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Anopheles gambiae
cluster # 8520 cluster # 8520       Sequences # 11       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8520#0 length = 1314 sequences # 9  
consensus_8520#1 length = 685 sequences # 1  
consensus_8520#2 length = 599 sequences # 1  

consensusID : consensus_8520#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 9
consensus length = 1314
fasta sequence
                              [CCGCTAAAATACTGAATAGAATTTTTGGATCGCGTAATGATCTAC-AAAAAAGACACTTTTTAATGTAATCAGCAAA-AAAACTTGCAACTGGCGTTAAGCTGTCAAGC-GGACAGAGAGCAAAGTCCAAGATCAAGTAGAAGAGACACAATAAGCAGAGCTACGAAAACATAGAAAGTGCGGAAAGATAACACAGTTCGCAAGTCGTAATTTGGGGCAGGTAACGAAACATTTCGGGCATGGCGACCAACTTTCGGAACACAACCCTCAATGAGGAACGAATATTTGGCAATACAAGTG-GGCTAAACACGTCAGCTGGAGTAATTCCTACGAATCATCCACCACCTTTGCCACCGAGACCACAGTTTTCGGGTGGTGGGGG-AGATATGATGTTCGGTAATCGGTATGGATTTCCTGGCCAATCTGGATATCACAGCTACAGCCCGTACGGAGGATATTCCTCTATGGATTATTATGGCCACAGGAGCTACGGTGGATATGGAGGGTACGGTCAAGGATATGGAGGAGGATACGGTAACCCCGGTGGTGGGTTCAATTACCCGGAACACAGGTTTATTCAGTTAGCAGAAGAAAGTTCGCGGCCCGCCTTTCAGATCCTTGAATCGCTCGTCGGCGCAGTTGGCAATGTGGCGACGATGCTAGACTCTACCTTCTTTGCCGTCACCAGCTCATTCCGTGCCGTGCTGAGTGTGGCAGCAAATTT-GGCGCACCTGAAGGGAACGTTTGCCCAGTTCTGGTCATCTTTGGCTGTTGTGCGAGCG-GCCG-TGTGGTTGTATAAAAAGATGCTGTACAAACTG-AGGATAACGAAAACAGATCCCACGTTGGAGGCATTCAAAGAAGCGTTTAATGTATCTACTGGTAGCGATGTGAACGGTAACAACAACGGCAGAAAACATTCATCCTCACTTTTAGCAGCACTATTCATGGGTTTCATGCTCTCCGTA-CCCTATATGCTGATAAAACTGTTTGCACCAAAAGTCAGCGAAGATACTGCACTAAGCGATCCTGCCATGTGGAACAATCCAGTGGAGGTGCAGGCATTGCACAATTTCGATGCCTCCAACGCTCAGGAGATGTCGATCCGTGCGGGACAATCGGTGTTACTTGCGCCGAAGCAAATTCAAACCGACCGACATTTGCTGAACAGTGGATGGGTACTAGCGGCTACAGCCGATCGACGAACGTCCGGAATCATTCCACTAAACTATGTACAAGCGCTGAAACAATCTGTCGAGAGTCAGTAGATAATTAAAAATATTAGCGGGTCTGGTATCTTACAGTGATTTCAATAAAATG]

[+] EMBL BM612534             [CCGCTAAAATACTGAATAGAATTTTTGGATCGCGTAATGATCTACAAAAAAAGACACTTTTTAATGTAATCAGCAAAGAAAACTTGCAACTGGCGTTAAGCTGTCAAGC GGACAGAGAGCAAAGTCCAAGATCAAGTAGAAGAGACACAATAAGCAGAGCTACGGAAACATAGAAAGTGCGGAAAGATAACACAGTTCGCAAGTCGTAATTTGGAGCAGGTAACGAAATATTTCGGGCATGGCGACCAACTTTCGGAACACAACCCTCAATGAGGAACGAATATTTGGCAATACAAGTG GACTAAACACGTCAGCTGGAGTAATTCCTACGAATCATCCGCCACCTTTGCCACCGAGACCACAGTTTTCGGGTGGTGGGGGAAGATATGATGTTCGGTAATCGGTATGGATTTCCTGGCCAATCTGGATATCACAGCTACAGCCCGTACGGAGGATATTCCTCTATGGATTATTATGGCCACAGGAGCTACGGTGGATATGGAGGGTACGGTCAAGGATATGGAGGAGGATACGGTAACCCCGGTGGTGGGTTCAATTACCCGGAACACAGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL CNS08JJF             [                                        aCTAC AAAAAAGACACTTTTTAATGTAATCAGCAAA AAAACTTGCAACTGGCGTTAAGCTGTCAAGCGGGACAGAGAGCAAAGTCCAAGATCAAGTAGAAGAGACACAATAAGCAGAGCTACGAAAACATAGAAAGTGCGGAAAGATAACACAGTTCGCAAGTCGTAATTTGGGGCAGGTAACGAAACATTTCGGGCATGGCGACCAACTTTCGGAACACAACCCTCAATGAGGAACGAATATTTGGCAATACAAGTG GACTAAACACGTCAGCTGGAGTAATTCCTACGAATCATCCACCACCTTTGCCACCGAGACCACAGTTTTCGGGTGGTGGGGG AGATATGATGTTCGGTAATCGGTATGGATTTCCTGGCCAATCTGGATATCACAGCTACAGCCCGTACGGAGGATATTCCTCTATGGATTATTATGGCCACAGGAGCTACGGTGGATATGGAGGGTACGGTCAAGGATATGGAGGAGGGTACGGTAACCCCGGTGGTGGGTTCAATTACCCGGAACACAGGTTTATTCAGTTAGCAGAAGAAAGTTCGCGGCCCGCCTTTCAGATCCTTGAATCGCTCGTCGGCGCAGTTGGCAATGTGGCGACGATGTTAGACTCTACCTTCTTTGCCGTCACCAGCTCATTCCGTGCCGTGCTGAGTGTGGCAGCAAATTT GGCGCACCTGAAGGGAACGTTTGCCCAGTTCTGGTCATCTTTGGCTGTTGTGCGAGCG GCCG TGTGGTTGTATAAAAAGATGCTGTACAAACTG AGGATAACGAAAACAGATCCCACGTTGGAGGCATTCAAAGAAGCGTTTAATGTATCTACTGGTAGCGATGTGAACGGTAACAACAACGGCAGAAAACATTCATCCTCACTTTTAGCAGCACTATTC                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL CNS08SXM             [                                                                                                                                                    CAATAAGAAGAGCTACGAAAACATAGAAAGTGCGGAAAGATAACACAGTTCGCAAGTCGTAATTTGGGACAGGTAACGAAACATTTCGGGCATGGCGACCAACTTTCGGAACACAACGCTCAATGAGGAACGAATATTTGGCAATACAAATGCGGCTAAACACGTCAGCTGGAGTAATTCCTACGAATCATCCACCACCTTTGCCACCGAGACCACAGTTTTCGGGTGGTGGGGG AGATATGATGTTCGGTAATCGGTATGGATTTCCTGGCCAATCTGGATATCACAGCTACAGCCCGTACGGAGGATATTCCTCTATGGATTATTATGGCCACAGGAGCTACGGTGGATATGGAGGGTACGGTCAAGGATATGGAGGAGGATACGGTAACCCCGGTGGTGGGTTCAATTACCCGGAACACAGGTTTATTCAGTTAGCAGAAGAAAGTTCGCGGCCCGCCTTTCAGATCCTTGAATCGCTCGTCGGCGCAGTTGGCAATGTGGCGACGATGCTAGACTCTACCTTCTTTGCCGTCACCAGCTCATTCCGTGCCGTGCTGAGTGTGGCAGCAAATTT GGCGCACCTGAAGGGAACGTTTGCCCAGTTCTGGTCATCTTTGGCTGTTGTGCGAGCGCGCCGCTGTGGTTGTATAAAAAGATGCTGTACAAACTGCAGGATAACGAAAACAGATCCCACGTTGGAGGCATTCAAAGAAGCGTTTAATGTATCTACTGGTAGCGATGTGAACGGTAACAACAACGGCAGAAAACATTCATCCTCACTTTTAGCAGCACTATTCATGGGTTTCATGCTCTCCGTA CCCTATATGCTGATAAAACTGTTTGCACCAAAAGTCAGCGAAGATACTGCACTAAGCGATCCTGCCATGTGGAACAATCCAGTGGAGGTGCAGGCATTGCACAATTTCGATGCCTCCAACGCTCAGGAGATGTCGATCCGTGCGGGACAATCGGTGTTACTTGCGCCGAAGCAAATTCAAACCGACCGACATTTGCTGAACAGTGGATGGGTACTAGCGGCTACAGCCGATC                                                                                                                        ]
[+] EMBL BX626996             [                                                                                                                                                                                            TAACACAGTTCGCAAGTCGTAATTTGGGGCAGGTAACGAAACATTTCGGGCATGGCGACCAACTTTCGGAACACAACGCTCAATGAGGAACGAATATTTGGCAATACAAATG GGCTAAACACGTCAGCTGGAGTAATTCCTACGAATCATCCACCACCTTTGCCACCGAGACCACAGTTTTCGGGTGGTGGGGG AGATATGATGTTCGGTAATCGGTATGGATTTCCTGGCCAATCTGGATATCACAGCTACAGCCCGTACGGAGGATATTCCTCTATGGATTATTATGGCCACAGGAGCTACGGTGGATATGGAGGGTACGGTCAAGGATATGGAGGAGGATACGGTAACCCCGGTGGTGGGTTCAATTACCCGGAACACAGGTTTATTCAGTTAGCAGAAGAAAGTTCGCGGCCCGCCTTTCAGATCCTTGAATCGCTCGTCGGCGCAGTTGGCAATGTGGCGACGATGCTAGACTCTACCTTCTTTGCCGTCACCAGCTCATTCCGTGCCGTGCTGAGTGTGGCAGCAAATTT GGCGCACCTGAANGGAACGTTTGCCCAGTTCTGGTCATCTTTGGCTGTTGTGCGAGCG GCCG TGTGGNTGTATAAAAAGATGCTGTACAAACTG AGGATAACGAAAACAGATCCCACGTTGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL BM575464             [                                                                                                                                                                                          ccgAACACAGTTCGCAAGTCGTAATTTGGGACAGGTAACGAAACATTTCGGGCATGGCGACCAACTTTCGGAACACAACGCTCAATGAGGAACGAATATTTGGCAATACAAATG GGCTAAACACGTCAGCTGGAGTAATTCCTACGAATCATCCACCACCTTTGCCACCGAGACCACAGTTTTCGGGTGGTGGGGG AGATATGATGTTCGGTAATCGGTATGGATTTCCTGGCCAATCTGGATATCACAGCTACAGCCCGTACGGAGGATATTCCTCTATGGATTATTATGGCCACAGGAGCTACGGTGGATATGGAGGGTACGGTCAAGGATATGGAGGAGGATACGGTAACCCCGGTGGTGGGTTCAATTACCCGGAACACAGGTTTATTCAGTTAGCAGAAGAAAGTTCGCGGCCCGCCTTTCAGATCCTTGAATCGCTCGTCGGCGCAGTTGGCAATGTGGCGACGATGCTAGACTCTACCTTCTTTGCCGTCACCAGCTCATTCCGTGCCGTGCTGAGTGTGGCAGCAAATTT GGCGCACCTGAAGGGAACGTTTGCCCAGTTCTGGTCATCTTTGGCTGTTGTGCGAGCG GCCG TGTGGTTGTATAAAAAGATGCTGTACAAACTG AGGATAACGAAAACAGATCCCACGTTGGAGGCATT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL AGA283271            [                                                                                                                                                                                                                                                              CGGAACACAACCCTCAATGAGGAACGAATATTTGGCAATACAAGTG GGCTAAACACGTCAGCTGGAGTAATTCCTACGAATCATCCGCCACCTTTGCCACCGAGACCACAGTTTTCGGGTGGTGGGGG AGATATGATGTTCGGTAATCGGTATGGATTTCCTGGCCAATCTGGATATCACAGCTACAGCCCGTACGGAGGATATTCCTCTATGGATTATTATGGCCACAGGAGCTACGGTGGATATGCAGGGTACGGTCAAGGATATGGAGGAGGATACGGTAACCCCGGTGGTGGGTTCAATTACCCGGAACACAGGTTTATTCAGTTAGCAGAAGAAAGTTCGCGGCCCGCCTTTCAGATCCTTGAATCGCTCGTCGGCGCAGTTGGCAATGTGGCGACGATGTTAGACTCTACCTTCTTTGCCGTCACCAGCTCATTCCGTGCCGTGCTGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[-] EMBL CNS08JJG             [                                                                                                                                                                                                                                                                                                                                                                                                                                                 aACAGCTACAGCCCGTACGGAGGATATTCCTCTATGGATTATTATGGCCACAGGAGCTACGGTGGATATGGAGGGTACGGTCAAGGATATGGAGGAGGGTACGGTAACCCCGGTGGTGGGTTCAATTACCCGGAACACAGGTTTATTCAGTTAGCAGAAGAAAGTTCGCGGCCCGCCTTTCAGATCCTTGAATCGCTCGTCGGCGCAGTTGGCAATGTGGCGACGATGTTAGACTCTACCTTCTTTGCCGTCACCAGCTCATTCCGTGCCGTGCTGAGTGTGGCAGCAAATTTGGGCGCACCTGAAGGGAACGTTTGCCCAGTTCTGGTCATCTTTGGCTGTTGTGCGAGCG GCCG TGTGGTTGTATAAAAAGATGCTGTACAAACTG AGGATAACGAAAACAGATCCCACGTTGGAGGCATTCAAAGAAGCGTTTAATGTATCTACTGGTAGCGATGTGAACGGTAACAACAACGGCAGAAAACATTCATCCTCACTTTTAGCAGCACTATTCATGGGTTTCATGCTCTCCGTA CCATATATGCTGATAAAACTGTTTGCACCAAAAGTCAGCGAAGATACTGCACTAAGCGATCCTGCCATGTGGAACAATCCAGTGGAGGTGCAGGCATTGCACAATTTCGATGCCTCCAACGCTCAGGAGATGTCGATCCGTGCGGGACAATCGGTGTTACTTGCGCCGAAGCAAATTCAAACCGACCGACATTTGCTGAACAGTGGATGGGTACTAGCGGCTACAGCCGATCGACGAACGTCCGGAATCATTCCACTAAACTATGTACAAGCGCTGAAACAATCTGTCGAGAGTCAGTAGATAATTAAAAATATTAGCGGGTCTGGTATCTTACAGTGATTTCAATAAAATG]
[+] EMBL BM604191             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ccgCAGGTTTATTCAGTTAGCAGAAGAAAGTTCGCGGCCCGCCTTTCAGATCCTTGAATCGCTCGTCGGCGCAGTTGGCAATGTGGCGACGATGCTAGACTCTACCTTCTTTGCCGTCACCAGCTCATTCCGTGCCGTGCTGAGTGTGGCAGCAAATTT GGCGCACCTGAAGGGAACGTTTGCCCAGTTCTGGTCATCTTTGGCTGTTGTGCGAGCG GCCG TGTGGTTGTATAAAAAGATGCTGTACAAACTG AGGATAACGAAAACAGATCCCACGTTGGAGGCATTCAAAGAAGCGTTTAATGTATCTACTGGTAGCGATGTGAACGGTAACAACAACGGCAGAAAACATTCATCCTCACTTTTAGCAGCACTATTCATGGGTTTCATGCTCTCCGTACCCCTATATGCTGATAAAACTGTTTGCACCAAAAGTCAGCGA                                                                                                                                                                                                                                                                                                                       ]
[-] EMBL CNS09DV7             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             GTTTATTCAGTTAGCAGAAGAAAGTTCGCGGCCCGCCTTTCAGATCCTTTAATCGCTCGTCGGCGCAGTTGGCAATGTGGCGACGATGCTAGACTCTACCTTTTTTGCCGTCACCAGCTCATTCCGTGCCGTGCTGAGTGTGGCAGCAAATTT GGCGCACCTGAAGGGAACGTTTGCCCAGTTCTGGTCATCTTTGGCTGTTGTGCGAGCG GCCG TGTGGTTGTATAAAAAGATGCTGTACAAACTG AGGATAACGAAAACAGATCCCACGTTGGAGGCATTCAAAGAAGCGTTTAATGTATCTACTGGTAGCGATGTGAACGGTAACAACAACGGCAGAAAACATTCATCCTCACTTTTAGCAGCACTATTCAAGGGTTTCATGCTCTCCGTA CCCTATATGCTGATAAAACTGTTTGCACCAAAAGTCAGCGAAGATACTGCACTAAGCGATCCTGCCATGTGGAACAATCCAGTGGAGGTGCAGGCATTGCACAATTTCGATGCCTCCAACGCTCAGGAGATGTCGATCCGTGCGGGACAATCGGTGTTACTTGCGCCGAAGCAAATTCAAACCGACCGACATTTGCTGAACAGTGGATGGGTACTAGC GCTACAGCCGATCGACGAACGTCCGGAATCATTCCACTAAACTATGTACAAGCGCTGAAACAATCTTTCGAGAGTCAGTAGATAATTAAAAATATTA                                    ]


>consensus_8520#0 CCGCTAAAATACTGAATAGAATTTTTGGATCGCGTAATGATCTACAAAAAAGACACTTTT TAATGTAATCAGCAAAAAAACTTGCAACTGGCGTTAAGCTGTCAAGCGGACAGAGAGCAA AGTCCAAGATCAAGTAGAAGAGACACAATAAGCAGAGCTACGAAAACATAGAAAGTGCGG AAAGATAACACAGTTCGCAAGTCGTAATTTGGGGCAGGTAACGAAACATTTCGGGCATGG CGACCAACTTTCGGAACACAACCCTCAATGAGGAACGAATATTTGGCAATACAAGTGGGC TAAACACGTCAGCTGGAGTAATTCCTACGAATCATCCACCACCTTTGCCACCGAGACCAC AGTTTTCGGGTGGTGGGGGAGATATGATGTTCGGTAATCGGTATGGATTTCCTGGCCAAT CTGGATATCACAGCTACAGCCCGTACGGAGGATATTCCTCTATGGATTATTATGGCCACA GGAGCTACGGTGGATATGGAGGGTACGGTCAAGGATATGGAGGAGGATACGGTAACCCCG GTGGTGGGTTCAATTACCCGGAACACAGGTTTATTCAGTTAGCAGAAGAAAGTTCGCGGC CCGCCTTTCAGATCCTTGAATCGCTCGTCGGCGCAGTTGGCAATGTGGCGACGATGCTAG ACTCTACCTTCTTTGCCGTCACCAGCTCATTCCGTGCCGTGCTGAGTGTGGCAGCAAATT TGGCGCACCTGAAGGGAACGTTTGCCCAGTTCTGGTCATCTTTGGCTGTTGTGCGAGCGG CCGTGTGGTTGTATAAAAAGATGCTGTACAAACTGAGGATAACGAAAACAGATCCCACGT TGGAGGCATTCAAAGAAGCGTTTAATGTATCTACTGGTAGCGATGTGAACGGTAACAACA ACGGCAGAAAACATTCATCCTCACTTTTAGCAGCACTATTCATGGGTTTCATGCTCTCCG TACCCTATATGCTGATAAAACTGTTTGCACCAAAAGTCAGCGAAGATACTGCACTAAGCG ATCCTGCCATGTGGAACAATCCAGTGGAGGTGCAGGCATTGCACAATTTCGATGCCTCCA ACGCTCAGGAGATGTCGATCCGTGCGGGACAATCGGTGTTACTTGCGCCGAAGCAAATTC AAACCGACCGACATTTGCTGAACAGTGGATGGGTACTAGCGGCTACAGCCGATCGACGAA CGTCCGGAATCATTCCACTAAACTATGTACAAGCGCTGAAACAATCTGTCGAGAGTCAGT AGATAATTAAAAATATTAGCGGGTCTGGTATCTTACAGTGATTTCAATAAAATG



consensusID : consensus_8520#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 685
fasta sequence
                              [AATCGCCACAACATGCTAGACTCTACCTTTTTTGCCGTCACCAGCTCATTCCGTGCCGTGCTGAGTGTGGCAGCAAATTTGGCGCACCTGAAGGGAACGTTTGCCCAGTTCTGGTCATCTTTGGCTGTTGTGCGAGCGGCCGTGTGGTTGTATAAAAAGATGCTGTACAAACTGAGGATAACGAAAACAGATCCCCACGTTGGAGGCATTCAAAGAAGCGTTTAATGTATCTACTGGTAGCGATGTGAACGGTTACAACAACGGCAGAAAACATTCATCCTCACTTTTAGCAGCACTATTCATGGGTTTCATGCTCTCCGTACCCTATATGCTGATAAAACTGTTTGCACCAAAAGTCAGCGAAGATACTGCACTAAGCGATCCTGCCATGTGGAACAATCCAGTGGAGGTGCAGGCATTGCACAATTTCGATGCCTCCAACGCTCAGGAGATGTCGATCCGTGCGGGACAATCGGTGTTACTTGCGCCGAAGCAAATTCAAACCGACCGACATTTGCTGAACAGTGGATGGGTACTAGCGGCTACAGCCGATCGACGAACGTCCGGAATCATTCCACTAAACTATGTACAAGCGCTGAAACAATCTGTCGAGAGTCAGTAGATAATTAAAAATATTAGCGGGTCTGGTATCTTACAGTGATTTCAATAAAATGGCTTTTATTGT]

[-] EMBL CNS08SXN             [AATCGCCACAACATGCTAGACTCTACCTTTTTTGCCGTCACCAGCTCATTCCGTGCCGTGCTGAGTGTGGCAGCAAATTTGGCGCACCTGAAGGGAACGTTTGCCCAGTTCTGGTCATCTTTGGCTGTTGTGCGAGCGGCCGTGTGGTTGTATAAAAAGATGCTGTACAAACTGAGGATAACGAAAACAGATCCCCACGTTGGAGGCATTCAAAGAAGCGTTTAATGTATCTACTGGTAGCGATGTGAACGGTTACAACAACGGCAGAAAACATTCATCCTCACTTTTAGCAGCACTATTCATGGGTTTCATGCTCTCCGTACCCTATATGCTGATAAAACTGTTTGCACCAAAAGTCAGCGAAGATACTGCACTAAGCGATCCTGCCATGTGGAACAATCCAGTGGAGGTGCAGGCATTGCACAATTTCGATGCCTCCAACGCTCAGGAGATGTCGATCCGTGCGGGACAATCGGTGTTACTTGCGCCGAAGCAAATTCAAACCGACCGACATTTGCTGAACAGTGGATGGGTACTAGCGGCTACAGCCGATCGACGAACGTCCGGAATCATTCCACTAAACTATGTACAAGCGCTGAAACAATCTGTCGAGAGTCAGTAGATAATTAAAAATATTAGCGGGTCTGGTATCTTACAGTGATTTCAATAAAATGGCTTTTATTGT]


>consensus_8520#1 AATCGCCACAACATGCTAGACTCTACCTTTTTTGCCGTCACCAGCTCATTCCGTGCCGTG CTGAGTGTGGCAGCAAATTTGGCGCACCTGAAGGGAACGTTTGCCCAGTTCTGGTCATCT TTGGCTGTTGTGCGAGCGGCCGTGTGGTTGTATAAAAAGATGCTGTACAAACTGAGGATA ACGAAAACAGATCCCCACGTTGGAGGCATTCAAAGAAGCGTTTAATGTATCTACTGGTAG CGATGTGAACGGTTACAACAACGGCAGAAAACATTCATCCTCACTTTTAGCAGCACTATT CATGGGTTTCATGCTCTCCGTACCCTATATGCTGATAAAACTGTTTGCACCAAAAGTCAG CGAAGATACTGCACTAAGCGATCCTGCCATGTGGAACAATCCAGTGGAGGTGCAGGCATT GCACAATTTCGATGCCTCCAACGCTCAGGAGATGTCGATCCGTGCGGGACAATCGGTGTT ACTTGCGCCGAAGCAAATTCAAACCGACCGACATTTGCTGAACAGTGGATGGGTACTAGC GGCTACAGCCGATCGACGAACGTCCGGAATCATTCCACTAAACTATGTACAAGCGCTGAA ACAATCTGTCGAGAGTCAGTAGATAATTAAAAATATTAGCGGGTCTGGTATCTTACAGTG ATTTCAATAAAATGGCTTTTATTGT



consensusID : consensus_8520#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 599
fasta sequence
                              [CAGCCCACGCGTCCGGAGCTACGAAAACATAGAAAGTGCGGAAAGATAACACAGTTCGCAAAGTCGTAATTTGGGGCAGGTAACGAAACATTTCGGGCATGGCGACCAACTTTCGGAACACAACCCTCAATGAGGAACGAATATTTGGCAATACAAATGGGCTAAACACGTCAGCTGGAGTAATTCCTACGAATCATCCACCACCTTTGCCACCTAGACCACAGTTTTCGGGTGGTGGGGGAGATATGATGTTCGGTAATCGGTATGGATTTCCTGGCCAATCTGGATATCACAGCTACAGCCCGTACGGAGGATATTCCTCTATGGATTATTATGGCCACAGGAGCTACGGTGGATATGGAGGGTACGGTCAAGGATATGGAGGAGGATACGGTAACCCCGGTGGTGGGTTCAATTACCCGGAACACAGGTTTATTCAGTTAGCAGAAGAAAGTTCGCGACCCGCCTTTCAGATCCTTGAATCGCTCGTCGGCGCAGTTGGCAATGTGGCGACGATGCTAGACTCTACCTTCTTTGCCGTCACCAGCTCATTCCGTGCCGTGCTGAGTGTGGCAGCAAATTTGGCGCACCTGAAGGGA]

[+] EMBL BM595557             [CAGCCCACGCGTCCGGAGCTACGAAAACATAGAAAGTGCGGAAAGATAACACAGTTCGCAAAGTCGTAATTTGGGGCAGGTAACGAAACATTTCGGGCATGGCGACCAACTTTCGGAACACAACCCTCAATGAGGAACGAATATTTGGCAATACAAATGGGCTAAACACGTCAGCTGGAGTAATTCCTACGAATCATCCACCACCTTTGCCACCTAGACCACAGTTTTCGGGTGGTGGGGGAGATATGATGTTCGGTAATCGGTATGGATTTCCTGGCCAATCTGGATATCACAGCTACAGCCCGTACGGAGGATATTCCTCTATGGATTATTATGGCCACAGGAGCTACGGTGGATATGGAGGGTACGGTCAAGGATATGGAGGAGGATACGGTAACCCCGGTGGTGGGTTCAATTACCCGGAACACAGGTTTATTCAGTTAGCAGAAGAAAGTTCGCGACCCGCCTTTCAGATCCTTGAATCGCTCGTCGGCGCAGTTGGCAATGTGGCGACGATGCTAGACTCTACCTTCTTTGCCGTCACCAGCTCATTCCGTGCCGTGCTGAGTGTGGCAGCAAATTTGGCGCACCTGAAGGGA]


>consensus_8520#2 CAGCCCACGCGTCCGGAGCTACGAAAACATAGAAAGTGCGGAAAGATAACACAGTTCGCA AAGTCGTAATTTGGGGCAGGTAACGAAACATTTCGGGCATGGCGACCAACTTTCGGAACA CAACCCTCAATGAGGAACGAATATTTGGCAATACAAATGGGCTAAACACGTCAGCTGGAG TAATTCCTACGAATCATCCACCACCTTTGCCACCTAGACCACAGTTTTCGGGTGGTGGGG GAGATATGATGTTCGGTAATCGGTATGGATTTCCTGGCCAATCTGGATATCACAGCTACA GCCCGTACGGAGGATATTCCTCTATGGATTATTATGGCCACAGGAGCTACGGTGGATATG GAGGGTACGGTCAAGGATATGGAGGAGGATACGGTAACCCCGGTGGTGGGTTCAATTACC CGGAACACAGGTTTATTCAGTTAGCAGAAGAAAGTTCGCGACCCGCCTTTCAGATCCTTG AATCGCTCGTCGGCGCAGTTGGCAATGTGGCGACGATGCTAGACTCTACCTTCTTTGCCG TCACCAGCTCATTCCGTGCCGTGCTGAGTGTGGCAGCAAATTTGGCGCACCTGAAGGGA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8520#0      CCGCTAAAATACTGAATAGAATTTTTGGATCGCGTAATGATCTACAAAAAAGACACTTTT 60
consensus_8520#2      ------------------------------------------------------------
consensus_8520#1      ------------------------------------------------------------
                                                                                  

consensus_8520#0      TAATGTAATCAGCAAAAAAACTTGCAACTGGCGTTAAGCTGTCAAGCGGACAGAGAGCAA 120
consensus_8520#2      ------------------------------------------------------------
consensus_8520#1      ---------------------------------AATCGCCACAACATGCTAGACTCTACC 27
                                                                                  

consensus_8520#0      AGTCCAAGATCAAGTAGAAGAGACACAAT-AAGCAGAGCTACGAAAACATAGAAAGTGCG 179
consensus_8520#2      -------------------CAGCCCACGC-GTCCGGAGCTACGAAAACATAGAAAGTGCG 40
consensus_8520#1      TTTTTTGCCGTCACCAGCTCATTCCGTGCCGTGCTGAG-TGTGGCAGCAAATTTGGCGCA 86
                                          *  *         * *** *  *  * ** *    * ** 

consensus_8520#0      GAAAGATAACACAGTTCGCAA-GTC--GTAATTTGGGGCAGGTA-ACGAAACATTTCGGG 235
consensus_8520#2      GAAAGATAACACAGTTCGCAAAGTC--GTAATTTGGGGCAGGTA-ACGAAACATTTCGGG 97
consensus_8520#1      CCTGAAGGGAACGTTTGCCCAGTTCTGGTCATCTTTGGCTGTTGTGCGAGCGGCCGTGTG 146
                           *    **  **  * *  **  ** ** *  *** * *   ***        * *

consensus_8520#0      CATGGCGACCAACTTTCGGAACACAACCCTCAATGAGGAACGAATAT-------TTGGCA 288
consensus_8520#2      CATGGCGACCAACTTTCGGAACACAACCCTCAATGAGGAACGAATAT-------TTGGCA 150
consensus_8520#1      GTTGTATAAAAAGATGCTGTACA-AACTGAGGATAACGAAAACAGATCCCCACGTTGGAG 205
                        **   *  **  * * * *** ***     ** * ***   * **       ****  

consensus_8520#0      ATAC----AAGTGGGCTAAACACGTCAGCTGG-AGTAATTCCTACGAAT-CATCCACCAC 342
consensus_8520#2      ATAC----AAATGGGCTAAACACGTCAGCTGG-AGTAATTCCTACGAAT-CATCCACCAC 204
consensus_8520#1      GCATTCAAAGAAGCGTTTAATGTATCTACTGGTAGCGATGTGAACGGTTACAACAACGGC 265
                        *     *   * * * **    **  **** **  **    ***  * ** * **  *

consensus_8520#0      CTTTGCCACCGAGACCACAGTTTTCG-GGTGGTGGGGG-AGATATGATGTTCGGTAATCG 400
consensus_8520#2      CTTTGCCACCTAGACCACAGTTTTCG-GGTGGTGGGGG-AGATATGATGTTCGGTAATCG 262
consensus_8520#1      AGAAAACATTCAT-CCTCACTTTTAGCAGCACTATTCATGGGTTTCATGCTCTCCGTACC 324
                            **   *  ** ** **** *  *   *       * * * *** **      * 

consensus_8520#0      GTATGGATTTCCTGGCCAATCTGGATATCA---CAGCTACAGC-CCGTACGGAG-GATAT 455
consensus_8520#2      GTATGGATTTCCTGGCCAATCTGGATATCA---CAGCTACAGC-CCGTACGGAG-GATAT 317
consensus_8520#1      CTATATGCTGATAAAACTGTTTGCACCAAAAGTCAGCGAAGATACTGCACTAAGCGATCC 384
                       ***    *       *  * ** *    *   **** *     * * **  ** ***  

consensus_8520#0      TCCTCTATGGATTATTATGGCCACAGGAGCTACGGTGGATATGGAGGGTACGGTCAAGGA 515
consensus_8520#2      TCCTCTATGGATTATTATGGCCACAGGAGCTACGGTGGATATGGAGGGTACGGTCAAGGA 377
consensus_8520#1      TGCCATGTGGAACAATCCAGTGGAGGTGCAGGCATTGCACAATTTCGATGCCTCCAACGC 444
                      * *  * ****  * *   *     *      *  ** * *     * * *   *** * 

consensus_8520#0      TATGGAGGAGG------ATACGGTAACCCCGGTGGTGGGTTCAATTACCCGGA---ACAC 566
consensus_8520#2      TATGGAGGAGG------ATACGGTAACCCCGGTGGTGGGTTCAATTACCCGGA---ACAC 428
consensus_8520#1      TCAGGAGATGTCGATCCGTGCGGGACAATCGGTGTTACTTGCGCCGAAGCAAATTCAAAC 504
                      *  ****  *        * *** *    ***** *   * *    *  *  *   * **

consensus_8520#0      AGGTT--TATTCAGTTAGCAGAAGAAAGTTCGCGGCCCGCCTTTCAGATCCTTGAATCGC 624
consensus_8520#2      AGGTT--TATTCAGTTAGCAGAAGAAAGTTCGCGACCCGCCTTTCAGATCCTTGAATCGC 486
consensus_8520#1      CGACCGACATTTGCTGAACAGTGGATGGGTACTAGCGGCTACAGCCGATCGACGAACGTC 564
                       *      ***   * * ***  **  * *     *        * ****   ***   *

consensus_8520#0      TCG--TCGGCGCAGTTGGCAATGTGGCGACGATGCTAGACTCTACCTTCTTTGCCGTCAC 682
consensus_8520#2      TCG--TCGGCGCAGTTGGCAATGTGGCGACGATGCTAGACTCTACCTTCTTTGCCGTCAC 544
consensus_8520#1      CGGAATCATTCCACTAAACTATGTACAAGCGCTGAAACAATCTG-----TCGAGAGTCAG 619
                        *  **    ** *   * ****     ** **  * * ***      *     **** 

consensus_8520#0      CAGCTCATTCCGTGCCGTGCTGAGTGTGGCAGC--AAATTTGGCGCACCTGAAGGGAACG 740
consensus_8520#2      CAGCTCATTCCGTGCCGTGCTGAGTGTGGCAGC--AAATTTGGCGCACCTGAAGGGA--- 599
consensus_8520#1      TAGATAATTAAAAATATTAGCGGGTCTGGTATCTTACAGTGATTTCAATAAAATGGCTTT 679
                       ** * ***        *   * ** *** * *  * * *     **    ** **    

consensus_8520#0      TTTGCCCAGTTCTGGTCATCTTTGGCTGTTGTGCGAGCGGCCGTGTGGTTGTATAAAAAG 800
consensus_8520#2      ------------------------------------------------------------
consensus_8520#1      TATTGT------------------------------------------------------ 685
                                                                                  

consensus_8520#0      ATGCTGTACAAACTGAGGATAACGAAAACAGATCCCACGTTGGAGGCATTCAAAGAAGCG 860
consensus_8520#2      ------------------------------------------------------------
consensus_8520#1      ------------------------------------------------------------
                                                                                  

consensus_8520#0      TTTAATGTATCTACTGGTAGCGATGTGAACGGTAACAACAACGGCAGAAAACATTCATCC 920
consensus_8520#2      ------------------------------------------------------------
consensus_8520#1      ------------------------------------------------------------
                                                                                  

consensus_8520#0      TCACTTTTAGCAGCACTATTCATGGGTTTCATGCTCTCCGTACCCTATATGCTGATAAAA 980
consensus_8520#2      ------------------------------------------------------------
consensus_8520#1      ------------------------------------------------------------
                                                                                  

consensus_8520#0      CTGTTTGCACCAAAAGTCAGCGAAGATACTGCACTAAGCGATCCTGCCATGTGGAACAAT 1040
consensus_8520#2      ------------------------------------------------------------
consensus_8520#1      ------------------------------------------------------------
                                                                                  

consensus_8520#0      CCAGTGGAGGTGCAGGCATTGCACAATTTCGATGCCTCCAACGCTCAGGAGATGTCGATC 1100
consensus_8520#2      ------------------------------------------------------------
consensus_8520#1      ------------------------------------------------------------
                                                                                  

consensus_8520#0      CGTGCGGGACAATCGGTGTTACTTGCGCCGAAGCAAATTCAAACCGACCGACATTTGCTG 1160
consensus_8520#2      ------------------------------------------------------------
consensus_8520#1      ------------------------------------------------------------
                                                                                  

consensus_8520#0      AACAGTGGATGGGTACTAGCGGCTACAGCCGATCGACGAACGTCCGGAATCATTCCACTA 1220
consensus_8520#2      ------------------------------------------------------------
consensus_8520#1      ------------------------------------------------------------
                                                                                  

consensus_8520#0      AACTATGTACAAGCGCTGAAACAATCTGTCGAGAGTCAGTAGATAATTAAAAATATTAGC 1280
consensus_8520#2      ------------------------------------------------------------
consensus_8520#1      ------------------------------------------------------------
                                                                                  

consensus_8520#0      GGGTCTGGTATCTTACAGTGATTTCAATAAAATG 1314
consensus_8520#2      ----------------------------------
consensus_8520#1      ----------------------------------
                                                        




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)