGGACCTCCAAAACACGCCGGTTGAAGGAGAGGAGCAGCGTTTTGCGG 240
consensus_8473#1 ATCAGGAAAAAACGGACCTCCAAAACACGCCGGTTGAAGGAGAGGAGCAGCGTTTTGCGG 222
************************************************************
consensus_8473#0 TTGTACGCGTGAAAAACGAACAGGGAAGCGGTGCGGGCCTATTATCAAATCTACACCCGC 300
consensus_8473#1 TTGTACGCGTGAAAAACGAACAGGGAAGCGGTGCGGGCCTATTATCAAATCTACACCCGC 282
************************************************************
consensus_8473#0 AGGCGGAGGAGTCTGCAAAGGTCCGGCGGGTGGACGGTGGTGTTTCGTCCTTTCGTCCTT 360
consensus_8473#1 AGGCGGAGGAGTCTGCAAAGGTCCGGCGGGTGGACGGTGGTGTTTCGTCCTTTCGTCCTT 342
************************************************************
consensus_8473#0 TCGTCGTATCCGCGGCGACGGAATGAAGTGTTTATCCGGTGCGGTGCGACGA-TAGCCCA 419
consensus_8473#1 TCGTCGTATCCGCGGCGACGGAATGAAGTGTTTATCCGGTGCGGTGCGACGAATAGCCCA 402
**************************************************** *******
consensus_8473#0 ACCCCCTCCCACCAATCGGTTTCAAATTTCCCACCACCCCAAAACGACAGTGATAGACAC 479
consensus_8473#1 ACCCCCTCCCACCAATCGGTTTCAAATTTCCCACCACCCCAAAACGACAGTGATAGACAC 462
************************************************************
consensus_8473#0 ATTTCCCGGGGCACAGCACACCAAGCTAAAGCGGGGCGTGTGTCTATGTATGCGCACCGG 539
consensus_8473#1 ATTTCCCGGGGCACAGCACACCAAGCTAAAGCGGGGCGTGTGTCTATGTATGCGCACCGG 522
************************************************************
consensus_8473#0 TGTGTGTGTCGTACTGANACAATCGATCGTTGGGCTGTGTACACCTTACCGGTTTGTGGG 599
consensus_8473#1 TGTGTGTGTCGTACTGAAACAATCGATCGTTGGCCTGTGTACACCTTACCGGTTTGTGGG 582
***************** *************** **************************
consensus_8473#0 TGNGG--TTTGTGTTTTATAATAGACNAAACATCATTAGCCGCGGCCCAACCCACGGGCG 657
consensus_8473#1 GGGGGGTTTTGTGTTTTATTTTAGACAAA-CATCATTAGCCGCGGCCCAACCCACGGGCG 641
* ** ************ ***** ** ******************************
consensus_8473#0 GGGACAAAAGGCAAAAAAGGAAATATCAGCGAATTACATCCGGGTCGTCTTCACTTCACC 717
consensus_8473#1 GGGACAAAAGGCAAAAACGGAAATATCAGCGAATTACATCCGGGTCGTCTTC-------- 693
***************** **********************************
consensus_8473#0 CAGTGCCTCACATACATACACACCAAGCAGCAGGAGCAGCAGCAGCACCAGCATCGCCAT 777
consensus_8473#1 ------------------------------------------------------------
consensus_8473#0 GACCGCCACCAGCACGACCGAACCGGCGGCATTCGATCACATCGAGACGATTGTCATCGA 837
consensus_8473#1 ------------------------------------------------------------
consensus_8473#0 GGGTCAGCCGACCGACATCGTGTACCATCGGTTTGCGAACAAGCTCTTCCTCATCATCAC 897
consensus_8473#1 ------------------------------------------------------------
consensus_8473#0 CCAGCACCAGAAGGTGGCCAACGTGTACACGGTGCGCAGTCACGCCCACAACGATCTGAG 957
consensus_8473#1 ------------------------------------------------------------
consensus_8473#0 CGGGGACGGGCCGGGCGGAGCTGCCGGCGCTGACGGTTCGAACCGCATCTACACCATCAA 1017
consensus_8473#1 ------------------------------------------------------------
consensus_8473#0 GCACACGTTCGGCGCCAGCTCGGACGAGGCGGAAGCGGCCATCCGCTATCTGATGAGCTT 1077
consensus_8473#1 ------------------------------------------------------------
consensus_8473#0 CCTGCAGCAGAGCGACGAGATCGTCATCACGCTCGGGCTGCGGCGGATCGACAAGGCCAC 1137
consensus_8473#1 ------------------------------------------------------------
consensus_8473#0 GCTGGACCAGATCGGGGCCCAGCTCCGGAAGATTGTGCTAGGATAGGGCATAAGGGGGAA 1197
consensus_8473#1 ------------------------------------------------------------
consensus_8473#0 GTGGCAGAATAATATTCTAACCGTTGGTACATACGTTCCTTTCCGTTCTTAGGAGTTTCT 1257
consensus_8473#1 ------------------------------------------------------------
consensus_8473#0 TAAATAAATACGCGTACACACGTTCACGCTTTGGTGGCGCGCCACACAAAAAAAAAAA 1315
consensus_8473#1 ----------------------------------------------------------
|
| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||