These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8552#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 1190 fasta sequence [AACAACATTGCTGGTG-AAACAACGAAGGCTTCCGCATCGCATCCCGCATAAATCTTGCTGAAAAAAACGGGGACTTAAATTCCGAAGCAGCTATCATGGAGATGGCAAGGAAAACGTGGGAGATGGAGAACAACATAGTCGTTCTCCCGCCGAGTGACGAGATATTTCGCTACGATGCGGAACAGCAGCAGCGCATCCTGACTGCCCGGCCCTGGGAGAAGGATCCGAACTTTTTTAAGGACATAAAAATTTCCGCCCTGGCACTGATCAAAATGGTGACGCACTCGCGCTCCGGTGGTGCGCTCGAGGTGATGGGACTGCTGCTGGGCAAGGTGGTCGACGACACGATGGTGGTGATGGACGCGTTCGCCCTACCGGTCGAGGGCACCG-AAACGCGGGTCAACGCTCAATCGCAAGCGTACGAGTACATGGCCGCGTACATCGAATCGGCCAAGGAGGTGGGCCGCATGGAGAACGCGATCGGATGGTACCACAGCCATCCCGGGTACGGTTGCTGGCTGTCCGGCATCGACGTCAACACGCAGATGCTCAACCAAAACTACCAGGAACCGTTTGTGGCGATCGTGATCGATCCGGTCAGAACCGTATCGGCCGGTAAGGTGTGTCTCGGTGCATTCCGCACCTATCCCAAAGGATACAAACCACCGAACGAAGAGCCGTCAGAGTATCAGACAA-TTCCGTTGA-GCAAAATCGAAGACTTTGGCGTGCACTGCAAGCAGTACTATCAGCTGGACGTAACGTATTTCAAGTCGGCCCTCGATCGGAAGCTGCTCGACTCGCTGTGGAACAAGTACTGGATGAATACGCTGGGCAGTTCCGGTCTGCTGAGCAACCCGGACTACACCACACGGCAAATTTTGGACCTTTCGGAAAAGCTCGAGCTTAGCGAGGCAAGCCTCGGACGGGGACAGTTCATGGCGAGCGGTTCGCTCGATCCGAACGAGAAGCGCACGGAGGATAAACTATCAAAGGCCAGCCGCGATTGTAGCCGCGCCTCGATCGAACTCATTCACGGGCTGATGGCGCAAATTTCGAAGCACAAACTGTTTAACACGATTAACACCGGCGAGGCGAAGGGTGCGGAAAATACTGCCTGAGCAAACGGCGTATTTTATATCGAAGCGATTCTGAAGGTTTGAATAAATGCTACAACCTTTGCGAACAGGCGC] [+] EMBL CNS09GT1 [AACAACATTGCTGGTG AAACAACGAAGGCTTCCGCATCGCATCCCGGATTAATCTTGCTG AAAAAACGGGGACTTAAATTCCGAAGCAGCTATCATGGAGATGGCAAGGAAAACGTGGGAGATGGAGAACAACATAGTCGTTCTCCCGCCGAGTGACGAGATATTTCGTTACGATGCTGAACAGCAGCAGCGCATCCTGACTGCCCGGCCCTGGGAGAAGGATCCGAACTTTTTTAAGGACATAAAAATTTCCGCCCTGGCACTGATCAAAATGGTGACGCACTCGCGCTCCGGTGGTGCGCTCGAGGTGATGGGACTGCTGCTGGGCAAGGTGGTCGACGACACGATGGTGGTGATGGACGCGTTCGCCCTACCGGTCGAGGGAACCGAAAACGCGGGTCAACGCTCAATCGCAAGCGTACGAGTACATGGCCGCGTACATCGAATCGGCCAAGGAGGTGGGCCGCATGGAGAACGCGATCGGATGGTACCACAGCCATCCCGGGTACGGCTGCTGGCTGTCCGGCATCGACGTCAACACGCAGATGCTCAACCAAAACTACCAGGAACCGTTTGTGGCGATCGTGATCGATCCGGTCAGAACCGTATCGGCCGGTAAGGTGTGTCTCGGTGCATTCCGCACCTATCCCAAAGGATACAAACCACCGAACGAAGAGCCGTCAGAGTATCAGACAA TTCCGTTGAGGCAAAATCGAAGACTTTGGCGTGCACTGCAAGCAGTACTATCAGCTGGACGTAACGTATTTCAAGTCGGCCCTCGATCGGAAGCTGCTCGACTCGCTGTGGAACAAGTACTGGATGAATACGCTGGGCAGTTCCGGTCTGCTGAGCAACCCGGACTACACCACACGGCAAATTTTGGACCTTTCGGAAAAGCTCGAGCTTAGCGAGGCAAGCCTCGGACGGGGACAGTTCATGGCGAGCGGTTCGCTCGATCCGAACGAGAAGCGC ] [+] EMBL BM594620 [ ccGGTGAAAACAACGAAGGCTTCCGCATCGCATCCCGCATAAATCTTGCTGAAAAAAACGGGGACTTAAATTCCGAAGCAGCTATCATGGAGATGGCAAGGAAAACGTGGGAGATGGAGAACAACATAGTCGTTCTCCCGCCGAGTGACGAGATATTTCGCTACGATGCGGAACAGCAGCAGCGCATCCTGACTGCCCGGCCCTGGGAGAAGGATCCGAACTTTTTTAAGGACATAAAAATTTCCGCCCTGGCACTGATCAAAATGGTGACGCACTCGCGCTCCGGTGGTGCGCTCGAGGTGATGGGACTGCTGCTGGGCAAGGTGGTCGACGACACGATGGTGGTGATGGACGCGTTCGCCCTACCGGTCGAGGGCACCG AAACGCGGGTCAACGCTCAATCGCAAGCGTACGAGTACATGGCCGCGTACATCGAATCGGCCAAGGAGGTGGGCCGCATGGAGAACGCGATCGGATGGTACCACAGCCATCCCGGGTACGGTTGCTGGCTGTCCGGCATCGACGTCAACACGCAGATGCTCAACCAAAACTACCAGGA ] [+] EMBL BM649311 [ ccga AAACAACGAAGGCTTCCGCATCGCATCCCGCATAAATCTTGCTGAAAAAAACGGGGACTTAAATTCCGAAGCAGCTATCATGGAGATGGCAAGGAAAACGTGGGAGATGGAGAACAACATAGTCGTTCTCCCGCCGAGTGACGAGATATTTCGCTACGATGCGGAACAGCAGCAGCGCATCCTGACTGCCCGGCCCTGGGAGAAGGATCCGAACTTTTTTAAGGACATAAAAATTTCCGCCCTGGCACTGATCAAAATGGTGACGCACTCGCGCTCCGGTGGTGCGCTCGAGGTGATGGGACTGCTGCTGGGCAAGGTGGTCGACGACACGATGGTGGTGATGGACGCGTTCGCCCTACCGGTCGAGGGCACCG AAACGCGGGTCAACGCTCAATCGCAAGCGTACGAGTACATGGCCGCGTACATCGAATCGGCCAAGGAGGTGGGCCGCATGGAGAACGCGATCGGATGGTACCACAGCCATCCCGGGTACGGTTGCTGGCTGTCCGGCATCGACGTCAACACGCAGATGCTCAACCAAAACTACCAGGAACCGTTTGTGGCGATCGTGATCGATCCGGTCAGAACCGTATCGGCCGGTAAGGTGTGTCTCGGTGCATTCCGCACCTATCCCAAAGGATACAAACCACCGAACGAAGAGCCGTCAGAGTATCAGACAATTTCCGTTGA ] [+] EMBL BM575865 [ ccgAACGAAGGCTTCCGCATCGCATCCCGCATAAATCTTGCTGAAAAAAACGGGGACTTAAATTCCGAAGCAGCTATCATGGAGATGGCAAGGAAAACGTGGGAGATGGAGAACAACATAGTCGTTCTCCCGCCGAGTGACGAGATATTTCGCTACGATGCGGAACAGCAGCAGCGCATCCTGACTGCCCGGCCCTGGGAGAAGGATCCGAACTTTTTTAAGGACATAAAAATTTCCGCCCTGGCACTGATCAAAATGGTGACGCACTCGCGCTCCGGTGGTGCGCTCGAGGTGATGGGACTGCTGCTGGGCAAGGTGGTCGACGACACGATGGTGGTGATGGACGCGTTCGCCCTACCGGTCGAGGGCACCG AAACGCGGGTCAACGCTCAATCGCAAGCGTACGAGTACATGGCCGCGTACATCGAATCGGCCAAGGAGGTGGGCCGCATGGAGAACGCGATCGGATGGTACCACAGCCATCCCGGGTACGGTTGCTGGCTGTCCGGCATCGACGTCAACACGCAGATGCTCAACCAAAACTA ] [+] EMBL BM609103 [ ccgGGCTTCCGCATCGCATCCCGCATAAATCTTGCTGAAAAAAACGGGGACTTAAATTCCGAAGCAGCTATCATGGAGATGGCAAGGAAAACGTGGGAGATGGAGAACAACATAGTCGTTCTCCCGCCGAGTGACGAGATATTTCGCTACGATGCGGAACAGCAGCAGCGCATCCTGACTGCCCGGCCCTGGGAGAAGGATCCGAACTTTTTTAAGGACATAAAAATTTCCGCCCTGGCACTGATCAAAATGGTGACGCACTCGCGCTCCGGTGGTG ] [+] EMBL BX617190 [ TCTTGCTG AAAAAACGGGGACTTAAATTCCGAAGCAGCTATCATGGAGATGGCAAGAAAAACGTGGGAGATGGAGAACAACATAGTCGTTCTCCCGCCGAGTGACGAGATATTTCGCTACGATGCGGAACAGCAGCAGCGCATCCTGACTGCCCGGCCCTGGGAGAAGGATCCGAACTTTTTTAAGGACATAAAAATTTCCGCCCTGGCACTGATCAAAATGGTGACGCACTCGCGCTCCGGTGGTGCGCTCGAGGTGATGGGACTGCTGCTGGGCAAGGTGGTCGACGACACGATGGTGGTGATGGACGCGTTCGCCCTACCGGTCGAGGGCACCG AAACGCGGGTCAACGCTCAATCGCAA ] [+] EMBL BX622472 [ AACGGCGACTTAAATTCCGAAGCAGCTATCATGGAGATGGCAAGAAAAACGTGGGAGATGGAGAACAACATAGTCGTTCTCCCGCCGAGTGACGAGATATTTCGCTACGATGCGGAACAGCAGCAGCGCATCCTGACTGCCCGGCCCTGGGAGAAGGATCCGAACTTTTTTAAGGACATAAAAATTTCCGCCCTGGCACTGATCAAAATGGTGACGCACTCGCGCTCCGGTGGTGCGCTCGAGGTGATGGGACTGCTGCTGGGCAAGGTGGTCGACGACACGATGGTGGTGATGGACGCGTTCGCCCTACCGGTCGAGGGCACCG AAACGCGGGTCAACGCTCAATCGCAAGCGTACGAGTACATGGCCGCGTACATCGAATCGGCCAAGGAGGTGGGCCGCATGGAGAACGCGATCGGATGGTACCACAGCCATCCCGGGTACGGTTGCTGGCTGTCCGGCATCGACGTCAACACGCAGATGCTCAACCAAAACTACCAGGAACCGTTTGTGGCGATCGTGATCGATCCGGTCAGAACCGTATCGGCCGGTAAGGTGTGTCTCGGTGCATTCCGCACCTATCCCAAAGGATACAAACCACCGAACGAAGAGCCGTCAGAGTATCAGACAA TTCCGTTGA GCAAAATCGAAGACTTTGGCGTGCATTGCAAGCAGTACTATCAGCTGG ] [-] EMBL CNS09GT2 [ TTTTAAGTACATAAAAATTTCCGCCCTGGCACTGATCAAAATGGTTACGAACTCGCGCTCCGGTGGTGCGCTCGAGGTGATGGAACTGCTGCTGGGCAAGGTGGTCGACGACACGATGGTGGTGATGGACGCGTTCGCCCTACCGGTCGAGGGCACCG AAACGCGGGTCAACGCTCAATCGCAAGCGTACGAGTACATGGCCGCGTACATCGAATCGGCCAAGGAGGTGGGCCGCATGGAGAACGCGATCGGATGGTACCACAGCCATCCCGGGTACGGCTGCTGGCTGTCCGGCATCGACGTCAACACGCAGATGCTCAACCAAAACTACCAGGAACCGTTTGTGGCGATCGTGATCGATCCGGTCAGAACCGTATCGGCCGGTAAGGTGTGTCTCGGTGCATTCCGCACCTATCCCAAAGGATACAAACCACCGAACGAAGAGCCGTCAGAGTATCAGACAA TTCCGTTGA GCAAAATCGAAGACTTTGGCGTGCACTGCAAGCAGTACTATCAGCTGGACGTAACGTATTTCAAGTCGGCCCTCGATCGGAAGCTGCTCGACTCTTTGTGGAACAAGTACTGGATGAATACGCTGGGCAGTTCCGGTCTGCTGAGCAACCCGGACTACACCACACGGCAAATTTTGGACCTTTCGGAAAAGCTCGAGCTTAGCGAGGCAAGCCTCGGACGGGGACAGTTCATGGCGAGCGGTTCGCTCGATCCGAACGAGAAGCGCACGGAGGATAAACTATCAAAGGCCAGCCGCGATTGTAGCCGCGCCTCGATCGAACTCATTCACGGGCTGATGGCGCAAATTTCGAAGCACAAACTGTTTAACACGATTAACACCGGCGAGGCGAAGGGTGCGGAAAATACTGCCTGAGCAAACGGCGTATTTTATATCGAAGCGATTCTGAAGGTTTGAATAAATGCTACAACCTTTGCGAACAGGCGC] [+] EMBL BM607352 [ ccgAAAAATTTCCGCCCTGGCACTGATCAAAATGGTGACGCACTCGCGCTCCGGTGGTGCGCTCGAGGTGATGGGACTGCTGCTGGGCAAGGTGGTCGACGACACGATGGTGGTGATGGACGCGTTCGCCCTACCGGTCGAGGGCACCG AAACGCGGGTCAACGCTCAATCGCAAGCGTACGAGTACATGGCCGCGTACATCGAATCGGCCAAGGAGGTGGGCCGCATGGAGAACGCGATCGGATGGTACCACAGCCATCCCGGGTACGGCTGCTGGCTGTCCGGCATCGACGTCAACACGCAGATGCTCAACCAAAACTACCAGGAACCGTTTGTGGCGATCGTGATCGATCCGGTCAGAACCGTATCGGCCGGTAAGGTGTGTCTCGGTGCATTCCGCACCTATCCCAAAGGATACAAACCACCGAACGAAGAGCCGTCAGAGTATCAGACAA TTCCGTTGA GCAAAATCGAAGACTTTGGCGTGCACTGCAAGCAGTACTATCAGCTGGACGTAACGTATTTCAAGTCGGCCCTCGATCGGAAGCTGCTCGACTCGCTGTGGAACAAGTACTGGATGAATACGCTGGGCAGTTCCGGTCTGCTGAGCAACCCGGACTACACCACACGG ] [+] EMBL BM596703 [ ccGATCAAAATGGTGACGCACTCGCGCTCCGGTGGTGCGCTCGAGGTGATGGGACTGCTGCTGGGCAAGGTGGTCGACGACACGATGGTGGTGATGGACGCGTTCGCCCTACCGGTCGAGGGCACCG AAACGCGGGTCAACGCTCAATCGCAAGCGTACGAGTACATGGCCGCGTACATCGAATCGGCCAAGGAGGTGGGCCGCATGGAGAACGCGATCGGATGGTACCACAGCCATCCCGGGTACGGTTGCTGGCTGTCCGGCATCGACGTCAACACGCAGATGCTCAACCAAAACTACCAGGAACCGTTTGTGGCGATCGTGATCGATCCGGTCAGAACCGTATCGGCCGGTAAGGTGTGTCTCGGTGCATTCCGCAC ] consensusID : consensus_8552#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 480 fasta sequence [ATCCCCGAGGTATTCGCATCGCATCCCGGATTAATCTTGCTGAAAAAACGGCGACTTAAATTCCGAAGCAGCTATCATGGAGATGGCAAGAAAAACGTGGGAGATGGAGAACAACATAGTCGTTCTCCCGCCGAGTGACGAGATATTTCGCTACGATGCGGAACAGCAGCAGCGCATCCTGACTGCCCGGCCCTGGGAGAAGGATCCGAACTTTTTTAAGGACATAAAAATTTCCGCCCCTGGCACTGATCAAAAATGGTGACGCACTCGCGCTCCGGTGGTGCGCTCGGAGGTGATGGGACTGTCTGCTGGGCAAAGGTTGTGTCTCGCGTGCATTCCGCACCTATTCCCAAAAGGATACAAACCACCGAACGAAGGAGCCCGTCAGAGTATCAGACCAAATTCCGTTGAGGCAAAAATCGAAGACTTTTTGGCGTGCATTGCCAAGCCAGTACTATCAACNCTGGGACGTAAACGTAC] [+] EMBL AL692151 [ATCCCCGAGGTATTCGCATCGCATCCCGGATTAATCTTGCTGAAAAAACGGCGACTTAAATTCCGAAGCAGCTATCATGGAGATGGCAAGAAAAACGTGGGAGATGGAGAACAACATAGTCGTTCTCCCGCCGAGTGACGAGATATTTCGCTACGATGCGGAACAGCAGCAGCGCATCCTGACTGCCCGGCCCTGGGAGAAGGATCCGAACTTTTTTAAGGACATAAAAATTTCCGCCCCTGGCACTGATCAAAAATGGTGACGCACTCGCGCTCCGGTGGTGCGCTCGGAGGTGATGGGACTGTCTGCTGGGCAAAGGTTGTGTCTCGCGTGCATTCCGCACCTATTCCCAAAAGGATACAAACCACCGAACGAAGGAGCCCGTCAGAGTATCAGACCAAATTCCGTTGAGGCAAAAATCGAAGACTTTTTGGCGTGCATTGCCAAGCCAGTACTATCAACNCTGGGACGTAAACGTAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8552#0 AACAACATTGCTGGTGAAACAACGAAGGCTTCCGCATCGCATCCCGCATAAATCTTGCTG 60 consensus_8552#1 ------------------ATCCCCGAGGTATTCGCATCGCATCCCGGATTAATCTTGCTG 42 * * *** * ************** ** ********** consensus_8552#0 AAAAAAACGGGGACTTAAATTCCGAAGCAGCTATCATGGAGATGGCAAGGAAAACGTGGG 120 consensus_8552#1 AAAAAA-CGGCGACTTAAATTCCGAAGCAGCTATCATGGAGATGGCAAGAAAAACGTGGG 101 ****** *** ************************************** ********** consensus_8552#0 AGATGGAGAACAACATAGTCGTTCTCCCGCCGAGTGACGAGATATTTCGCTACGATGCGG 180 consensus_8552#1 AGATGGAGAACAACATAGTCGTTCTCCCGCCGAGTGACGAGATATTTCGCTACGATGCGG 161 ************************************************************ consensus_8552#0 AACAGCAGCAGCGCATCCTGACTGCCCGGCCCTGGGAGAAGGATCCGAACTTTTTTAAGG 240 consensus_8552#1 AACAGCAGCAGCGCATCCTGACTGCCCGGCCCTGGGAGAAGGATCCGAACTTTTTTAAGG 221 ************************************************************ consensus_8552#0 ACATAAAAATTTCCGCCC-TGGCACTGATCAAAA-TGGTGACGCACTCGCGCTCCGGTGG 298 consensus_8552#1 ACATAAAAATTTCCGCCCCTGGCACTGATCAAAAATGGTGACGCACTCGCGCTCCGGTGG 281 ****************** *************** ************************* consensus_8552#0 TGCGCTCG-AGGTGATGGGACTG-CTGCTGGGCAAGGTGGTCGACGACACGATGGTGGTG 356 consensus_8552#1 TGCGCTCGGAGGTGATGGGACTGTCTGCTGGGCAAAG-----------------GTTGTG 324 ******** ************** *********** * ** *** consensus_8552#0 ATGGACGCGTTCGCCCTACCGGTCGAGGGCACCGAAACGCGGGTCAACGCTCAATCGCAA 416 consensus_8552#1 TCTCGCGTGCATTCCGCACCTATTC---CCAAAAGGATACAAACCACCGAACGAAGGAGC 381 ** * ** *** * ** * * ** ** * * * consensus_8552#0 GCGTACGAGTACATGGCCGCGTACATCGAATCGGCCAAGGAGGTGGGCCGCATGGAGAAC 476 consensus_8552#1 CCGTCAGAGTATCAGACCAAATTCCGTTGA--GGCAAAAATCGAAGACTTTTTGGCGTGC 439 *** ***** * ** * * * *** ** * * * *** * * consensus_8552#0 GCGATCGGATGGTACCACAGCCATCCCGGGTACGGTTGCTGGCTGTCCGGCATCGACGTC 536 consensus_8552#1 ATTGCCAA--GCCAGTACTATCAACNCTGGGACGTAAACGTAC----------------- 480 * * * ** ** * * ** *** * * consensus_8552#0 AACACGCAGATGCTCAACCAAAACTACCAGGAACCGTTTGTGGCGATCGTGATCGATCCG 596 consensus_8552#1 ------------------------------------------------------------ consensus_8552#0 GTCAGAACCGTATCGGCCGGTAAGGTGTGTCTCGGTGCATTCCGCACCTATCCCAAAGGA 656 consensus_8552#1 ------------------------------------------------------------ consensus_8552#0 TACAAACCACCGAACGAAGAGCCGTCAGAGTATCAGACAATTCCGTTGAGCAAAATCGAA 716 consensus_8552#1 ------------------------------------------------------------ consensus_8552#0 GACTTTGGCGTGCACTGCAAGCAGTACTATCAGCTGGACGTAACGTATTTCAAGTCGGCC 776 consensus_8552#1 ------------------------------------------------------------ consensus_8552#0 CTCGATCGGAAGCTGCTCGACTCGCTGTGGAACAAGTACTGGATGAATACGCTGGGCAGT 836 consensus_8552#1 ------------------------------------------------------------ consensus_8552#0 TCCGGTCTGCTGAGCAACCCGGACTACACCACACGGCAAATTTTGGACCTTTCGGAAAAG 896 consensus_8552#1 ------------------------------------------------------------ consensus_8552#0 CTCGAGCTTAGCGAGGCAAGCCTCGGACGGGGACAGTTCATGGCGAGCGGTTCGCTCGAT 956 consensus_8552#1 ------------------------------------------------------------ consensus_8552#0 CCGAACGAGAAGCGCACGGAGGATAAACTATCAAAGGCCAGCCGCGATTGTAGCCGCGCC 1016 consensus_8552#1 ------------------------------------------------------------ consensus_8552#0 TCGATCGAACTCATTCACGGGCTGATGGCGCAAATTTCGAAGCACAAACTGTTTAACACG 1076 consensus_8552#1 ------------------------------------------------------------ consensus_8552#0 ATTAACACCGGCGAGGCGAAGGGTGCGGAAAATACTGCCTGAGCAAACGGCGTATTTTAT 1136 consensus_8552#1 ------------------------------------------------------------ consensus_8552#0 ATCGAAGCGATTCTGAAGGTTTGAATAAATGCTACAACCTTTGCGAACAGGCGC 1190 consensus_8552#1 ------------------------------------------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||