cluster # 853

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Anopheles gambiae
cluster # 853 cluster # 853 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_853#0 length = 603 sequences # 1

consensus_853#1 length = 539 sequences # 1

consensusID : consensus_853#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 603
fasta sequence

                              [CCGGTCCGACCGGTGCTGCGCCGACTGCTGTGTTGGTGTCTCCGTAGCAGCAGGCGAGCACGACACGACAGCAAGAAACCTCCCAAAAGCAGTGCCTGCAGTGGAGTGGTTGTTAAAGCGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGAGTGTTGCCAGGAAAGTGAACGCGCAAATCCCGTCTAGTCTGCAAGGGGCACAATTCACAGCGTAACGATCGGAAGGAAAGAGACGCTCGCACACACACGCACATCCAGAAACACGACGGAAGGTAATCGAATCGAATGCAAATGTCAAACGCGCTGCCGATCGTCGAGTTGCCGCACTGTCGTCACCAGCACCACCATGTCATCGAACCATGACTTCACCTTCGAATGGTCACTGCTCACGAAGAAGGACTGCGGCAAGTGGAACAGCGCCGGTCGCCCCAGTACTGTGCCCAAGAACAACCCCTGAACCGTGCAGCGCACAGCGAACCCCCGTTCGGTGTCGAACAAGGATATACACACACACGCGCGCGCATTACGCTCTCGAACGTTCCCTTGGGCCGGCGGGTCAGGCGGGTTTCCCGGGTTTTCCCCCCCCCCCCCCCGCGACTGCT]

[+] EMBL BM607392             [CCGGTCCGACCGGTGCTGCGCCGACTGCTGTGTTGGTGTCTCCGTAGCAGCAGGCGAGCACGACACGACAGCAAGAAACCTCCCAAAAGCAGTGCCTGCAGTGGAGTGGTTGTTAAAGCGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGAGTGTTGCCAGGAAAGTGAACGCGCAAATCCCGTCTAGTCTGCAAGGGGCACAATTCACAGCGTAACGATCGGAAGGAAAGAGACGCTCGCACACACACGCACATCCAGAAACACGACGGAAGGTAATCGAATCGAATGCAAATGTCAAACGCGCTGCCGATCGTCGAGTTGCCGCACTGTCGTCACCAGCACCACCATGTCATCGAACCATGACTTCACCTTCGAATGGTCACTGCTCACGAAGAAGGACTGCGGCAAGTGGAACAGCGCCGGTCGCCCCAGTACTGTGCCCAAGAACAACCCCTGAACCGTGCAGCGCACAGCGAACCCCCGTTCGGTGTCGAACAAGGATATACACACACACGCGCGCGCATTACGCTCTCGAACGTTCCCTTGGGCCGGCGGGTCAGGCGGGTTTCCCGGGTTTTCCCCCCCCCCCCCCCGCGACTGCT]




>consensus_853#0
CCGGTCCGACCGGTGCTGCGCCGACTGCTGTGTTGGTGTCTCCGTAGCAGCAGGCGAGCA
CGACACGACAGCAAGAAACCTCCCAAAAGCAGTGCCTGCAGTGGAGTGGTTGTTAAAGCG
AGAGAGAGAGAGAGAGAGAGAGAGAGAAAGAGTGTTGCCAGGAAAGTGAACGCGCAAATC
CCGTCTAGTCTGCAAGGGGCACAATTCACAGCGTAACGATCGGAAGGAAAGAGACGCTCG
CACACACACGCACATCCAGAAACACGACGGAAGGTAATCGAATCGAATGCAAATGTCAAA
CGCGCTGCCGATCGTCGAGTTGCCGCACTGTCGTCACCAGCACCACCATGTCATCGAACC
ATGACTTCACCTTCGAATGGTCACTGCTCACGAAGAAGGACTGCGGCAAGTGGAACAGCG
CCGGTCGCCCCAGTACTGTGCCCAAGAACAACCCCTGAACCGTGCAGCGCACAGCGAACC
CCCGTTCGGTGTCGAACAAGGATATACACACACACGCGCGCGCATTACGCTCTCGAACGT
TCCCTTGGGCCGGCGGGTCAGGCGGGTTTCCCGGGTTTTCCCCCCCCCCCCCCCGCGACT
GCT

consensusID : consensus_853#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 539
fasta sequence

                              [ACGTCCCCTAGTCGCCATTGGGCCCCAGCGCGCTCTCGTGTTCCTGTGTGTGTGTGTGTGCGTGTTGAATTGTGTGCAGTGTTTGTGTGCGTAGTGTAAGAGGTCACCTCCAGGAAGGGCCATTAAGTTATTGTGCCAGACACACACACACACACACATACAAGTCCATAAGGGAAAAGTAGCATAAACAGCACGATCCGCATGATAAGAAGGGGCGGCCTGGAGGAGGAAATCGAAGCAGCAAGCCCCCTCTACCCGTGGACGGTGCGCCCTCGGTGGCAGGGCTGAGCACAGTCCGACCGGTGCGGCGCCGACTGCTGTGTTGGTGTCTCCGTAGCAGCAGGCGAGCACGACACGACAGCAAGAAACCTCCCAAAAGCAGTGCCTCAGTGGAGTGGTTTGTTAAAGCGAGAGAGAGAGAGAGAGAGAAAGAGTGTTGCCAGGAAAGTGAACGCGCAAATCCCGTCTAGTCTGCAAGGGGGCACAATTCACAGCTTAACATCGAAGAAAGAGACCTCCACACACACACACACGCACAT]

[+] EMBL AGA281429            [ACGTCCCCTAGTCGCCATTGGGCCCCAGCGCGCTCTCGTGTTCCTGTGTGTGTGTGTGTGCGTGTTGAATTGTGTGCAGTGTTTGTGTGCGTAGTGTAAGAGGTCACCTCCAGGAAGGGCCATTAAGTTATTGTGCCAGACACACACACACACACACATACAAGTCCATAAGGGAAAAGTAGCATAAACAGCACGATCCGCATGATAAGAAGGGGCGGCCTGGAGGAGGAAATCGAAGCAGCAAGCCCCCTCTACCCGTGGACGGTGCGCCCTCGGTGGCAGGGCTGAGCACAGTCCGACCGGTGCGGCGCCGACTGCTGTGTTGGTGTCTCCGTAGCAGCAGGCGAGCACGACACGACAGCAAGAAACCTCCCAAAAGCAGTGCCTCAGTGGAGTGGTTTGTTAAAGCGAGAGAGAGAGAGAGAGAGAAAGAGTGTTGCCAGGAAAGTGAACGCGCAAATCCCGTCTAGTCTGCAAGGGGGCACAATTCACAGCTTAACATCGAAGAAAGAGACCTCCACACACACACACACGCACAT]




>consensus_853#1
ACGTCCCCTAGTCGCCATTGGGCCCCAGCGCGCTCTCGTGTTCCTGTGTGTGTGTGTGTG
CGTGTTGAATTGTGTGCAGTGTTTGTGTGCGTAGTGTAAGAGGTCACCTCCAGGAAGGGC
CATTAAGTTATTGTGCCAGACACACACACACACACACATACAAGTCCATAAGGGAAAAGT
AGCATAAACAGCACGATCCGCATGATAAGAAGGGGCGGCCTGGAGGAGGAAATCGAAGCA
GCAAGCCCCCTCTACCCGTGGACGGTGCGCCCTCGGTGGCAGGGCTGAGCACAGTCCGAC
CGGTGCGGCGCCGACTGCTGTGTTGGTGTCTCCGTAGCAGCAGGCGAGCACGACACGACA
GCAAGAAACCTCCCAAAAGCAGTGCCTCAGTGGAGTGGTTTGTTAAAGCGAGAGAGAGAG
AGAGAGAGAAAGAGTGTTGCCAGGAAAGTGAACGCGCAAATCCCGTCTAGTCTGCAAGGG
GGCACAATTCACAGCTTAACATCGAAGAAAGAGACCTCCACACACACACACACGCACAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_853#0      -------CCGGTC-CGACCGGTGCTGCGCCGACTGCTGTGTTGGTGTCTCCGTAGCAGCA 52
consensus_853#1      ACGTCCCCTAGTCGCCATTGGGCCCCAGCGCGCTCTCGTGTTCCTGTGTGTGTGTGTGTG 60
                            *  *** * *  **  *   **   **   *****  *** *  **    *  

consensus_853#0      GGCG---AGCACGACACGACAGCAAGAAACCTCCCAAAAGCAGT-GCCTGCAGTGGAGTG 108
consensus_853#1      CGTGTTGAATTGTGTGCAGTGTTTGTGTGCGTAGTGTAAGAGGTCACCTCCA--GGAAGG 118
                      * *   *        *            * *     ***  **  *** **  ***  *

consensus_853#0      GTTGTTAAAGCGA-GAGAGAGAGAGAGAGAGAGAGAGAGAAAGAGTGTTGCCAGGAAAGT 167
consensus_853#1      GCCATTAAGTTATTGTGCCAGACACACACACACACACACATACAAGTCCATAAGGGAAAA 178
                     *   ****      * *  *** * * * * * * * * * * *        *** **  

consensus_853#0      G-AACGCGCAAATCCCGTCTAGTCTGCAAGGGGCACAATTCACAGCGTAACGATCGGAAG 226
consensus_853#1      GTAGCATAAACAGCACGATCCGCATGATAAGAAGGGGCGGCCTGGAGGAGGAAATCGAAG 238
                     * * *    * * * **    *  **  * *         *   * * *   *   ****

consensus_853#0      GAAAGAGACGCTCGCACACACA-----CGCACATCCAGAAACACGACGGAAGGTAATCGA 281
consensus_853#1      CAGCAAGCCCCCTCTACCCGTGGACGGTGCGCCCTCGGTGGCAGGGCTGAGCACAGTCCG 298
                      *   ** * *    ** *         ** *   * *   ** * * **    * **  

consensus_853#0      ATCGAATGCAAATGTCAAACGCGCTGCCGATCGTCGAGTTGCCGCA--CTGTCGTCAC-C 338
consensus_853#1      ACCGG-TGCGG-CGCCGACTGCTGTGTTGGTGTCTCCGTAGCAGCAGGCGAGCACGACAC 356
                     * **  ***    * * *  **  **  * *      ** ** ***  *   *   ** *

consensus_853#0      AGCACCACCATGTCATCGAACCATGACTTCACCTTCGAATGGTCACTGCTCACGAAGAAG 398
consensus_853#1      GACAGCAAGAAACCTCCCAAAAGCAGTGCCTCAGTGGAGTGGTT--TGTTAAAGCGAGAG 414
                       ** **  *   *  * **         * *  * ** ****   ** * * *    **

consensus_853#0      GACTGCGGCAAGTGGAACAGCGCCGGTCGCCCCAGTACTGTGCCCAAGAACAACCCCTGA 458
consensus_853#1      AGAGAGAGAGAGAGAAAGAGTGTTG------CCAGGAAAGTGAACGCGCAAATCCCGTCT 468
                            *  ** * ** ** *  *      **** *  ***  *  * * * *** *  

consensus_853#0      ACCGTGCAGCGCACAGCGAACCCCCGTTCGGTGTCGAACAAGGATATACACACACACGCG 518
consensus_853#1      AGTCTGCAAGGGGGCACAATTCACAGCTTAACATCGAAGAAAGAGACCTCCACACACACA 528
                     *   ****  *     * *  * * * *     ***** ** ** *    ******* * 

consensus_853#0      CGCGCATTACGCTCTCGAACGTTCCCTTGGGCCGGCGGGTCAGGCGGGTTTCCCGGGTTT 578
consensus_853#1      CACACGC-ACAT------------------------------------------------ 539
                     * * *   **                                                  

consensus_853#0      TCCCCCCCCCCCCCCCGCGACTGCT 603
consensus_853#1      -------------------------