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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8521#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 719 fasta sequence
[CCGGTCAGTCAGGTGATGTTTTTCTCTTCGTCTCAAAACAGAAATCCCATTTTGTAGCAAAAGCGCTTGAACTGTTTTCACATCTTCGCACTTCTTCTCGTACGTAAAATGGCTCTTCTGTCGGCAATGAAAGGAAAGCTGATCTCCGTCATTGGAGATGAGGACACATGCGTCGGATTCCTGCTTGGCGGAGTGGGTGAGATCAACAAGAACCGTCACCCCAACTTCATGGTTGTCGACAAAAATACTGCCGTCAGCGAGATTGAGGATTGCTTCAAGCGCTTCATCAAGCGCGACGATATCGACATCATTCTGATCAATCAGAACTACGCCGAGCTGATCCGTCACGTGATCGATTCGCACACTGCGCCCACCCCGGCGG-TGCTGGAAATCCCATCCAAAGACCACCCGTACGATGCTAGCAAGGATTCGATTCTGCGTCGCGCTAAGGGTATGTTCAATCCGGAAGATATGATTGCTAACCGCGGTTAGATGGCCTGTGCAAAAGGGGATCAAGAGATGGGACGTGCAGTCGGCGGTAACTGCGGCCGGATTGCGTA-TTTTGAACCTCTCCCATTAACAGCCATGTAGTATTAACGCTCCCCCTCCCTCTTCTCGTGTACTATACGATCGTGTGTTGTTTGTGTTTCCCACCCATCGTTATGTTGTTGGCATTCCAAGGATCAAAAGAATAAAGGATCATTNCAGCTGTACAAAAA]
[+] EMBL BM649645 [CCGGTCAGTCAGGTGATGTTTTTCTCTTCGTCTCAAAACAGAAATCCCATTTTGTAGCAAAAGCGCTTGGACTGTTTTCACATCTTCGCACTTCTTCTCGTACGTAAAATGGCTCTTCTGTCGGCAATGAAAGGAAAGCTGATCTCCGTCATTGGAGATGAGGACACATGCGTCGGATTCCTGCTTGGCGGAGTGGGTGAGATCAACAAGAACCGTCACCCCAACTTCATGGTTGTCGACAAAAATACTGCCGTCAGCGAGATTGAGGATTGCTTCAAGCGCTTCATCAAGCGCGACGATATCGACATCATTCTGATCAATCAGAACTACGCCGAGCTGATCCGTCACGTGATCGATTCGCACACTGCGCCCACCCCGGCGG TGCTGGAAATCCCATCCAAAGACCACCCGTACGATGCTAGCAAGGATTCGATTCTGCGTCGCGCTAAGGGTATGTTCAATCCGGAAGATATGATTGCTAACCGCGGTTAGATGGCCTGTGCAAAAGGGGATCAAGAGATGGGACGTGCAGTCGGCGGTAACTGCGGCGGGATTGCGTA TTTTGAACCTCTCCCATTAACAGCCATGTAGTATTAACGCTCCCCCTCCCTCTTCTCGTGTACTATACGATCGTG ]
[+] EMBL BM578317 [ ccgGTTTTTCTCTTCGTCTCAAAACAGAAATCCCATTTTGTAGCAAAAGCGCTTGGACTGTTTTCACATCTTCGCACTTCTTCTCGTACGTAAAATGGCTCTTCTGTCGGCAATGAAAGGAAAGCTGATCTCCGTCATTGGAGATGAGGACACATGCGTCGGATTCCTGCTTGGCGGAGTGGGTGAGATCAACAAGAACCGTCACCCCAACTTCATGGTTGTCGACAAAAATACTGCCGTCAGCGAGATTGAGGATTGCTTCAAGCGCTTCATCAAGCGCGACGATATCGACATCATTCTGATCAATCAGAACTACGCCGAGCTGATCCGTCACGTGATCGATTCGCACACTGCGCCCACCCCGGCGG TGCTGGAAATCCCATCCAAAGACCACCCGTACGATGCTAGCAAGGATTCGATTCTGCGTCGCGCTAAGGGTATGTTCAATCCGGAAGATATGATTGCTAACCGCGGTTAGATGGCCTGTGCAAAAGGGGATCAAGAGATGGGACGTGCAGTCGGCGGTAACTGCGGCGGGA ]
[+] EMBL AGESTS5T7 [ TTTCTCTTCGTCTCAAAACAGAAATCCCATTTTGTAGCAAAAGCGCTTGAACTGTTTTCACATCTTCGCACTTCTTCTCGTACGTAAAATGGCTCTTCTGT ]
[+] EMBL CF542054 [ TCAAAACAGAAATCCCATTTTGTAGCAAAAGCGCTTGAACTGATTTCACATCTTCGCACTTCTTCTCGTACGTAAAATGGCTCTTCTGTCGGCAATGAAAGGAAAGCTGATCTCCGTCATTGGAGATGAGGACACATGCGTCGGATTCCTGCTTGGCGGAGTGGGTGAGATCAACAAGAACCGTCACCCCAACTTCATGGTTGTCGACAAAAATACAGCCGTTAGCGAGATTGAGGATTGCTTCAAGCGCTTCATCAAGCGCGACGATATCGACATCATTCTGATCAATCAGAACTACGCAGAGCTAATCCGTCACGTGATCGATTCGCACACTGCGCCCACCCCGGCGG TGCTGGAAATCCCATCCAAAGACCACCCGTACGATGCTAGCAAGGATTCGATTCTGCGTCGCGCTAAGGGTATGTTCAATCCGGAAGATATGATTGCTAACCGCGGTTAGATGGCCTGTGCAAAAGGGGATCAAGAGATGGGACGTGCAGTCGGCGGTAACTGCGGCCGGATTGCGTATTTTTNAACCTCTCCCAATAACAGCCATGTAGTATTAACGCTCCCCCTCCCTCTNCTCGTGTACTATACGATCGTGTGTNGTNTGTGTNT CCACCCATCGTTATGTNG TGGNATNNCAAGGATCAAAANAATAAAGGATCATTNCAGCTGTACAAAAA]
[+] EMBL AGG10AGVA [ TCAAAACAGAAATCCCATTTTGTAGCAAAAGCGCTTGAACTGTTTTTTCATCTTCGCACTTCTTCTCGTACGTAAAATGGCTCTTCTCTCGGCAATGAAAGGAAAGCTGATCTCCGTCATTGGACATGAGGACACATGCGTCGGATTCCTGCTTGGCGGAGTGGGTGAGATCAACAAGAACCGTCACCCCAACTTCATGGTTGTCGACAAAAATACTGCCGTCAGCGAGATTGAGGATTGCTTCAAGCGCTTCATCAAGCGCGACGATATCGACATCATTGTAATCAATCAGAACTACGCCGAGCTGATCCGTCACGTGATCGATTCGCACACTGCACCCACCCCGGCGGATG TGGAAATCCCATCCAAAGACCACCCGTACGATGCTAGCAAGGATTCGATTCTGCGTCGTGCTAAGGGTATGTTCAATCCGGAAGATATGATTGCTAACCGCGGTTAGATGGCCTGTACAAAAGGGGATCAAGAGATGGGACGTGCAGTCGGCGGTAACTGCGGCCGGATTGCGTA TTTTGAACCTCTCCCATTAACAGCCATGTAGTATTAACGCTCGGGGGGGCCCTTCTCGTGTACAATACGATCGTGTGTTGTTTGTGTTTCCCACCCATCGTTATGTTGTTGGCATTCCAAGGATCAAAAGAATAAAGGATCATT ]
[+] EMBL BM640683 [ ccgAAAACAGAAATCCCATTTTGTAGCAAAAGCGCTTGGACTGTTTTCACATCTTCGCACTTCTTCTCGTACGTAAAATGGCTCTTCTGTCGGCAATGAAAGGAAAGCTGATCTCCGTCATTGGAGATGAGGACACATGCGTCGGATTCCTGCTTGGCGGAGTGGGTGAGATCAACAAGAACCGTCACCCCAACTTCATGGTTGTCGACAAAAATACTGCCGTCAGCGAGATTGAGGATTGCTTCAAGCGCTTCATCAAGCGCGACGATATCGACATCATTCTGATCAATCAGAACTACGCCGAGCTGATCCGTCACGTGATCGATTCGCACACTGCGCCCACCCCGGCGG TGCTGGAAATCCCATCCAAAGACCACCCGTACGATGCTAGCAAGGATTCGATTCTGCGTCGCGCTAAGGGTATGTTCAATCCGGAAGATATGATTGCTAACCGCGGTTAGATGGCCTGTGCAAAAGGGGATCAAGAGATGGGACGTGCAGTCGGCGGTAACTGCGGCGGGATTGCGTA TTTTGAACCTCTCCCATTAACAGCCATGTAGTATTAACGCTCCCCCTCCCTCTTCTCGTGTACTATACGATCGTGTGTTGTTTGTGTTTCCCACCCATCGTTATGTTGTTGGCATTCCAAGGATCAAAAGAATAAAGGATCAT ]
[+] EMBL BM596998 [ ccgCCCATTTTGTAGCAAAAGCGCTTGAACTGTTTTCACATCTTCGCACTTCTTCTCGTACGTAAAATGGCTCTTCTGTCGGCAATGAAAGGAAAGCTGATCTCCGTCATTGGAGATGAGGACACATGCGTCGGATTCCTGCTTGGCGGAGTGGGTGAGATCAACAAGAACCGTCACCCCAACTTCATGGTTGTCGACAAAAATACTGCCGTCAGCGAGATTGAGGATTGCTTCAAGCGCTTCATCAAGCGCGACGATATCGACATCATTCTGATCAATCAGAACTACGCCGAGCTGATCCGTCACGTGATCGATTCGCACACTGCACCCACCCCGGCGG TGCTGGAAATCCCATCCAAAGACCACCCGTACGATGCTAGCAAGGATTCGATTCTGCGTCGCGCTAAGGGTATGTTCAATCCGGAAGATATGATTGCTAACCGCGGTTAGATGGCCTGTACAAAAGGGGATCAAGAGATGGGACGTGCAGTCGGCGGTAACTGCGGCCGGATTGCGTA TTTTGAACCTCTCCCATTAACAGCCATGTAGTATTAACGCTCCCCCTCCCTCTTCTCGTGTACAATACGATCGTGTGTTGTTTGTGTTTCCCACCCATCGTTATGTTGTTGGC ]
[+] EMBL BX617333 [ CATTTTGTAGCAAAAGCGCTTGAACTGTTTTCACATCTTCGCACTTCTTCTCGTACGTAAAATGGCTCTTCTGTCGGCAATGAAAGGAAAGCTGATCTCCGTCATTGGAGATGAGGACACATGCGTCGGATTCCTGCTTGGCGGAGTGGGTGAGATCAACAAGAACCGTCACCCCAACTTCATGGTTGTCGACAAAAATACTGCCGTTAGCGAGATTGAGGATTGCTTCAAGCGCTTCATCAAGCGCGACGATATCGACATTATTCTGATCAATCAGAACTACGCCGAGCTGATCCGTCACGTGATCGATTCGCACACTGCGCCCACCCCGGCGG TACTGGAAATCCCATCCAAAGACCACCCGTACGATGCTAGCAAGGATTCGATTCTGCGTCGCGCTAAGGGTATGTTCAATCCGGAAGATATGATTGCTAACCGCGGTTAGATGGCCTGTACAAAAGGGGATCAAGAGATGGGACGTGCAGTCGGCGGTAACTGCGGCCGGATTGCGTA TTTTGAACCTCTCCCATTAACAGCCATGTAGTATTAACGCTCCCCCTCCCTCTTCTCGTGTACTATACGATCGTGTGTTGTTTGTGTTTCCCACCCATCGTTATGTTGTTGGCATTCCAAGGATCAAAACAA ]
[+] EMBL BM619889 [ ccgCTCGTACGTAAAATGGCTCTTCTGTCGGCAATGAAAGGAAAGCTGATCTCCGTCATTGGAGATGAGGACACATGCGTCGGATTCCTGCTTGGCGGAGTGGGTGAGATCAACAAGAACCGTCACCCCAACTTCATGGTTGTCGACAAAAATACTGCCGTCAGCGAGATTGAGGATTGCTTCAAGCGCTTCATCAAGCGCGACGATATCGACATCATTCTGATCAATCAGAACTACGCCGAGCTGATCCGTCACGTGATCGATTCGCACACTGCGCCCACCCCGGCGG TGCTGGAAATCCCATCCAAAGACCACCCGTACGATGCTAGCAAGGATTCGATTCTGCGTCGCGCTAAGGGTATGTTCAATCCGGAAGATATGATTGCTAACCGCGGTTAGATGGCCTGTGCAAAAGGGGATCAAGAGATGGGACGTGCAGTCGGCGGTAACTGCGGCGGGATTGCGTA TTTTGAACCTCTCCCATTAACAGCCATGTAGTATTAACGCTCCCCCTCCCTCTTCTCGTGTACTATACGATCGTGTGTTGTTTGTGTTTCCCACCCATCGTTATGTTGTTGG ]
[+] EMBL BX615025 [ TGATCTCCGTCATTGGAGATGAGGACACATGCGTCGGATTCCTGCTTGGCGGAGTGGGTGAGATCAACAAGAACCGTCACCCCAACTTCATGGTTGTCGACAAAAATACTGCCGTCAGCGAGATTGAGGATTGCTTCAAGCGCTTCATCAAGCGCGACGATATCGACATCATTCTGATCAATCAGAACTACGCCGAGCTGATCCGTCACGTGATCGATTCGCACACTGCACCCACCCCGGCGG TGCTGGAAATCCCATCCAAAGACCACCCGTACGATGCTAGCAAGGATTCGATTCTGCGTCGCGCTAAGGGTATGTTCAATCCGGAAGATATGATTGCTAACCGCGGTTAGATGGCCTGTACAAAAGGGGATCAAGAGATGGGACGTGCAGTCGGCGGTAACTGCGGCCGGATTGCGTA TTTTGAACCTCTCCCAT ]
consensusID : consensus_8521#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 715 fasta sequence
[AGATCCCCGAGGTTATTGTAGCAAAGCGCTGACTGTTTTACATCTTNNCACTTCTTCTCGTACGTAAAATGGCTCTTCTGTCGGCAATGAAAGGAAAGCTGATCTCCGTCATTGGAGATGAGGACACATGCGTCGGATTCCTGCTTGGCGGAGTGGGTGAGATCAACAAGAACCGTCACCCAACTTCATGGTTGGGTTTCCCGGAACAAAAAAATACTGGGCGTCAGCGAGATTGAAGGGATTGCTTCAAGCGCTTCATCAAGCGCGACGATATCGACATCATTCTGATCAATCAGAACTACGCCGAGCTGATCCGTCACGTGATCGATTCGCACACTGCACCCACCCCGGCGGTGCTGGAAATCCCATCCAAAGACCACCCGTACGATGCTAGCAAGGATTCGATTCTGCGTCGCGCTAAGGGTATGTTCAATCCGGCAAGATATGATTGCTAACCGCGGTTAGATGGCCTGTACAAAAGGGGATCAAGAGATGTGACGTGCAGCTCGGCGGTAACCTGCGGCGCGATTGCGTATTTGAACCTCTCCCATTAAACAGCATGTAGTATTAAAGCCCCCTCCTACTTTTCGTGTAACATAANATCCGGGTGTGGCTNGGGTTCCCCNCCCATCGGCATGTATGTCGGATTCACAAGGATCCAACGAATTACAGCGCTCTTTCCACCTGGGTCACACCCCCACCACACACCCGCTTT]
[+] EMBL AL930462 [AGATCCCCGAGGTTATTGTAGCAAAGCGCTGACTGTTTTACATCTTNNCACTTCTTCTCGTACGTAAAATGGCTCTTCTGTCGGCAATGAAAGGAAAGCTGATCTCCGTCATTGGAGATGAGGACACATGCGTCGGATTCCTGCTTGGCGGAGTGGGTGAGATCAACAAGAACCGTCACCCAACTTCATGGTTGGGTTTCCCGGAACAAAAAAATACTGGGCGTCAGCGAGATTGAAGGGATTGCTTCAAGCGCTTCATCAAGCGCGACGATATCGACATCATTCTGATCAATCAGAACTACGCCGAGCTGATCCGTCACGTGATCGATTCGCACACTGCACCCACCCCGGCGGTGCTGGAAATCCCATCCAAAGACCACCCGTACGATGCTAGCAAGGATTCGATTCTGCGTCGCGCTAAGGGTATGTTCAATCCGGCAAGATATGATTGCTAACCGCGGTTAGATGGCCTGTACAAAAGGGGATCAAGAGATGTGACGTGCAGCTCGGCGGTAACCTGCGGCGCGATTGCGTATTTGAACCTCTCCCATTAAACAGCATGTAGTATTAAAGCCCCCTCCTACTTTTCGTGTAACATAANATCCGGGTGTGGCTNGGGTTCCCCNCCCATCGGCATGTATGTCGGATTCACAAGGATCCAACGAATTACAGCGCTCTTTCCACCTGGGTCACACCCCCACCACACACCCGCTTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8521#0 CCGGTCAGTCAGGTGATGTTTTTCTCTTCGTCTCAAAACAGAAATCCCATTTTGTAGCAA 60
consensus_8521#1 ---------------------------------------AGATCCCCGAGGTTATTGTAG 21
*** ** * ** * * *
consensus_8521#0 AAGCGCTTGAACTGTTTTCACATCTTCGCACTTCTTCTCGTACGTAAAATGGCTCTTCTG 120
consensus_8521#1 CAAAGCGCTGACTGTTTT-ACATCTTNNCACTTCTTCTCGTACGTAAAATGGCTCTTCTG 80
* ** ******** ******* ********************************
consensus_8521#0 TCGGCAATGAAAGGAAAGCTGATCTCCGTCATTGGAGATGAGGACACATGCGTCGGATTC 180
consensus_8521#1 TCGGCAATGAAAGGAAAGCTGATCTCCGTCATTGGAGATGAGGACACATGCGTCGGATTC 140
************************************************************
consensus_8521#0 CTGCTTGGCGGAGTGGGTGAGATCAACAAGAACCGTCACCCCAACTTCATGGTTG----- 235
consensus_8521#1 CTGCTTGGCGGAGTGGGTGAGATCAACAAGAACCGTCACCC-AACTTCATGGTTGGGTTT 199
***************************************** *************
consensus_8521#0 -TCG----ACAAAAATACTGC-CGTCAGCGAGATTGA--GGATTGCTTCAAGCGCTTCAT 287
consensus_8521#1 CCCGGAACAAAAAAATACTGGGCGTCAGCGAGATTGAAGGGATTGCTTCAAGCGCTTCAT 259
** * ********** *************** *********************
consensus_8521#0 CAAGCGCGACGATATCGACATCATTCTGATCAATCAGAACTACGCCGAGCTGATCCGTCA 347
consensus_8521#1 CAAGCGCGACGATATCGACATCATTCTGATCAATCAGAACTACGCCGAGCTGATCCGTCA 319
************************************************************
consensus_8521#0 CGTGATCGATTCGCACACTGCGCCCACCCCGGCGGTGCTGGAAATCCCATCCAAAGACCA 407
consensus_8521#1 CGTGATCGATTCGCACACTGCACCCACCCCGGCGGTGCTGGAAATCCCATCCAAAGACCA 379
********************* **************************************
consensus_8521#0 CCCGTACGATGCTAGCAAGGATTCGATTCTGCGTCGCGCTAAGGGTATGTTCAATCCGG- 466
consensus_8521#1 CCCGTACGATGCTAGCAAGGATTCGATTCTGCGTCGCGCTAAGGGTATGTTCAATCCGGC 439
***********************************************************
consensus_8521#0 AAGATATGATTGCTAACCGCGGTTAGATGGCCTGTGCAAAAGGGGATCAAGAGATGGGAC 526
consensus_8521#1 AAGATATGATTGCTAACCGCGGTTAGATGGCCTGTACAAAAGGGGATCAAGAGATGTGAC 499
*********************************** ******************** ***
consensus_8521#0 GTGCAG-TCGGCGGTAAC-TGCGGCCGGATTGCGTATTTTGAACCTCTCCCATTAACAGC 584
consensus_8521#1 GTGCAGCTCGGCGGTAACCTGCGGCGCGATTGCGTATTT-GAACCTCTCCCATTAAACAG 558
****** *********** ****** ************ ****************
consensus_8521#0 CATGTAGTATTAACGCTCCCCCTCCCTCTTCTCGTGTACTATACGATC-GTGTGTTGTTT 643
consensus_8521#1 CATGTAGTATTAAAGC--CCCCTCCTACTTTTCGTGTAACATAANATCCGGGTGTGGCTN 616
************* ** ******* *** ******* *** *** * **** * *
consensus_8521#0 GTGTTTCCCACCCATCGTTATGT-TGTTGGCATTCCAAGGATCAAAAGAATAAAGGA--T 700
consensus_8521#1 GGGTTCCCCNCCCATCGGCATGTATGTCGGATTCACAAGGATCCAACGAATTACAGCGCT 676
* *** *** ******* **** *** ** * ******** ** **** * * *
consensus_8521#0 CATTNCAGCTGTACAAAAA-------------------- 719
consensus_8521#1 CTTTCCACCTGGGTCACACCCCCACCACACACCCGCTTT 715
* ** ** *** * *
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||